mRNA_E-fasciculatus_F_contig14366.3174.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 147 bits (372), Expect = 3.850e-38 Identity = 78/160 (48.75%), Postives = 100/160 (62.50%), Query Frame = 1
Query: 1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIG-RPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQ 477
PP +V + G+ Q+V +E L++SG ++ LKVV+VGA AGKT+L R L G T RT G+D+ +PW LE++ WDF GH DYH TH++F T AL+LLV+DLHKFD D R V WLD+LL VPGSA LVV TH D FG +
Sbjct: 158 PPWNVIQGGWDQVVSFHEGLSQSGGQVVPSLKVVLVGAVGAGKTTLARGLLDGKIAQTLP-PRTRGIDVHIQPWVPDFDPPLEVLIWDFAGHDDYHSTHQMFLTDGALHLLVVDLHKFDRDVLSRGGGVYIWLDSLLCRVPGSAVLVVATHADAFGDDHE 316
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 144 bits (362), Expect = 8.540e-37 Identity = 79/165 (47.88%), Postives = 100/165 (60.61%), Query Frame = 1
Query: 1 PPHSVAESGFQQIVRHYEALAKSGE-AILNRLKVVMVGASRAGKTSLVRSLRQG----APRPTADWDRTIGVDIG-RPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQ 477
PP V + G+ Q++ YE LA+SG A++ LKVV+VGA AGKT+L R L G P P RT GVD+ PW +E+V WDF GH DY+ TH+LF T +L++LV+DLHKF D DTV WLD+LL VPGS LVV TH D FG + +
Sbjct: 152 PPWQVIQGGWYQVISFYEGLAQSGGVAVVPSLKVVLVGAVHAGKTTLTRGLLDGKLAKVPPP-----RTRGVDVHINPWTPNFDPAVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHKFVCDPSSTGDTVYVWLDSLLCRVPGSVVLVVATHADAFGDNRE 311
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: UPI001AAD3AB6 (leucine-rich repeat serine/threonine-protein kinase 2-like n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAD3AB6) HSP 1 Score: 116 bits (290), Expect = 4.000e-27 Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSD-AGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
PP V G +QI ++ L R+KV+ +G S AGKT++ RSL +G P + DRT+G++I + +FWDF GH +Y+ TH +F T AL +LV+DLH++ D C +D V W++ LL VP S L V THTDL
Sbjct: 209 PPDEVCAGGLKQIQSYFLQLQGGQAREEKRVKVIFIGTSLAGKTTISRSLSRGKIMPVFEEDRTVGIEISE----FQINDFTFLFWDFAGHLEYYVTHHVFITPHALVILVVDLHRYQMDNIQCFIDLVGFWINNLLMRVPDSVVLTVGTHTDL 358
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A2G9S5K9_LITCT (Roc domain-containing protein (Fragment) n=2 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9S5K9_LITCT) HSP 1 Score: 111 bits (278), Expect = 1.640e-25 Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 4 PHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSD-AGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
P V G +QI ++ L R+KV+ +G S AGKT++ RSL +G P + DRT+G++I + +FWDF GH +Y+ TH +F T AL +LV+DLH++ D C +D V W++ LL VP S L V TH DL
Sbjct: 188 PDEVCAGGLKQIQSYFLQLQGGQAREEKRVKVIFIGTSLAGKTTISRSLSRGKIMPVLEEDRTVGIEISE----FQINDFTFLFWDFAGHLEYYVTHHVFITPHALVILVVDLHRYQMDNIQCFIDLVGFWINNLLMRVPDSVVLTVGTHKDL 336
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A6P4Y5Y3_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y5Y3_BRABE) HSP 1 Score: 110 bits (275), Expect = 4.380e-25 Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 1
Query: 1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSS 471
PP V G I ++++ L +S EA+ LKVV++G + AGKTSLV++L G T + DRT V+I + W TD + +DFGGH YH TH+LF T+ AL LL ++L ++ C V WLD L + VPG+ +V + DL S+
Sbjct: 423 PPAEVCRQGIDAIRQYFDELERSEEAVSAHLKVVVLGETMAGKTSLVQTLNSGKSTLTEEEDRTHCVEITQ-W--APTDNITFEVYDFGGHDMYHLTHQLFLTQGALNLLTVNLQEYRCSEECYTQAVGFWLDTLNARVPGAVVTIVGSKMDLCSST 576
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: UPI001CF18DCF (malignant fibrous histiocytoma-amplified sequence 1 homolog n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF18DCF) HSP 1 Score: 107 bits (268), Expect = 3.620e-24 Identity = 58/154 (37.66%), Postives = 88/154 (57.14%), Query Frame = 1
Query: 1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFD-SDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
PP V G +QI ++ L ++ R+KV+ +GAS AGKT++ RSL QG P + +RT+G++I + +FWDF GH +Y+ TH +F T +AL +LV++L ++ +D +D V W+ L+ VP S L V THTDL
Sbjct: 194 PPDEVCVGGLKQIRSYFLQLQETQAKEEKRVKVIFIGASMAGKTTVSRSLTQGHTVPVSLKERTVGIEISE----FHIQDVTFLFWDFAGHLEYYVTHHVFITPYALVILVVNLRRYQVADERIFMDLVGFWIKNLVMRVPNSVVLTVGTHTDL 343
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A8J9YSH0_BRALA (MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YSH0_BRALA) HSP 1 Score: 105 bits (262), Expect = 2.450e-23 Identity = 60/149 (40.27%), Postives = 90/149 (60.40%), Query Frame = 1
Query: 13 VAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
V+E+G I +++E L +S E + LKVV++G ++AGKTSLVR+LR+ T + DRT V++ + WK A D + +DFGGH YH TH+ F T ALYLL++++ ++ + V WLD L + VPG+ +V T DL
Sbjct: 686 VSENGIVAIRQYFEELERSEEDVSAHLKVVVLGETKAGKTSLVRTLRRWKSTLTEEEDRTHCVEVTQ-WK--ADDSITFEVYDFGGHDVYHLTHQFFLTPDALYLLLVNIENYNCTEKSYSEAVGFWLDTLNARVPGAVVSLVGTKIDL 831
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: A0A6P4XU04_BRABE (Ubiquitinyl hydrolase 1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XU04_BRABE) HSP 1 Score: 101 bits (252), Expect = 5.430e-22 Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 1 PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDL 459
PP V G + ++++ LA+S E I +KVV +G + AGKTSLVR+L G T + DRT V+I + W+ D + +DFGGH YH TH+ F T A YLL+++L + + V WLD L + VPG+ +V + DL
Sbjct: 424 PPTEVCRQGIAAVRQYFDELARSEERISAHMKVVFLGETMAGKTSLVRTLCSGKSTLTEEEDRTHCVEITK-WETN--DNITFEVYDFGGHDVYHLTHQFFLTPDAFYLLLVNLQTYRCSEERYTEAVGFWLDTLNARVPGAVVSIVGSKKDL 573
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: C3ZI89_BRAFL (Roc domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZI89_BRAFL) HSP 1 Score: 99.4 bits (246), Expect = 3.280e-21 Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 1
Query: 13 VAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQV 480
V G I ++Y+ L +S E + RLKVV++G + AGKTSLV++L++G T + DRT V+I + W D + +DFGGH YH TH+ F T+ AL LL +DL ++ + V WLD L + VPG+ +V + D SSA++
Sbjct: 309 VCSQGITAIRQYYDELERSEEKVSARLKVVVLGDTMAGKTSLVQTLQRGESTLTKEEDRTHCVEITQ-W--APDDNITFEVYDFGGHDVYHLTHQFFLTQGALNLLTVDLQTYNCTEQRYTEAVGFWLDTLNTRVPGAVVTIVGSKMDEC-SSAEI 460
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Match: UPI0015FFECD0 (uncharacterized protein LOC118430883 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFECD0) HSP 1 Score: 99.4 bits (246), Expect = 3.500e-21 Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 1
Query: 13 VAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLRQGAPRPTADWDRTIGVDIGRPWKLGATDQLELVFWDFGGHTDYHPTHRLFYTKWALYLLVIDLHKFDSDAGCRVDTVDSWLDALLSVVPGSAFLVVLTHTDLFGSSAQV 480
V G I ++Y+ L +S E + RLKVV++G + AGKTSLV++L++G T + DRT V+I + W D + +DFGGH YH TH+ F T+ AL LL +DL ++ + V WLD L + VPG+ +V + D SSA++
Sbjct: 615 VCSQGITAIRQYYDELERSEEKVSARLKVVVLGDTMAGKTSLVQTLQRGESTLTKEEDRTHCVEITQ-W--APDDNITFEVYDFGGHDVYHLTHQFFLTQGALNLLTVDLQTYNCTEQRYTEAVGFWLDTLNTRVPGAVVTIVGSKMDEC-SSAEI 766 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14366.3174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14366.3174.1 >prot_E-fasciculatus_F_contig14366.3174.1 ID=prot_E-fasciculatus_F_contig14366.3174.1|Name=mRNA_E-fasciculatus_F_contig14366.3174.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp PPHSVAESGFQQIVRHYEALAKSGEAILNRLKVVMVGASRAGKTSLVRSLback to top mRNA from alignment at E-fasciculatus_F_contig14366:1540..2019+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14366.3174.1 ID=mRNA_E-fasciculatus_F_contig14366.3174.1|Name=mRNA_E-fasciculatus_F_contig14366.3174.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14366:1540..2019+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14366:1540..2019+ >mRNA_E-fasciculatus_F_contig14366.3174.1 ID=mRNA_E-fasciculatus_F_contig14366.3174.1|Name=mRNA_E-fasciculatus_F_contig14366.3174.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14366:1540..2019+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |