mRNA_E-fasciculatus_F_contig14366.3174.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14366.3174.1
Unique NamemRNA_E-fasciculatus_F_contig14366.3174.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 3.850e-38
Identity = 78/160 (48.75%), Postives = 100/160 (62.50%), Query Frame = 1
Query:    1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIG-RPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQ 477
            PP +V + G+ Q+V  +E L++SG  ++  LKVV+VGA  AGKT+L R L  G    T    RT G+D+  +PW       LE++ WDF GH DYH TH++F T  AL+LLV+DLHKFD D   R   V  WLD+LL  VPGSA LVV TH D FG   +
Sbjct:  158 PPWNVIQGGWDQVVSFHEGLSQSGGQVVPSLKVVLVGAVGAGKTTLARGLLDGKIAQTLP-PRTRGIDVHIQPWVPDFDPPLEVLIWDFAGHDDYHSTHQMFLTDGALHLLVVDLHKFDRDVLSRGGGVYIWLDSLLCRVPGSAVLVVATHADAFGDDHE 316          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 8.540e-37
Identity = 79/165 (47.88%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    1 PPHSVAESGFQQIVRHYEALAKSGE-AILNRLKVVMVGASRAGKTSLVRSLRQG----APRPTADWDRTIGVDIG-RPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQ 477
            PP  V + G+ Q++  YE LA+SG  A++  LKVV+VGA  AGKT+L R L  G     P P     RT GVD+   PW       +E+V WDF GH DY+ TH+LF T  +L++LV+DLHKF  D     DTV  WLD+LL  VPGS  LVV TH D FG + +
Sbjct:  152 PPWQVIQGGWYQVISFYEGLAQSGGVAVVPSLKVVLVGAVHAGKTTLTRGLLDGKLAKVPPP-----RTRGVDVHINPWTPNFDPAVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHKFVCDPSSTGDTVYVWLDSLLCRVPGSVVLVVATHADAFGDNRE 311          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: UPI001AAD3AB6 (leucine-rich repeat serine/threonine-protein kinase 2-like n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAD3AB6)

HSP 1 Score: 116 bits (290), Expect = 4.000e-27
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 1
Query:    1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSD-AGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
            PP  V   G +QI  ++  L         R+KV+ +G S AGKT++ RSL +G   P  + DRT+G++I         +    +FWDF GH +Y+ TH +F T  AL +LV+DLH++  D   C +D V  W++ LL  VP S  L V THTDL
Sbjct:  209 PPDEVCAGGLKQIQSYFLQLQGGQAREEKRVKVIFIGTSLAGKTTISRSLSRGKIMPVFEEDRTVGIEISE----FQINDFTFLFWDFAGHLEYYVTHHVFITPHALVILVVDLHRYQMDNIQCFIDLVGFWINNLLMRVPDSVVLTVGTHTDL 358          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A2G9S5K9_LITCT (Roc domain-containing protein (Fragment) n=2 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9S5K9_LITCT)

HSP 1 Score: 111 bits (278), Expect = 1.640e-25
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    4 PHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSD-AGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
            P  V   G +QI  ++  L         R+KV+ +G S AGKT++ RSL +G   P  + DRT+G++I         +    +FWDF GH +Y+ TH +F T  AL +LV+DLH++  D   C +D V  W++ LL  VP S  L V TH DL
Sbjct:  188 PDEVCAGGLKQIQSYFLQLQGGQAREEKRVKVIFIGTSLAGKTTISRSLSRGKIMPVLEEDRTVGIEISE----FQINDFTFLFWDFAGHLEYYVTHHVFITPHALVILVVDLHRYQMDNIQCFIDLVGFWINNLLMRVPDSVVLTVGTHKDL 336          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A6P4Y5Y3_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y5Y3_BRABE)

HSP 1 Score: 110 bits (275), Expect = 4.380e-25
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 1
Query:    1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSS 471
            PP  V   G   I ++++ L +S EA+   LKVV++G + AGKTSLV++L  G    T + DRT  V+I + W    TD +    +DFGGH  YH TH+LF T+ AL LL ++L ++     C    V  WLD L + VPG+   +V +  DL  S+
Sbjct:  423 PPAEVCRQGIDAIRQYFDELERSEEAVSAHLKVVVLGETMAGKTSLVQTLNSGKSTLTEEEDRTHCVEITQ-W--APTDNITFEVYDFGGHDMYHLTHQLFLTQGALNLLTVNLQEYRCSEECYTQAVGFWLDTLNARVPGAVVTIVGSKMDLCSST 576          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: UPI001CF18DCF (malignant fibrous histiocytoma-amplified sequence 1 homolog n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF18DCF)

HSP 1 Score: 107 bits (268), Expect = 3.620e-24
Identity = 58/154 (37.66%), Postives = 88/154 (57.14%), Query Frame = 1
Query:    1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFD-SDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
            PP  V   G +QI  ++  L ++      R+KV+ +GAS AGKT++ RSL QG   P +  +RT+G++I           +  +FWDF GH +Y+ TH +F T +AL +LV++L ++  +D    +D V  W+  L+  VP S  L V THTDL
Sbjct:  194 PPDEVCVGGLKQIRSYFLQLQETQAKEEKRVKVIFIGASMAGKTTVSRSLTQGHTVPVSLKERTVGIEISE----FHIQDVTFLFWDFAGHLEYYVTHHVFITPYALVILVVNLRRYQVADERIFMDLVGFWIKNLVMRVPNSVVLTVGTHTDL 343          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A8J9YSH0_BRALA (MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YSH0_BRALA)

HSP 1 Score: 105 bits (262), Expect = 2.450e-23
Identity = 60/149 (40.27%), Postives = 90/149 (60.40%), Query Frame = 1
Query:   13 VAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
            V+E+G   I +++E L +S E +   LKVV++G ++AGKTSLVR+LR+     T + DRT  V++ + WK  A D +    +DFGGH  YH TH+ F T  ALYLL++++  ++       + V  WLD L + VPG+   +V T  DL
Sbjct:  686 VSENGIVAIRQYFEELERSEEDVSAHLKVVVLGETKAGKTSLVRTLRRWKSTLTEEEDRTHCVEVTQ-WK--ADDSITFEVYDFGGHDVYHLTHQFFLTPDALYLLLVNIENYNCTEKSYSEAVGFWLDTLNARVPGAVVSLVGTKIDL 831          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A6P4XU04_BRABE (Ubiquitinyl hydrolase 1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XU04_BRABE)

HSP 1 Score: 101 bits (252), Expect = 5.430e-22
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
            PP  V   G   + ++++ LA+S E I   +KVV +G + AGKTSLVR+L  G    T + DRT  V+I + W+    D +    +DFGGH  YH TH+ F T  A YLL+++L  +        + V  WLD L + VPG+   +V +  DL
Sbjct:  424 PPTEVCRQGIAAVRQYFDELARSEERISAHMKVVFLGETMAGKTSLVRTLCSGKSTLTEEEDRTHCVEITK-WETN--DNITFEVYDFGGHDVYHLTHQFFLTPDAFYLLLVNLQTYRCSEERYTEAVGFWLDTLNARVPGAVVSIVGSKKDL 573          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: C3ZI89_BRAFL (Roc domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZI89_BRAFL)

HSP 1 Score: 99.4 bits (246), Expect = 3.280e-21
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   13 VAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQV 480
            V   G   I ++Y+ L +S E +  RLKVV++G + AGKTSLV++L++G    T + DRT  V+I + W     D +    +DFGGH  YH TH+ F T+ AL LL +DL  ++       + V  WLD L + VPG+   +V +  D   SSA++
Sbjct:  309 VCSQGITAIRQYYDELERSEEKVSARLKVVVLGDTMAGKTSLVQTLQRGESTLTKEEDRTHCVEITQ-W--APDDNITFEVYDFGGHDVYHLTHQFFLTQGALNLLTVDLQTYNCTEQRYTEAVGFWLDTLNTRVPGAVVTIVGSKMDEC-SSAEI 460          
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: UPI0015FFECD0 (uncharacterized protein LOC118430883 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFECD0)

HSP 1 Score: 99.4 bits (246), Expect = 3.500e-21
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   13 VAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQV 480
            V   G   I ++Y+ L +S E +  RLKVV++G + AGKTSLV++L++G    T + DRT  V+I + W     D +    +DFGGH  YH TH+ F T+ AL LL +DL  ++       + V  WLD L + VPG+   +V +  D   SSA++
Sbjct:  615 VCSQGITAIRQYYDELERSEEKVSARLKVVVLGDTMAGKTSLVQTLQRGESTLTKEEDRTHCVEITQ-W--APDDNITFEVYDFGGHDVYHLTHQFFLTQGALNLLTVDLQTYNCTEQRYTEAVGFWLDTLNTRVPGAVVTIVGSKMDEC-SSAEI 766          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLG1_ECTSI3.850e-3848.75LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI8.540e-3747.88LRR-GTPase of the ROCO family, incomplete sequence... [more]
UPI001AAD3AB64.000e-2739.61leucine-rich repeat serine/threonine-protein kinas... [more]
A0A2G9S5K9_LITCT1.640e-2538.56Roc domain-containing protein (Fragment) n=2 Tax=L... [more]
A0A6P4Y5Y3_BRABE4.380e-2539.49malignant fibrous histiocytoma-amplified sequence ... [more]
UPI001CF18DCF3.620e-2437.66malignant fibrous histiocytoma-amplified sequence ... [more]
A0A8J9YSH0_BRALA2.450e-2340.27MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A6P4XU04_BRABE5.430e-2237.91Ubiquitinyl hydrolase 1 n=1 Tax=Branchiostoma belc... [more]
C3ZI89_BRAFL3.280e-2138.46Roc domain-containing protein (Fragment) n=1 Tax=B... [more]
UPI0015FFECD03.500e-2138.46uncharacterized protein LOC118430883 n=1 Tax=Branc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14366contigE-fasciculatus_F_contig14366:1540..2019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue4e-33
Seed eggNOG ortholog2880.D8LLG1
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927925.4452236-CDS-E-fasciculatus_F_contig14366:1539..20191622927925.4452236-CDS-E-fasciculatus_F_contig14366:1539..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14366 1540..2019 +
1695995753.418053-CDS-E-fasciculatus_F_contig14366:1539..20191695995753.418053-CDS-E-fasciculatus_F_contig14366:1539..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14366 1540..2019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14366.3174.1prot_E-fasciculatus_F_contig14366.3174.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14366 1540..2019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14366.3174.1

>prot_E-fasciculatus_F_contig14366.3174.1 ID=prot_E-fasciculatus_F_contig14366.3174.1|Name=mRNA_E-fasciculatus_F_contig14366.3174.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSL
RQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRL
FYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTH
TDLFGSSAQV
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mRNA from alignment at E-fasciculatus_F_contig14366:1540..2019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14366.3174.1 ID=mRNA_E-fasciculatus_F_contig14366.3174.1|Name=mRNA_E-fasciculatus_F_contig14366.3174.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14366:1540..2019+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCCGCATTCGGTAGCAGAGAGTGGCTTCCAACAAATTGTGAGGCATTA CGAGGCTCTCGCGAAGTCAGGGGAGGCCATCCTGAACAGGCTTAAGGTGG TCATGGTGGGAGCCTCTCGGGCCGGGAAGACCAGCTTGGTGAGAAGCCTT CGGCAGGGAGCGCCCCGGCCGACGGCTGACTGGGACAGGACGATCGGGGT CGACATCGGAAGGCCGTGGAAACTGGGCGCTACGGACCAGCTTGAGCTCG TGTTCTGGGACTTTGGCGGGCACACGGACTACCACCCAACCCACAGGCTT TTCTACACCAAGTGGGCGTTGTACTTGTTGGTCATCGACCTCCACAAGTT CGACAGCGACGCCGGCTGCCGGGTTGATACGGTGGACAGCTGGCTGGACG CACTCTTGTCCGTTGTTCCCGGCTCCGCTTTCCTGGTCGTCCTGACCCAC ACCGACCTATTTGGAAGCAGCGCGCAGGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14366:1540..2019+

>mRNA_E-fasciculatus_F_contig14366.3174.1 ID=mRNA_E-fasciculatus_F_contig14366.3174.1|Name=mRNA_E-fasciculatus_F_contig14366.3174.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14366:1540..2019+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCCGCATTCGGTAGCAGAGAGTGGCTTCCAACAAATTGTGAGGCATTA
CGAGGCTCTCGCGAAGTCAGGGGAGGCCATCCTGAACAGGCTTAAGGTGG
TCATGGTGGGAGCCTCTCGGGCCGGGAAGACCAGCTTGGTGAGAAGCCTT
CGGCAGGGAGCGCCCCGGCCGACGGCTGACTGGGACAGGACGATCGGGGT
CGACATCGGAAGGCCGTGGAAACTGGGCGCTACGGACCAGCTTGAGCTCG
TGTTCTGGGACTTTGGCGGGCACACGGACTACCACCCAACCCACAGGCTT
TTCTACACCAAGTGGGCGTTGTACTTGTTGGTCATCGACCTCCACAAGTT
CGACAGCGACGCCGGCTGCCGGGTTGATACGGTGGACAGCTGGCTGGACG
CACTCTTGTCCGTTGTTCCCGGCTCCGCTTTCCTGGTCGTCCTGACCCAC
ACCGACCTATTTGGAAGCAGCGCGCAGGTTCCTCCGCATTCGGTAGCAGA
GAGTGGCTTCCAACAAATTGTGAGGCATTACGAGGCTCTCGCGAAGTCAG
GGGAGGCCATCCTGAACAGGCTTAAGGTGGTCATGGTGGGAGCCTCTCGG
GCCGGGAAGACCAGCTTGGTGAGAAGCCTTCGGCAGGGAGCGCCCCGGCC
GACGGCTGACTGGGACAGGACGATCGGGGTCGACATCGGAAGGCCGTGGA
AACTGGGCGCTACGGACCAGCTTGAGCTCGTGTTCTGGGACTTTGGCGGG
CACACGGACTACCACCCAACCCACAGGCTTTTCTACACCAAGTGGGCGTT
GTACTTGTTGGTCATCGACCTCCACAAGTTCGACAGCGACGCCGGCTGCC
GGGTTGATACGGTGGACAGCTGGCTGGACGCACTCTTGTCCGTTGTTCCC
GGCTCCGCTTTCCTGGTCGTCCTGACCCACACCGACCTATTTGGAAGCAG
CGCGCAGGTT
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