mRNA_E-fasciculatus_F_contig14359.3171.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14359.3171.1
Unique NamemRNA_E-fasciculatus_F_contig14359.3171.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 456 bits (1172), Expect = 1.980e-151
Identity = 266/293 (90.78%), Postives = 270/293 (92.15%), Query Frame = 1
Query:    1 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP---TAAAGNDIGDSAGNXXXXXXXXXXXXXXXXX---RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEE-AKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP   T AAG+  G SAGN   XXXXXXXXXXXX     RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLE SPLGE +EK+E+ AK   VKEVD MAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIR RLLGQPSVAEFKARWNLPIYFQLR
Sbjct:  273 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHPWPSTPAAGD--GASAGNKAGXXXXXXXXXXXXGDGGARESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLEGSPLGEKDEKEEDGAKTGTVKEVDAMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRHRLLGQPSVAEFKARWNLPIYFQLR 563          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 434 bits (1115), Expect = 7.740e-147
Identity = 263/293 (89.76%), Postives = 270/293 (92.15%), Query Frame = 1
Query:    1 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP---TAAAGNDIGDSAGNXXXXXXXXXXXXXXXXX--RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEE-AKAKAVKEVDVMAPLPVDLVCNGVWRPVQQ-VLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP   T AAG+  G SAGNXXXXXXXXXXXXXXXXX  RESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLE S LGE +E +++ AK   +KEVD MAPLPVDLVCNGVWRPVQQ VLMTRLSSIFATGMV AQHSNF+LCMEFLEGLAAIAG EKR RIR RLLGQPSVAEFKARWNLPIYFQLR
Sbjct:  280 AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHPWPSTPAAGD--GASAGNXXXXXXXXXXXXXXXXXGARESRRQALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLEGSLLGEKKENEDDGAKTWTLKEVDAMAPLPVDLVCNGVWRPVQQEVLMTRLSSIFATGMVTAQHSNFMLCMEFLEGLAAIAGSEKRLRIRHRLLGQPSVAEFKARWNLPIYFQLR 570          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A835ZA59_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA59_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.880e-31
Identity = 79/202 (39.11%), Postives = 103/202 (50.99%), Query Frame = 1
Query:  259 QALLSCLRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIA--GGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            +A L+CLR F+ALG G +AEKQ+A   +QPFL+   T G +D   RGS +GL  L +E++ YV      AV AA   FA+                                   PVDL+ N VW P+Q  L+ RL SIFATG+    H N+ L       LA     GG +    +QRL   P+ A+F+ARWNLP+YFQLR
Sbjct:  340 EAFLACLRAFAALGCGRDAEKQYASVAVQPFLDGVLTQGRLDAGARGSCQGLAALYDEIIHYVATACAPAVRAAAATFAAADAA-------------------------------PVDLLGNAVWAPLQASLVARLPSIFATGLADVFHRNYALSQALPRRLAEACSGGGREGGSAQQRLEAHPASADFRARWNLPVYFQLR 510          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: M4BZJ7_HYAAE (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZJ7_HYAAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.620e-13
Identity = 57/195 (29.23%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGE-KRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            LR +  L      E+   R +++PF E   T G +DG  RGS +GL  +   +L ++        + A  +  S    +++CS                           VD++ N +W+P+Q+VL T+ S IF        H N+   M FL   A I G   K   ++ R     SV EFK +WNL +YFQLR
Sbjct:  263 LRAYVLLDKSHIPEEMIGRLLVKPFAEENLTRGKLDGRVRGSCEGLPQIFESILDFITS------KFAGTLALSVCQGEIKCS---------------------------VDILGNAIWKPLQEVLSTKFSVIFQAADPDRFHKNYTTSMHFL---AEIEGRFCKSEALKSRFRSHESVVEFKEKWNLDVYFQLR 421          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A8K1FH08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH08_PYTOL)

HSP 1 Score: 78.2 bits (191), Expect = 1.600e-12
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            LR +  L      E+  AR ++ PF +   T G +DG  RGS +GL  +  E+L +V            + F     L + C   GET+                     VD++ N VW+P+ ++L T+ + IF T      H+N+ + M FL  +    G E    ++ R     SV EFK +WN+ +YFQLR
Sbjct:  264 LRSYVLLQKTHVPEEMIARLLVHPFADENITRGKIDGRVRGSCEGLQSVYEEILEFVS-----------NKFKHILSLSV-CQ--GETKSA-------------------VDILGNAVWKPLFEILSTKHAVIFKTADADRFHTNYTISMGFLTAMEQFCGSEA---MKLRFRTHESVIEFKEKWNMDVYFQLR 421          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A3R7H9J4_9STRA (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H9J4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.260e-11
Identity = 54/194 (27.84%), Postives = 82/194 (42.27%), Query Frame = 1
Query:  277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            LR +  L      E+   R ++QPF E   T G +DG  RGS +GL  +   +L ++     D +  A     S      +CS                           VD++ N +W+P+Q++L T+   IF        H ++ + M FL  +       K  +IR R     SV EFK +WN+ +YFQLR
Sbjct:  269 LRAYVLLHKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYESILDFISNNFSDTLALAICQGES------KCS---------------------------VDILGNAIWKPLQEILSTKHGIIFQAADPERFHQSYTISMRFLADIEERFCKTKIMKIRFR--AHESVVEFKEKWNIDVYFQLR 427          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A3F2S2H8_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2H8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.580e-11
Identity = 54/194 (27.84%), Postives = 82/194 (42.27%), Query Frame = 1
Query:  277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            LR +  L      E+   R ++QPF E   T G +DG  RGS +GL  +   +L ++     D +  A     S      +CS                           VD++ N +W+P+Q++L T+   IF        H ++ + M FL  +       K  +IR R     SV EFK +WN+ +YFQLR
Sbjct:  269 LRAYVLLHKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYESILDFISNNFSDTLALAICQGES------KCS---------------------------VDILGNAIWKPLQEILSTKHGIIFQAADPERFHQSYTISMRFLADIEERFCKTKIMKIRFR--AHESVVEFKEKWNIDVYFQLR 427          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A662XDZ1_9STRA (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDZ1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.790e-11
Identity = 53/194 (27.32%), Postives = 83/194 (42.78%), Query Frame = 1
Query:  277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            LR +  L      E+   R ++QPF E   T G +DG  RGS +GL  + + +L ++     D       +  S    + +CS                           VD++ N +W+P+Q++L T+   IF        H ++ L M FL  +       +  +IR R     SV EFK +WN+ +YFQLR
Sbjct:  267 LRAYVLLQKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYDAILDFISSKFSDT------LALSVCQGESKCS---------------------------VDILGNAIWKPLQEILATKHGLIFQAADPDRFHQSYTLSMRFLADVEERFCSSEIMKIRFRC--HESVVEFKEKWNIDVYFQLR 425          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A662XYQ2_9STRA (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYQ2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.530e-10
Identity = 55/194 (28.35%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            LR +  L      E+   R ++QPF E   T G +DG  RGS +GL  + + +L ++            D F+    L + C         Q E+K              VD++ N +W+P+Q++L T+   IF        H ++ L M  L  +       +  +IR R     SV EFK +WN+ +YFQLR
Sbjct:  249 LRAYVLLQKSHIPEEMIGRLLVQPFAEENLTRGKLDGRMRGSCEGLPQIYDAILDFIA-----------DKFSDTLALSV-C---------QGESKCS------------VDILGNAIWKPLQEILATKHGLIFQAADPDRFHQSYTLSMRLLANVEERFCSSEIMKIRFRC--HESVVEFKEKWNIDVYFQLR 407          
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Match: A0A6A4EJE8_9STRA (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EJE8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.860e-10
Identity = 53/194 (27.32%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  277 LRPFSALGSGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVKEVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAPLPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR 858
            LR +  L      E+   R ++QPF E   T G +DG  RGS +GL  +   +L ++            + FA    L + C         Q E+K              VD++ N +W+P+Q++L ++   IF        H ++ + M FL  +       K   ++ R     SV EFK +WN+ +YFQLR
Sbjct:  260 LRAYVLLNKSHIPEEMIGRLLVQPFAEENLTRGKLDGRVRGSCEGLPQIYESILEFIT-----------NKFAGTLALSV-C---------QGESKCS------------VDILGNAIWKPLQEILSSKHGVIFQAADPERFHQSYTISMRFLADVEERFC--KSEIMKSRFRSHESVVEFKEKWNIDVYFQLR 418          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14359.3171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LMA5_ECTSI1.980e-15190.78Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6H5JYJ6_9PHAE7.740e-14789.76Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
A0A835ZA59_9STRA4.880e-3139.11Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
M4BZJ7_HYAAE8.620e-1329.23Conserved oligomeric Golgi complex subunit 2 n=2 T... [more]
A0A8K1FH08_PYTOL1.600e-1229.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7H9J4_9STRA4.260e-1127.84Conserved oligomeric Golgi complex subunit 2 n=2 T... [more]
A0A3F2S2H8_9STRA4.580e-1127.84Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A662XDZ1_9STRA8.790e-1127.32Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
A0A662XYQ2_9STRA1.530e-1028.35Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
A0A6A4EJE8_9STRA1.860e-1027.32Conserved oligomeric Golgi complex subunit 2 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14359contigE-fasciculatus_F_contig14359:109..2755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score457.2
Seed ortholog evalue5.6e-126
Seed eggNOG ortholog2880.D8LMA5
Preferred nameCOG2
KEGG koko:K20289
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
EggNOG free text desc.Golgi organization
EggNOG OGsKOG2307@1,KOG2307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionweakly similar to brefeldin A-sensitive Golgi protein-like
Ec32 orthologEc-05_002100.1
Exons4
Model size858
Cds size858
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14359.3171.1prot_E-fasciculatus_F_contig14359.3171.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14359 109..2755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.9978025-CDS-E-fasciculatus_F_contig14359:108..4401622927924.9978025-CDS-E-fasciculatus_F_contig14359:108..440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 109..440 +
1695995753.2307444-CDS-E-fasciculatus_F_contig14359:108..4401695995753.2307444-CDS-E-fasciculatus_F_contig14359:108..440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 109..440 +
1622927925.014002-CDS-E-fasciculatus_F_contig14359:1046..11671622927925.014002-CDS-E-fasciculatus_F_contig14359:1046..1167Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 1047..1167 +
1695995753.2434628-CDS-E-fasciculatus_F_contig14359:1046..11671695995753.2434628-CDS-E-fasciculatus_F_contig14359:1046..1167Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 1047..1167 +
1622927925.0299737-CDS-E-fasciculatus_F_contig14359:1520..17151622927925.0299737-CDS-E-fasciculatus_F_contig14359:1520..1715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 1521..1715 +
1695995753.2528632-CDS-E-fasciculatus_F_contig14359:1520..17151695995753.2528632-CDS-E-fasciculatus_F_contig14359:1520..1715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 1521..1715 +
1622927925.0487783-CDS-E-fasciculatus_F_contig14359:2545..27551622927925.0487783-CDS-E-fasciculatus_F_contig14359:2545..2755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 2546..2755 +
1695995753.2622418-CDS-E-fasciculatus_F_contig14359:2545..27551695995753.2622418-CDS-E-fasciculatus_F_contig14359:2545..2755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14359 2546..2755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14359.3171.1

>prot_E-fasciculatus_F_contig14359.3171.1 ID=prot_E-fasciculatus_F_contig14359.3171.1|Name=mRNA_E-fasciculatus_F_contig14359.3171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=286bp
AAAEDEANGAGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHP
TAAAGNDIGDSAGNGAGGGPARGGSGGGGGARESRRQALLSCLRPFSALG
SGIEAEKQFARAVMQPFLEARFTPGIVDGSERGSSKGLGPLLNELLAYVK
EVAGDAVEAAEDMFASPAGLDLECSPLGETEEKQEEAKAKAVKEVDVMAP
LPVDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAA
IAGGEKRPRIRQRLLGQPSVAEFKARWNLPIYFQLR
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mRNA from alignment at E-fasciculatus_F_contig14359:109..2755+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14359.3171.1 ID=mRNA_E-fasciculatus_F_contig14359.3171.1|Name=mRNA_E-fasciculatus_F_contig14359.3171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2647bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14359:109..2755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCTGCCGAGGACGAGGCTAACGGTGCGGGCGACGCCGACGCTACCTC TCTCCTGCGAGGCATGTCCTCCAGGGCCTCTCGCGTGGAAGCCGAGATCA CCCGCCGCCTGCGGTCGGAGTTCGCCTCCCTGCTCAAGCCTCGGCACCCT ACCGCTGCTGCCGGCAACGACATTGGGGATTCCGCGGGGAACGGAGCCGG CGGTGGCCCGGCGCGGGGGGGTTCGGGGGGTGGCGGTGGCGCACGAGAGA GCAGGAGGCAGGCGCTGCTGAGCTGCCTGAGACCATTCTCGGCCCTCGGG AGCGGTATCGAGGCGGAGAAGCAGTTTGCGAGGTGCGGGTGGGAGTATGT CGGTTTGGTTTCCCGACTGTGTGTGGGTCGCACGGTTCTGTGGAGGGGTT GTTCGCTAACTGTCAATGAACCTGGTCCTCGCGTGAAGTCCACAGTGTGG TGCTCTCTGGCATTTAGATTTTCGGGGAGCGGGGAGTATGTGATGGTCGG CGGGAGCGCAGATTCGTGAAAATATTCATGTGTCTGTGTGCTCGATCTAG GCAATCCCTAGGGATGCGGACGCAAGACTACGAAAGGCTGACTGTGTACA AGTTTTCGACACCCTTTCATTTTCCACCATATCGTTCCTCATTGCAGCGT GTCAAGACTAACCGATTGAAAAACATCGTCTCATTGAAAAAGCCGCCTTC CATTTCGTCTCCTCGTCCATTCCTTGCTTCCGTCTCCCTTACGACAAGTA TGCAGTACCGGTGTGCGATATATCACGACCACTCTCTACAGTCGAAACCT GTTTATGCTTGTGTTGTTGTGGACAGCTAATTCCCCTTATTTAGCATCAC CCCTCGGTATATGTTTGTCACTGAACGTGTCCTTTTGTCCCCCATCATGA TTTGTCCGCCTTCTTGTATTCCGACGTAATATATTCAGGGCCGTAATGCA GCCTTTTCTCGAGGCGAGGTTTACCCCCGGCATTGTGGACGGGAGCGAGA GGGGGTCGAGCAAGGGGCTAGGGCCCCTGCTGAACGAGCTTCTGGCATAC GTGAAAGAGGTGAGAATTGAGTGAATGTGTTTTTTTTCGCTATGGTGGCA TCGACACCACTGCTCGGCTGGCCGGCGGTTGTTGACGTCCCTGGCAGCGA GACAGCGGAAAAGAGAAAGGGAGGAGGCGATAGTGTAAGTGTCGGTGTTT CATGGTTATGATTGTTGTTGGCGGGGGCCGCGTTCACAACACGTTCGTGT TTTGGGTGCGGTGTTAGTCTTGAGTATGTATGTGTGTGCGTTTTGCTCTT TTCAGCATCGATTGCAGTTGGCGACAATGACCAGAAAAGGAACATTGAAA ACGCCAGCCCAATCTCAATCTTATCCGGACACTCCACGAAAGCACTTCCC CCGCCCGTTCAGGTGGCTGGGGACGCAGTAGAGGCCGCGGAGGACATGTT TGCCTCTCCCGCCGGTCTCGACCTCGAATGCTCTCCTCTTGGGGAGACGG AGGAGAAACAGGAGGAGGCCAAGGCGAAAGCCGTGAAGGAGGTGGATGTC ATGGCTCCGCTCCCCGTGGACTTGGTGTGCAACGGGGTGTGGCGGCCGGT CCAACAGGTGCACACCCCCGCTTGTGGCTGGTTTCCTCTTGTTTTTTGGT CGAGTTCTTGCGGTTGTGGCCGGTGCTTCCGTGTTTTGCGATGGTTCGCA ATCCAACGAAGAAAACGCAGCTCTCACGACGACAGCATCGTGACGTATCA GTTTTATTTTCTTTTTTTGCAGCTCGGCCCTCCGTTTGCGCAGACCAATA GCTTTCCTGCTTCCTCGCTTGTCTTCAAAATGAATCCGGTGAAGCACACA TTGGCTTTGGTCAACGCGCGCACCCTTGCAGCCTTTTTCATCTCCTGCTT TGTTGAGCGGGAGCGAGAGTCAAGGTTTAACGTCAAACCTAAGTCAACCA CGAGCAACATCCAAGTTAGCGTTACCCATGTCCCCAACTCTACTTGGGAG ATAGTCTGTCGGCGTTCACCAGCCTGATCAAACAGCAGCACCCACGATTG TTGTTCATGCAAGGAATACGTTCGAGGGTGCTCGTAGGGTCTGCTTGTTT TTTTTTAGTGTGTTGTCAGCACCGATGGGGGTGAGGAAGTTAGATAGCTG TCGTGAACCCTCTCCACGCCGTGTATTTCACCCCCTGGACTGTGAATCTG CGCTCCTATGGGTGGAATCCTTGTTCTGCCCTGCCCCCCCCGAGACCCAG AAAGACGCGAAGCGAGTACAGTGTTCCCCTCGGGATGCACGAGACGACAC ATGGATCAATTCAAGTGTTGTCCTACGATCCACAGACGACTCGCCTCTCT TTTTTGCGCCGTGTCTGAGTATCCGGTTCGTCTGTTGATGGTGGTCTTCG CTTTGCCGGTTCACGCTGGCAAACCAACCATGTGCAGGTCCTCATGACGC GACTGTCCTCCATCTTCGCCACCGGCATGGTGGCGGCCCAGCACTCGAAC TTCGTGCTGTGCATGGAGTTCTTGGAGGGGCTGGCCGCCATCGCGGGGGG CGAGAAGCGTCCCCGTATCCGCCAGAGGCTTCTCGGACAGCCGTCGGTGG CGGAGTTCAAGGCACGCTGGAACCTCCCCATTTACTTCCAGCTAAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14359:109..2755+

>mRNA_E-fasciculatus_F_contig14359.3171.1 ID=mRNA_E-fasciculatus_F_contig14359.3171.1|Name=mRNA_E-fasciculatus_F_contig14359.3171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1716bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14359:109..2755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCTGCCGAGGACGAGGCTAACGGTGCGGGCGACGCCGACGCTACCTC
TCTCCTGCGAGGCATGTCCTCCAGGGCCTCTCGCGTGGAAGCCGAGATCA
CCCGCCGCCTGCGGTCGGAGTTCGCCTCCCTGCTCAAGCCTCGGCACCCT
ACCGCTGCTGCCGGCAACGACATTGGGGATTCCGCGGGGAACGGAGCCGG
CGGTGGCCCGGCGCGGGGGGGTTCGGGGGGTGGCGGTGGCGCACGAGAGA
GCAGGAGGCAGGCGCTGCTGAGCTGCCTGAGACCATTCTCGGCCCTCGGG
AGCGGTATCGAGGCGGAGAAGCAGTTTGCGAGGCTGCTGCCGAGGACGAG
GCTAACGGTGCGGGCGACGCCGACGCTACCTCTCTCCTGCGAGGCATGTC
CTCCAGGGCCTCTCGCGTGGAAGCCGAGATCACCCGCCGCCTGCGGTCGG
AGTTCGCCTCCCTGCTCAAGCCTCGGCACCCTACCGCTGCTGCCGGCAAC
GACATTGGGGATTCCGCGGGGAACGGAGCCGGCGGTGGCCCGGCGCGGGG
GGGTTCGGGGGGTGGCGGTGGCGCACGAGAGAGCAGGAGGCAGGCGCTGC
TGAGCTGCCTGAGACCATTCTCGGCCCTCGGGAGCGGTATCGAGGCGGAG
AAGCAGTTTGCGAGGGCCGTAATGCAGCCTTTTCTCGAGGCGAGGTTTAC
CCCCGGCATTGTGGACGGGAGCGAGAGGGGGTCGAGCAAGGGGCTAGGGC
CCCTGCTGAACGAGCTTCTGGCATACGTGAAAGAGGGCCGTAATGCAGCC
TTTTCTCGAGGCGAGGTTTACCCCCGGCATTGTGGACGGGAGCGAGAGGG
GGTCGAGCAAGGGGCTAGGGCCCCTGCTGAACGAGCTTCTGGCATACGTG
AAAGAGGTGGCTGGGGACGCAGTAGAGGCCGCGGAGGACATGTTTGCCTC
TCCCGCCGGTCTCGACCTCGAATGCTCTCCTCTTGGGGAGACGGAGGAGA
AACAGGAGGAGGCCAAGGCGAAAGCCGTGAAGGAGGTGGATGTCATGGCT
CCGCTCCCCGTGGACTTGGTGTGCAACGGGGTGTGGCGGCCGGTCCAACA
GGTGGCTGGGGACGCAGTAGAGGCCGCGGAGGACATGTTTGCCTCTCCCG
CCGGTCTCGACCTCGAATGCTCTCCTCTTGGGGAGACGGAGGAGAAACAG
GAGGAGGCCAAGGCGAAAGCCGTGAAGGAGGTGGATGTCATGGCTCCGCT
CCCCGTGGACTTGGTGTGCAACGGGGTGTGGCGGCCGGTCCAACAGGTCC
TCATGACGCGACTGTCCTCCATCTTCGCCACCGGCATGGTGGCGGCCCAG
CACTCGAACTTCGTGCTGTGCATGGAGTTCTTGGAGGGGCTGGCCGCCAT
CGCGGGGGGCGAGAAGCGTCCCCGTATCCGCCAGAGGCTTCTCGGACAGC
CGTCGGTGGCGGAGTTCAAGGCACGCTGGAACCTCCCCATTTACTTCCAG
CTAAGGGTCCTCATGACGCGACTGTCCTCCATCTTCGCCACCGGCATGGT
GGCGGCCCAGCACTCGAACTTCGTGCTGTGCATGGAGTTCTTGGAGGGGC
TGGCCGCCATCGCGGGGGGCGAGAAGCGTCCCCGTATCCGCCAGAGGCTT
CTCGGACAGCCGTCGGTGGCGGAGTTCAAGGCACGCTGGAACCTCCCCAT
TTACTTCCAGCTAAGG
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