mRNA_E-fasciculatus_F_contig14277.3121.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14277.3121.1
Unique NamemRNA_E-fasciculatus_F_contig14277.3121.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5JLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL0_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 8.070e-28
Identity = 64/93 (68.82%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 CRCKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIEDTARPQPPVEIRPQPSPRVVNAFALFLASRKQQESHGAEQNDM 281
            CRCKDRKCSLAC  RSRCT  R ASA VR GG     RPTVGA QTGPI+  ARPQPP++ RPQPS RV NA ALF+AS K +ESH AEQ+D+
Sbjct:  265 CRCKDRKCSLACRCRSRCTLRRAASAPVRAGGRS-AFRPTVGASQTGPIDCVARPQPPIDTRPQPSLRVANAMALFIASIKPRESHAAEQSDV 356          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5JR25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR25_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.360e-27
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 CRCKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIEDTARPQPPVEIRPQPSPRVVNAFALFLASRKQQESHGAEQNDM 281
            CRCK++KCSLAC  R+RCT  R A+A VR GG    SRPTVGA QT  +E T+RPQPP+E RPQPS  V NA ALF AS +QQESHGAEQND+
Sbjct:  358 CRCKNKKCSLACGCRNRCTLRRAAAAPVRAGGRS-ASRPTVGASQTRRVEGTSRPQPPIESRPQPSDSVANAMALFAASMRQQESHGAEQNDV 449          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5KZT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.730e-26
Identity = 63/90 (70.00%), Postives = 64/90 (71.11%), Query Frame = 3
Query:    9 CKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIEDTARPQPPVEIRPQPSPRVVNAFALFLASRKQQESHGAEQND 278
            CKDRKCSLAC  R  CT  R A A VR GG    SRPTVGA QTGPIE  AR QPPV+ RPQPS  V NA  LF AS KQQESHGAEQND
Sbjct:  275 CKDRKCSLACGCRGHCTLRRAAPAPVRAGGMS-ASRPTVGASQTGPIEGVARHQPPVDTRPQPSVLVSNAMTLFAASMKQQESHGAEQND 363          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.290e-26
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 3
Query:    3 CRCKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIEDTARPQPPVEIRPQPSPRVVNAFALFLASRKQQESHGAEQNDM 281
            CRCK++KCSLAC  R+RCT  RVA A VR  G    SRPTVGAPQT  +E T RPQP +E RP+PS  V NA ALF AS +QQESHGAEQND+
Sbjct:  870 CRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRS-ASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASMRQQESHGAEQNDV 961          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.410e-26
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 3
Query:    3 CRCKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIEDTARPQPPVEIRPQPSPRVVNAFALFLASRKQQESHGAEQNDM 281
            CRCK++KCSLAC  R+RCT  RVA A VR  G    SRPTVGAPQT  +E T RPQP +E RP+PS  V NA ALF AS +QQESHGAEQND+
Sbjct: 1889 CRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRS-ASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASMRQQESHGAEQNDV 1980          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5L5C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.020e-25
Identity = 58/93 (62.37%), Postives = 67/93 (72.04%), Query Frame = 3
Query:    3 CRCKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIEDTARPQPPVEIRPQPSPRVVNAFALFLASRKQQESHGAEQNDM 281
            CRCK++KCSLAC   +RCT  R A A VR GG    S PTVGA QT  +E T+RPQPP+E RP+PS    NA ALF AS +QQESHGAEQND+
Sbjct:  182 CRCKNKKCSLACGCSNRCTLRRAAPAPVRAGGRS-ASPPTVGASQTRRVEGTSRPQPPIESRPRPSYSAANAMALFAASMRQQESHGAEQNDV 273          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.220e-25
Identity = 61/92 (66.30%), Postives = 63/92 (68.48%), Query Frame = 3
Query:    3 CRCKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIEDTARPQPPVEIRPQPSPRVVNAFALFLASRKQQESHGAEQND 278
            CRCKDRKCSLAC  R  CT      A VR GG    SRPTV A QTGPIE  ARPQPP++ RPQPS    NA ALF AS KQ ESHGAEQND
Sbjct:  400 CRCKDRKCSLACGCRGLCTLRWAVPAPVRAGGMS-ASRPTVDASQTGPIEGVARPQPPIDTRPQPSGLDANAMALFAASMKQHESHGAEQND 490          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.150e-18
Identity = 54/86 (62.79%), Postives = 58/86 (67.44%), Query Frame = 3
Query:    3 CRCKDRKCSLACD*RSRCTPCRVASASVRPGGGGPVSRPTVGAPQTGPIED----TARPQPPVEIRPQPSPRVVNAFALFLASRKQ 248
            CRCKDRKCSLAC   SRCT  R A A VR GG    SRPTVG  QTGPIE      ARPQ P++ RPQPS RV N+ AL +AS KQ
Sbjct:  497 CRCKDRKCSLACGRISRCTLRRAAPAHVRAGGRS-ASRPTVGTFQTGPIEGPIEGVARPQLPIDTRPQPSLRVANSIALLVASMKQ 581          
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Match: A0A6H5JK56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK56_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.560e-17
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   19 ESARSLATEEVVAPHVGWRRHPCDQGGGDLCPGLRWVLLKLGRSRIPPDPNHLS-RFDHSLPLVLSMPSHSFSPRGSSRNRME 264
            ESARSL   E VAP+VG RRHPC++GGG L P LRW+LLKLGRSR+ PDPNH S R  +++ L ++      S RG+ ++ ME
Sbjct:  902 ESARSLVAAEAVAPYVGRRRHPCEEGGG-LRPSLRWLLLKLGRSRVSPDPNHPSLRVANAMALFIASMKQKES-RGAEQSDME 982          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14277.3121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JLL0_9PHAE8.070e-2868.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR25_9PHAE1.360e-2766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZT5_9PHAE3.730e-2670.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG2_9PHAE6.290e-2665.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE6.410e-2665.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5C8_9PHAE7.020e-2562.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U7_9PHAE9.220e-2566.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJH5_9PHAE4.150e-1862.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK56_9PHAE1.560e-1755.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14277contigE-fasciculatus_F_contig14277:1385..1666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000220.1
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.7663245-CDS-E-fasciculatus_F_contig14277:1384..16661622927918.7663245-CDS-E-fasciculatus_F_contig14277:1384..1666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14277 1385..1666 -
1695995750.5063503-CDS-E-fasciculatus_F_contig14277:1384..16661695995750.5063503-CDS-E-fasciculatus_F_contig14277:1384..1666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14277 1385..1666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14277.3121.1prot_E-fasciculatus_F_contig14277.3121.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14277 1385..1666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14277.3121.1

>prot_E-fasciculatus_F_contig14277.3121.1 ID=prot_E-fasciculatus_F_contig14277.3121.1|Name=mRNA_E-fasciculatus_F_contig14277.3121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
GAGARTESARSLATEEVVAPHVGWRRHPCDQGGGDLCPGLRWVLLKLGRS
RIPPDPNHLSRFDHSLPLVLSMPSHSFSPRGSSRNRMERNRTT*
back to top

mRNA from alignment at E-fasciculatus_F_contig14277:1385..1666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14277.3121.1 ID=mRNA_E-fasciculatus_F_contig14277.3121.1|Name=mRNA_E-fasciculatus_F_contig14277.3121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=282bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14277:1385..1666- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGCAGGTGCAAGGACAGAAAGTGCTCGCTCGCTTGCGACTGAAGAAGT CGTTGCACCCCATGTCGGGTGGCGTCGGCATCCGTGCGACCAGGGGGGGG GGGACCTGTGTCCCGGCCTACGGTGGGTGCTCCTCAAACTGGGCCGATCG AGGATACCGCCCGACCCCAACCACCTGTCGAGATTCGACCACAGCCTTCC CCTCGTGTTGTCAATGCCTTCGCACTCTTTCTCGCCTCGAGGAAGCAGCA GGAATCGCATGGAGCGGAACAGAACGACATGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14277:1385..1666-

>mRNA_E-fasciculatus_F_contig14277.3121.1 ID=mRNA_E-fasciculatus_F_contig14277.3121.1|Name=mRNA_E-fasciculatus_F_contig14277.3121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14277:1385..1666- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGCAGGTGCAAGGACAGAAAGTGCTCGCTCGCTTGCGACTGAAGAAGT
CGTTGCACCCCATGTCGGGTGGCGTCGGCATCCGTGCGACCAGGGGGGGG
GGGACCTGTGTCCCGGCCTACGGTGGGTGCTCCTCAAACTGGGCCGATCG
AGGATACCGCCCGACCCCAACCACCTGTCGAGATTCGACCACAGCCTTCC
CCTCGTGTTGTCAATGCCTTCGCACTCTTTCTCGCCTCGAGGAAGCAGCA
GGAATCGCATGGAGCGGAACAGAACGACATGAGGTGCAGGTGCAAGGACA
GAAAGTGCTCGCTCGCTTGCGACTGAAGAAGTCGTTGCACCCCATGTCGG
GTGGCGTCGGCATCCGTGCGACCAGGGGGGGGGGGACCTGTGTCCCGGCC
TACGGTGGGTGCTCCTCAAACTGGGCCGATCGAGGATACCGCCCGACCCC
AACCACCTGTCGAGATTCGACCACAGCCTTCCCCTCGTGTTGTCAATGCC
TTCGCACTCTTTCTCGCCTCGAGGAAGCAGCAGGAATCGCATGGAGCGGA
ACAGAACGACATGA
back to top