mRNA_E-fasciculatus_F_contig14293.3133.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14293.3133.1
Unique NamemRNA_E-fasciculatus_F_contig14293.3133.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.880e-38
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGST VATARVICSCGIPRFKTR+GWISEWLRGGENELVVELL
Sbjct: 6691 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTVVATARVICSCGIPRFKTRRGWISEWLRGGENELVVELL 6762          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.920e-34
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            YLLKVVYSKGATMRDGVEIDLAA VGNLPFGST VATARVICSCGIPR+KTR+GW+SEWLRG  NE VVE+L
Sbjct: 7292 YLLKVVYSKGATMRDGVEIDLAAAVGNLPFGSTVVATARVICSCGIPRYKTRRGWVSEWLRGEGNERVVEVL 7363          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A1Z5KPP7_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPP7_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 3.160e-12
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            Y L++V  +GA +RDG+EID  A VGN+  G   VA  R I S GI R++T +GW+SE  RG   E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNMEMGEVVVADDRCINSSGIMRYRTNRGWVSEMTRGHGREPIAEVL 1133          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S2K548_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K548_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.130e-12
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            Y L++V   GA +RDG+EID  A VGNL  G    AT R I SCG+ R+   +GWISE  RG   E + E++
Sbjct:  291 YKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVM 362          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S2K3F7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3F7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.260e-12
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            Y L++V   GA +RDG+EID  A VGNL  G    AT R I SCG+ R+   +GWISE  RG   E + E++
Sbjct:  291 YKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVM 362          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A1Z5JHS1_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHS1_FISSO)

HSP 1 Score: 68.9 bits (167), Expect = 5.890e-12
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            Y L++V  +GA +RDG+EID  A VGNL  G   VA  R I S GI R++T +GW+SE  RG   E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNLEMGEVVVAYDRCINSSGIMRYRTIRGWVSEMTRGHGREPIAEVL 1133          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S3XV18_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV18_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 3.970e-11
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    7 LKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTR----KGWISEWLRGGENELVVELL 216
            L+V+Y  GA +R G+EID + VVG +  G+   A  R + + G+ R + R    +GWISE +RGG+ +L+VE+L
Sbjct:   61 LRVIYEHGAVVRSGLEIDTSEVVGTVEAGAVVAALERRVNASGVARHRVRHRGAQGWISERIRGGDEQLIVEVL 134          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: B7G082_PHATC (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC)

HSP 1 Score: 63.9 bits (154), Expect = 3.420e-10
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            + L++V  +GA +RDG+EID  A VGN+  G    +  R + S GI R++T +GW+SE  RG   E + E++
Sbjct: 1158 FRLRIVCPEGAVVRDGIEIDSCATVGNMEMGEVVESFDRCVNSSGILRYRTTRGWVSEMTRGHGREPIAEIV 1229          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S2E6E7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6E7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.040e-10
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENE 198
            Y L++V  +GA +RDG+EID  A +G+L  G    A  R I SCG+ R++T +GW+SE  RG   E
Sbjct:  284 YRLRIVCPEGAIVRDGIEIDSCANIGSLEMGEVVEAFDRCINSCGVLRYRTSRGWVSEQTRGHGRE 349          
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: K0TMW7_THAOC (UBA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TMW7_THAOC)

HSP 1 Score: 60.1 bits (144), Expect = 7.600e-9
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
            Y  ++V  +GA +RDG++ID    VG L  G    A  R I + GI R++T +GW+SE+ RG   E + E++
Sbjct:  248 YRFRIVCQEGAIVRDGIDIDRCENVGGLEMGEVVSAADRCINASGILRYRTDRGWVSEYTRGHGRENIAEVI 319          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI1.880e-3897.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE3.920e-3487.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z5KPP7_FISSO3.160e-1247.22HECT-type E3 ubiquitin transferase n=1 Tax=Fistuli... [more]
A0A7S2K548_9STRA4.130e-1247.22Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2K3F7_9STRA4.260e-1247.22Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1Z5JHS1_FISSO5.890e-1248.61HECT-type E3 ubiquitin transferase n=1 Tax=Fistuli... [more]
A0A7S3XV18_HETAK3.970e-1141.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B7G082_PHATC3.420e-1040.28HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S2E6E7_9STRA4.040e-1045.45Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
K0TMW7_THAOC7.600e-938.89UBA domain-containing protein n=1 Tax=Thalassiosir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14293contigE-fasciculatus_F_contig14293:557..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.302841-CDS-E-fasciculatus_F_contig14293:556..7721622927920.302841-CDS-E-fasciculatus_F_contig14293:556..772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14293 557..772 -
1695995751.106153-CDS-E-fasciculatus_F_contig14293:556..7721695995751.106153-CDS-E-fasciculatus_F_contig14293:556..772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14293 557..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14293.3133.1prot_E-fasciculatus_F_contig14293.3133.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14293 557..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14293.3133.1

>prot_E-fasciculatus_F_contig14293.3133.1 ID=prot_E-fasciculatus_F_contig14293.3133.1|Name=mRNA_E-fasciculatus_F_contig14293.3133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFK
TRKGWISEWLRGGENELVVELL
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mRNA from alignment at E-fasciculatus_F_contig14293:557..772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14293.3133.1 ID=mRNA_E-fasciculatus_F_contig14293.3133.1|Name=mRNA_E-fasciculatus_F_contig14293.3133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14293:557..772- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCTGCTCAAGGTCGTGTACAGCAAGGGCGCGACCATGCGCGACGGGGT GGAGATCGACCTCGCCGCGGTCGTCGGCAACCTGCCCTTCGGGAGCACGG CCGTCGCCACCGCCCGGGTGATCTGCTCGTGCGGGATCCCCCGCTTCAAG ACCCGGAAGGGTTGGATAAGCGAGTGGCTCCGGGGCGGAGAGAACGAGCT CGTAGTCGAGCTGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14293:557..772-

>mRNA_E-fasciculatus_F_contig14293.3133.1 ID=mRNA_E-fasciculatus_F_contig14293.3133.1|Name=mRNA_E-fasciculatus_F_contig14293.3133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14293:557..772- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCTGCTCAAGGTCGTGTACAGCAAGGGCGCGACCATGCGCGACGGGGT
GGAGATCGACCTCGCCGCGGTCGTCGGCAACCTGCCCTTCGGGAGCACGG
CCGTCGCCACCGCCCGGGTGATCTGCTCGTGCGGGATCCCCCGCTTCAAG
ACCCGGAAGGGTTGGATAAGCGAGTGGCTCCGGGGCGGAGAGAACGAGCT
CGTAGTCGAGCTGCTGTACCTGCTCAAGGTCGTGTACAGCAAGGGCGCGA
CCATGCGCGACGGGGTGGAGATCGACCTCGCCGCGGTCGTCGGCAACCTG
CCCTTCGGGAGCACGGCCGTCGCCACCGCCCGGGTGATCTGCTCGTGCGG
GATCCCCCGCTTCAAGACCCGGAAGGGTTGGATAAGCGAGTGGCTCCGGG
GCGGAGAGAACGAGCTCGTAGTCGAGCTGCTG
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