mRNA_E-fasciculatus_F_contig14359.3171.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI) HSP 1 Score: 456 bits (1172), Expect = 1.980e-151 Identity = 266/293 (90.78%), Postives = 270/293 (92.15%), Query Frame = 1
Query: 1 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP---TAAAGNDIGDSAGNXXXXXXXXXXXXXXXXX---RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEE-AKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP T AAG+ G SAGN XXXXXXXXXXXX RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLE SPLGE +EK+E+ AK VKEVD MAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIR RLLGQPSVAEFKARWNLPIYFQLR
Sbjct: 273 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHPWPSTPAAGD--GASAGNKAGXXXXXXXXXXXXGDGGARESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLEGSPLGEKDEKEEDGAKTGTVKEVDAMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRHRLLGQPSVAEFKARWNLPIYFQLR 563
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE) HSP 1 Score: 434 bits (1115), Expect = 7.740e-147 Identity = 263/293 (89.76%), Postives = 270/293 (92.15%), Query Frame = 1
Query: 1 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP---TAAAGNDIGDSAGNXXXXXXXXXXXXXXXXX--RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEE-AKAKAVKEVDVMAPLPVDLVCNGVWRPVQQ-VLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP T AAG+ G SAGNXXXXXXXXXXXXXXXXX RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLE S LGE +E +++ AK +KEVD MAPLPVDLVCNGVWRPVQQ VLMTRLSSIFATGMV AQHSNF+LCMEFLEGLAAIAG EKR RIR RLLGQPSVAEFKARWNLPIYFQLR
Sbjct: 280 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHPWPSTPAAGD--GASAGNXXXXXXXXXXXXXXXXXGARESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLEGSLLGEKKENEDDGAKTWTLKEVDAMAPLPVDLVCNGVWRPVQQEVLMTRLSSIFATGMVTAQHSNFMLCMEFLEGLAAIAGSEKRLRIRHRLLGQPSVAEFKARWNLPIYFQLR 570
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A835ZA59_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA59_9STRA) HSP 1 Score: 132 bits (332), Expect = 4.880e-31 Identity = 79/202 (39.11%), Postives = 103/202 (50.99%), Query Frame = 1
Query: 259 QALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIA--GGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
+A L+CLR F+ALG G +AEKQ+A +QPFL+ T G +D RGS +GL L +E++ YV AV AA FA+ PVDL+ N VW P+Q L+ RL SIFATG+ H N+ L LA GG + +QRL P+ A+F+ARWNLP+YFQLR
Sbjct: 340 EAFLACLRAFAALGCGRDAEKQYASVAVQPFLDGVLTQGRLDAGARGSCQGLAALYDEIIHYVATACAPAVRAAAATFAAADAA-------------------------------PVDLLGNAVWAPLQASLVARLPSIFATGLADVFHRNYALSQALPRRLAEACSGGGREGGSAQQRLEAHPASADFRARWNLPVYFQLR 510
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: M4BZJ7_HYAAE (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZJ7_HYAAE) HSP 1 Score: 79.0 bits (193), Expect = 8.620e-13 Identity = 57/195 (29.23%), Postives = 85/195 (43.59%), Query Frame = 1
Query: 277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGE-KRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
LR + L E+ R +++PF E T G +DG RGS +GL + +L ++ + A + S +++CS VD++ N +W+P+Q+VL T+ S IF H N+ M FL A I G K ++ R SV EFK +WNL +YFQLR
Sbjct: 263 LRAYVLLDKSHIPEEMIGRLLVKPFAEENLTRGKLDGRVRGSCEGLPQIFESILDFITS------KFAGTLALSVCQGEIKCS---------------------------VDILGNAIWKPLQEVLSTKFSVIFQAADPDRFHKNYTTSMHFL---AEIEGRFCKSEALKSRFRSHESVVEFKEKWNLDVYFQLR 421
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A8K1FH08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH08_PYTOL) HSP 1 Score: 78.2 bits (191), Expect = 1.600e-12 Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1
Query: 277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
LR + L E+ AR ++ PF + T G +DG RGS +GL + E+L +V + F L + C GET+ VD++ N VW+P+ ++L T+ + IF T H+N+ + M FL + G E ++ R SV EFK +WN+ +YFQLR
Sbjct: 264 LRSYVLLQKTHVPEEMIARLLVHPFADENITRGKIDGRVRGSCEGLQSVYEEILEFVS-----------NKFKHILSLSV-CQ--GETKSA-------------------VDILGNAVWKPLFEILSTKHAVIFKTADADRFHTNYTISMGFLTAMEQFCGSEA---MKLRFRTHESVIEFKEKWNMDVYFQLR 421
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A3R7H9J4_9STRA (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H9J4_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.260e-11 Identity = 54/194 (27.84%), Postives = 82/194 (42.27%), Query Frame = 1
Query: 277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
LR + L E+ R ++QPF E T G +DG RGS +GL + +L ++ D + A S +CS VD++ N +W+P+Q++L T+ IF H ++ + M FL + K +IR R SV EFK +WN+ +YFQLR
Sbjct: 269 LRAYVLLHKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYESILDFISNNFSDTLALAICQGES------KCS---------------------------VDILGNAIWKPLQEILSTKHGIIFQAADPERFHQSYTISMRFLADIEERFCKTKIMKIRFR--AHESVVEFKEKWNIDVYFQLR 427
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A3F2S2H8_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2H8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.580e-11 Identity = 54/194 (27.84%), Postives = 82/194 (42.27%), Query Frame = 1
Query: 277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
LR + L E+ R ++QPF E T G +DG RGS +GL + +L ++ D + A S +CS VD++ N +W+P+Q++L T+ IF H ++ + M FL + K +IR R SV EFK +WN+ +YFQLR
Sbjct: 269 LRAYVLLHKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYESILDFISNNFSDTLALAICQGES------KCS---------------------------VDILGNAIWKPLQEILSTKHGIIFQAADPERFHQSYTISMRFLADIEERFCKTKIMKIRFR--AHESVVEFKEKWNIDVYFQLR 427
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A662XDZ1_9STRA (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDZ1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 8.790e-11 Identity = 53/194 (27.32%), Postives = 83/194 (42.78%), Query Frame = 1
Query: 277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
LR + L E+ R ++QPF E T G +DG RGS +GL + + +L ++ D + S + +CS VD++ N +W+P+Q++L T+ IF H ++ L M FL + + +IR R SV EFK +WN+ +YFQLR
Sbjct: 267 LRAYVLLQKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYDAILDFISSKFSDT------LALSVCQGESKCS---------------------------VDILGNAIWKPLQEILATKHGLIFQAADPDRFHQSYTLSMRFLADVEERFCSSEIMKIRFRC--HESVVEFKEKWNIDVYFQLR 425
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A662XYQ2_9STRA (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYQ2_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.530e-10 Identity = 55/194 (28.35%), Postives = 85/194 (43.81%), Query Frame = 1
Query: 277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
LR + L E+ R ++QPF E T G +DG RGS +GL + + +L ++ D F+ L + C Q E+K VD++ N +W+P+Q++L T+ IF H ++ L M L + + +IR R SV EFK +WN+ +YFQLR
Sbjct: 249 LRAYVLLQKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYDAILDFIA-----------DKFSDTLALSV-C---------QGESKCS------------VDILGNAIWKPLQEILATKHGLIFQAADPDRFHQSYTLSMRLLANVEERFCSSEIMKIRFRC--HESVVEFKEKWNIDVYFQLR 407
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A6A4EJE8_9STRA (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EJE8_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.860e-10 Identity = 53/194 (27.32%), Postives = 84/194 (43.30%), Query Frame = 1
Query: 277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
LR + L E+ R ++QPF E T G +DG RGS +GL + +L ++ + FA L + C Q E+K VD++ N +W+P+Q++L ++ IF H ++ + M FL + K ++ R SV EFK +WN+ +YFQLR
Sbjct: 260 LRAYVLLNKSHIPEEMIGRLLVQPFAEENLTRGKLDGRVRGSCEGLPQIYESILEFIT-----------NKFAGTLALSV-C---------QGESKCS------------VDILGNAIWKPLQEILSSKHGVIFQAADPERFHQSYTISMRFLADVEERFC--KSEIMKSRFRSHESVVEFKEKWNIDVYFQLR 418 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14359.3171.1 >prot_E-fasciculatus_F_contig14359.3171.1 ID=prot_E-fasciculatus_F_contig14359.3171.1|Name=mRNA_E-fasciculatus_F_contig14359.3171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=286bp AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHPback to top mRNA from alignment at E-fasciculatus_F_contig14359:109..2755+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14359.3171.1 ID=mRNA_E-fasciculatus_F_contig14359.3171.1|Name=mRNA_E-fasciculatus_F_contig14359.3171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2647bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14359:109..2755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14359:109..2755+ >mRNA_E-fasciculatus_F_contig14359.3171.1 ID=mRNA_E-fasciculatus_F_contig14359.3171.1|Name=mRNA_E-fasciculatus_F_contig14359.3171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1716bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14359:109..2755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |