mRNA_E-fasciculatus_F_contig14293.3133.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI) HSP 1 Score: 144 bits (363), Expect = 1.880e-38 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGST VATARVICSCGIPRFKTR+GWISEWLRGGENELVVELL
Sbjct: 6691 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTVVATARVICSCGIPRFKTRRGWISEWLRGGENELVVELL 6762
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE) HSP 1 Score: 132 bits (331), Expect = 3.920e-34 Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
YLLKVVYSKGATMRDGVEIDLAA VGNLPFGST VATARVICSCGIPR+KTR+GW+SEWLRG NE VVE+L
Sbjct: 7292 YLLKVVYSKGATMRDGVEIDLAAAVGNLPFGSTVVATARVICSCGIPRYKTRRGWVSEWLRGEGNERVVEVL 7363
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A1Z5KPP7_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPP7_FISSO) HSP 1 Score: 69.7 bits (169), Expect = 3.160e-12 Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
Y L++V +GA +RDG+EID A VGN+ G VA R I S GI R++T +GW+SE RG E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNMEMGEVVVADDRCINSSGIMRYRTNRGWVSEMTRGHGREPIAEVL 1133
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S2K548_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K548_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 4.130e-12 Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
Y L++V GA +RDG+EID A VGNL G AT R I SCG+ R+ +GWISE RG E + E++
Sbjct: 291 YKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVM 362
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S2K3F7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3F7_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 4.260e-12 Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
Y L++V GA +RDG+EID A VGNL G AT R I SCG+ R+ +GWISE RG E + E++
Sbjct: 291 YKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVM 362
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A1Z5JHS1_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHS1_FISSO) HSP 1 Score: 68.9 bits (167), Expect = 5.890e-12 Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
Y L++V +GA +RDG+EID A VGNL G VA R I S GI R++T +GW+SE RG E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNLEMGEVVVAYDRCINSSGIMRYRTIRGWVSEMTRGHGREPIAEVL 1133
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S3XV18_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV18_HETAK) HSP 1 Score: 63.9 bits (154), Expect = 3.970e-11 Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 7 LKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTR----KGWISEWLRGGENELVVELL 216
L+V+Y GA +R G+EID + VVG + G+ A R + + G+ R + R +GWISE +RGG+ +L+VE+L
Sbjct: 61 LRVIYEHGAVVRSGLEIDTSEVVGTVEAGAVVAALERRVNASGVARHRVRHRGAQGWISERIRGGDEQLIVEVL 134
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: B7G082_PHATC (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC) HSP 1 Score: 63.9 bits (154), Expect = 3.420e-10 Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
+ L++V +GA +RDG+EID A VGN+ G + R + S GI R++T +GW+SE RG E + E++
Sbjct: 1158 FRLRIVCPEGAVVRDGIEIDSCATVGNMEMGEVVESFDRCVNSSGILRYRTTRGWVSEMTRGHGREPIAEIV 1229
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: A0A7S2E6E7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6E7_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.040e-10 Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENE 198
Y L++V +GA +RDG+EID A +G+L G A R I SCG+ R++T +GW+SE RG E
Sbjct: 284 YRLRIVCPEGAIVRDGIEIDSCANIGSLEMGEVVEAFDRCINSCGVLRYRTSRGWVSEQTRGHGRE 349
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Match: K0TMW7_THAOC (UBA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TMW7_THAOC) HSP 1 Score: 60.1 bits (144), Expect = 7.600e-9 Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 1 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 216
Y ++V +GA +RDG++ID VG L G A R I + GI R++T +GW+SE+ RG E + E++
Sbjct: 248 YRFRIVCQEGAIVRDGIDIDRCENVGGLEMGEVVSAADRCINASGILRYRTDRGWVSEYTRGHGRENIAEVI 319 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14293.3133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14293.3133.1 >prot_E-fasciculatus_F_contig14293.3133.1 ID=prot_E-fasciculatus_F_contig14293.3133.1|Name=mRNA_E-fasciculatus_F_contig14293.3133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKback to top mRNA from alignment at E-fasciculatus_F_contig14293:557..772- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14293.3133.1 ID=mRNA_E-fasciculatus_F_contig14293.3133.1|Name=mRNA_E-fasciculatus_F_contig14293.3133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14293:557..772- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14293:557..772- >mRNA_E-fasciculatus_F_contig14293.3133.1 ID=mRNA_E-fasciculatus_F_contig14293.3133.1|Name=mRNA_E-fasciculatus_F_contig14293.3133.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14293:557..772- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |