mRNA_E-fasciculatus_F_contig14272.3120.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14272.3120.1
Unique NamemRNA_E-fasciculatus_F_contig14272.3120.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: A0A6H5KG61_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG61_9PHAE)

HSP 1 Score: 459 bits (1182), Expect = 3.380e-160
Identity = 219/228 (96.05%), Postives = 220/228 (96.49%), Query Frame = 1
Query:    1 FVAALFLATAFIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPFYHNEMLW-WVG 681
            FVA+LFL TA IPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWT ISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLP QLALLAYACHAVNTIPLTPLEF GFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSF SAWRLETDRLRDRNLPFYHNEMLW WV 
Sbjct:   74 FVASLFLGTAVIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPAQLALLAYACHAVNTIPLTPLEFLGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFASAWRLETDRLRDRNLPFYHNEMLWYWVA 301          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: A0A836CE88_9STRA (Fatty acid desaturase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE88_9STRA)

HSP 1 Score: 236 bits (602), Expect = 4.340e-70
Identity = 116/222 (52.25%), Postives = 147/222 (66.22%), Query Frame = 1
Query:    1 FVAALFLATAFIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPFYHNEM 666
            FV A F  +A IPD G +P P + HL +P  A KG+H GG W     YWAF  LP  D +VGVDTFN   A Y  L ER+ FR+ + IF   ++ALL ++   V T  LT  E  G+ VSV VY GG GI ++HEL+H++ + E+ LGR +  ++ YGHF VEHN GHH+ VAT EDPATARFGESF++FLPRCVV SF SA  +E  RLR   LP++HNE+
Sbjct:  295 FVTAAFALSAAIPDPGTAPWPTYAHLCLPIIAAKGLHAGGAWACSLIYWAFVLLPVLDALVGVDTFNHARAVYATLAERRAFRVTTCIFPLVEVALLLWSFREVATRELTVAEAVGYSVSVGVYAGGFGILIAHELLHRNTKFERLLGRIIIALMCYGHFNVEHNHGHHRTVATPEDPATARFGESFWSFLPRCVVNSFRSAVTIENARLRAEGLPWHHNEV 516          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: A0A377GK50_9GAMM (Alkane 1-monooxygenase 2 n=3 Tax=Legionellaceae TaxID=444 RepID=A0A377GK50_9GAMM)

HSP 1 Score: 180 bits (456), Expect = 9.890e-52
Identity = 90/205 (43.90%), Postives = 131/205 (63.90%), Query Frame = 1
Query:   67 FMHLAIPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPFYH-NEMLWWV 678
            ++ + +PF    G + GG +T + F   F  +P+ D V  VD  N    +  +L + K+F+I +WI++P Q   + YA + +  +PLT LEF GF +S+ + TGGIGITL+HEL+HK++ ++Q L + + V + YGHF++EH RGHH  VAT +DPAT+R GES Y FLPR +VGSF SA  +E  RL     P+YH N   WW+
Sbjct:   13 YLLVMLPFI---GFYFGGFYTFLPFIILFSMVPWMD-VWLVDPSNPDRTQEHILLKDKYFKILTWIYVPLQCCFVIYAAYLIVHVPLTALEFIGFSLSIGLLTGGIGITLAHELMHKNSMVDQLLSKILLVSVCYGHFFIEHVRGHHVHVATPKDPATSRLGESLYQFLPRTIVGSFRSALNIERMRLNRLGYPWYHLNNQFWWI 213          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: A0A378L8H5_9GAMM (Alkane monooxygenase n=1 Tax=Legionella steigerwaltii TaxID=460 RepID=A0A378L8H5_9GAMM)

HSP 1 Score: 178 bits (452), Expect = 4.010e-51
Identity = 87/205 (42.44%), Postives = 131/205 (63.90%), Query Frame = 1
Query:   67 FMHLAIPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPFYH-NEMLWWV 678
            ++ + +PF    G + G  +T + F+  F  +P  D ++ VD  N    +  +L + ++F++ +WI++P Q   + ++ + V   PLT  EF GF +S+ + TGGIGITL+HEL+HK++R +Q LG+A+ V + YGHF++EH RGHH  VAT +DPAT+R GES Y FLPR +VGSF SA  +E  RL  +  P YH N   WW+
Sbjct:   13 YLLVLLPF---MGFYFGSFYTFLPFFVLFTMIPLMDVLI-VDQSNPDSTQENMLLKDQYFKLLTWIYVPLQYCFMIFSAYLVVHFPLTVTEFIGFSLSIGLLTGGIGITLAHELMHKNSRTDQILGKALLVSVCYGHFFIEHVRGHHVHVATPKDPATSRLGESLYHFLPRTIVGSFRSALHIERKRLSRQGYPRYHLNNQFWWI 213          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: UPI00042A423E (alkane 1-monooxygenase n=1 Tax=Hugenholtzia roseola TaxID=1002 RepID=UPI00042A423E)

HSP 1 Score: 176 bits (447), Expect = 2.940e-50
Identity = 81/205 (39.51%), Postives = 130/205 (63.41%), Query Frame = 1
Query:   64 YFMHLAIPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPFYHNEMLWWV 678
            +F+   +P F++ G + GG    ++ ++ F  +P  D+++G DT N    + K   E+K++R  ++I++  Q A+L +AC+ +      PL   GF + +A   GGIGIT++HEL HK+ +IEQ+  + + + +SY HF++EHN+GHH  VAT  DPA++R  E+ YAF  R VVG + SAW++E DRL    LPFY N+ML++ 
Sbjct:   10 FFLAFLLPLFSILGYYVGGAANWLTVFFVFVLIPLFDYLIGKDTQNVEKEQEKQFSEQKYYRFITFIWVYVQWAMLFWACYVIAFGTWQPLHLVGFTLGIACVMGGIGITVAHELGHKNTKIEQFYSQILLLSVSYMHFFIEHNKGHHVHVATPLDPASSRKDETVYAFWLRSVVGGYRSAWKIENDRLARAKLPFYRNQMLYYT 214          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: A0A7G4RHJ9_9GAMM (Alkane 1-monooxygenase n=1 Tax=Legionella sp. PC997 TaxID=2755562 RepID=A0A7G4RHJ9_9GAMM)

HSP 1 Score: 174 bits (441), Expect = 1.850e-49
Identity = 83/205 (40.49%), Postives = 131/205 (63.90%), Query Frame = 1
Query:   67 FMHLAIPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPFYH-NEMLWWV 678
            ++ + +PF    G + GG +T + F+  F  +P+ D  + +D  N    E  +L + ++F++ +WI++P Q   +  A + +  +PLT  EF GF +S+ + TGGIGITL+HEL+HK+++++Q L + + V + YGHF++EH RGHH  VAT +DPAT+R GES Y FLPR ++GSF SA  +E  RL+    P+YH     WW+
Sbjct:   13 YLLVILPFI---GFYYGGFYTFLPFFILFTLVPWMDIWL-LDPSNPNPPEEHLLLKAQYFKLLTWIYVPLQCCFIILAAYLIAHVPLTAKEFIGFSLSIGLLTGGIGITLAHELMHKNSQVDQLLSKILLVSVCYGHFFIEHVRGHHVHVATSKDPATSRLGESLYQFLPRTIMGSFRSASNIERKRLKRLGYPWYHVKNQFWWI 213          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: S3UMY7_9LEPT (Putative alkane 1-monooxygenase n=4 Tax=Leptospira wolffii TaxID=409998 RepID=S3UMY7_9LEPT)

HSP 1 Score: 174 bits (441), Expect = 3.080e-49
Identity = 85/189 (44.97%), Postives = 123/189 (65.08%), Query Frame = 1
Query:   64 YFMHLAIPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRL 630
            + +   IP  AV G + GGG+  +S    F  LP  D +VG D  N ++ E  VL++  +FR  ++ +   Q AL+ +A   V +  L+ LE+ GFV+S+ + TGGIGIT++HEL HK+ +IEQW  + + + + Y HF++EHNRGHH  V+T EDPAT+R GESF++F PR V+GS  SAW+LE  RL
Sbjct:    9 FLIAFLIPLMAVAGYYLGGGFNFLSLAVVFGILPILDVLVGPDASNPKEEEVPVLQQEFYFRFLTYAWAWVQFALVVWALWEVQSHSLSTLEWVGFVLSIGINTGGIGITVAHELGHKNTKIEQWYSKFILMTVCYMHFFIEHNRGHHVNVSTHEDPATSRRGESFFSFYPRTVLGSLASAWKLEKKRL 197          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: A0A5F2B5P6_9LEPT (Alkane 1-monooxygenase n=7 Tax=Leptospira TaxID=171 RepID=A0A5F2B5P6_9LEPT)

HSP 1 Score: 174 bits (440), Expect = 3.940e-49
Identity = 86/198 (43.43%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   82 IPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRD--RNLPFYHNEML 669
            +P FAV G + GG +  ++F   F  LP  D V+G D  N  + E   L+   +FR  ++++   Q  L+ +A + V T  L+ LE++GFV+++ + TGGIGIT++HEL HKS +IEQW  + + + + Y HF++EHNRGHH  V+T EDPA++R GESFY F PR V GS+ SAW+LE  RL    ++     NEM+
Sbjct:   15 VPAFAVLGYYLGGAYNFLTFAIVFGLLPILDVVIGADPSNPAEEEVPALQNEFYFRFLTYVWAWVQFGLVLWALYEVQTKNLSTLEWWGFVLAIGINTGGIGITVAHELGHKSKKIEQWYSKFILMTVCYMHFFIEHNRGHHVNVSTHEDPASSRKGESFYRFYPRTVFGSYFSAWKLEAKRLSKAGKSALSLENEMI 212          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: UPI001ABD0E37 (Alkane 1-monooxygenase n=2 Tax=Roseivirga sp. E12 TaxID=2819237 RepID=UPI001ABD0E37)

HSP 1 Score: 173 bits (439), Expect = 4.690e-49
Identity = 81/201 (40.30%), Postives = 129/201 (64.18%), Query Frame = 1
Query:   82 IPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPF--YHNEMLWWV 678
            IP  A+ G + GG W  ++  + F F+P AD+++G D  N  D +  ++ E+ ++R+ ++I+   QL  L +    +    + P+   GF++S ++ TGGIGIT++HEL HK +++E+   R + + + Y HFY+EHNRGHH  VAT  DPAT+R GE+FYAF  R V+GS+ SAW+LE  RL  + + F  ++NEM+W+ 
Sbjct:   15 IPLLAILGFYLGGYWNFMASVFVFVFIPLADWIIGKDPENMTDEKAILVSEQFYYRLITYIWTFFQLGFLMWGAFVIAESAMEPIFLIGFILSFSLVTGGIGITVAHELGHKKSKLERVYSRIILMTVCYMHFYIEHNRGHHVYVATPRDPATSRKGENFYAFWLRSVIGSYFSAWKLERSRLERKGIKFWSFYNEMIWYT 215          
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Match: A0A7Y7BGN3_9BACT (Alkane 1-monooxygenase n=2 Tax=Cytophagia bacterium TaxID=2026730 RepID=A0A7Y7BGN3_9BACT)

HSP 1 Score: 172 bits (437), Expect = 9.080e-49
Identity = 84/199 (42.21%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   82 IPFFAVKGVHEGGGWTGISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYACHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRAMCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFGSAWRLETDRLRDRNLPF--YHNEMLW 672
            IP   + G + GG W  ++  + F  +P AD+++G D  N  + E  ++ E+ ++R  ++I+   Q+A L +    + T+PLT  E+ GFVVS A+ TGGIGIT++HEL HK +++E++  + + + + Y HFY+EHNRGHH  VAT  DPAT+R  E+F  F  R V GS+ SAWRLE +RLR R L    + N+M+W
Sbjct:   15 IPSLTILGFYLGGYWNYLTILFVFIIIPLADYLIGEDPENLSEDESMLIAEQFYYRFITFIWAFFQVAFLIWGVWMIATVPLTVTEWIGFVVSFALVTGGIGITVAHELGHKKSKLERFYAKLLLMTVCYMHFYIEHNRGHHVYVATPRDPATSRKNEAFPKFWVRSVFGSYFSAWRLEKERLRKRKLGIWSFDNQMIW 213          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14272.3120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG61_9PHAE3.380e-16096.05FA_desaturase domain-containing protein n=2 Tax=Ec... [more]
A0A836CE88_9STRA4.340e-7052.25Fatty acid desaturase-domain-containing protein n=... [more]
A0A377GK50_9GAMM9.890e-5243.90Alkane 1-monooxygenase 2 n=3 Tax=Legionellaceae Ta... [more]
A0A378L8H5_9GAMM4.010e-5142.44Alkane monooxygenase n=1 Tax=Legionella steigerwal... [more]
UPI00042A423E2.940e-5039.51alkane 1-monooxygenase n=1 Tax=Hugenholtzia roseol... [more]
A0A7G4RHJ9_9GAMM1.850e-4940.49Alkane 1-monooxygenase n=1 Tax=Legionella sp. PC99... [more]
S3UMY7_9LEPT3.080e-4944.97Putative alkane 1-monooxygenase n=4 Tax=Leptospira... [more]
A0A5F2B5P6_9LEPT3.940e-4943.43Alkane 1-monooxygenase n=7 Tax=Leptospira TaxID=17... [more]
UPI001ABD0E374.690e-4940.30Alkane 1-monooxygenase n=2 Tax=Roseivirga sp. E12 ... [more]
A0A7Y7BGN3_9BACT9.080e-4942.21Alkane 1-monooxygenase n=2 Tax=Cytophagia bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14272contigE-fasciculatus_F_contig14272:105..3084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.5
Seed ortholog evalue2.4e-127
Seed eggNOG ortholog2880.D7FNV7
EggNOG free text desc.Fatty acid desaturase
EggNOG OGs2CXPI@1,2RYW0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionalkane 1-monooxygenase
Ec32 orthologEc-12_003200.1
Exons6
Model size696
Cds size696
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14272.3120.1prot_E-fasciculatus_F_contig14272.3120.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14272 105..3084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.6238115-CDS-E-fasciculatus_F_contig14272:104..2181622927918.6238115-CDS-E-fasciculatus_F_contig14272:104..218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 105..218 +
1695995750.4469151-CDS-E-fasciculatus_F_contig14272:104..2181695995750.4469151-CDS-E-fasciculatus_F_contig14272:104..218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 105..218 +
1622927918.639339-CDS-E-fasciculatus_F_contig14272:703..8251622927918.639339-CDS-E-fasciculatus_F_contig14272:703..825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 704..825 +
1695995750.4600987-CDS-E-fasciculatus_F_contig14272:703..8251695995750.4600987-CDS-E-fasciculatus_F_contig14272:703..825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 704..825 +
1622927918.6563218-CDS-E-fasciculatus_F_contig14272:1041..11511622927918.6563218-CDS-E-fasciculatus_F_contig14272:1041..1151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 1042..1151 +
1695995750.470258-CDS-E-fasciculatus_F_contig14272:1041..11511695995750.470258-CDS-E-fasciculatus_F_contig14272:1041..1151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 1042..1151 +
1622927918.6844866-CDS-E-fasciculatus_F_contig14272:1633..17291622927918.6844866-CDS-E-fasciculatus_F_contig14272:1633..1729Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 1634..1729 +
1695995750.4814785-CDS-E-fasciculatus_F_contig14272:1633..17291695995750.4814785-CDS-E-fasciculatus_F_contig14272:1633..1729Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 1634..1729 +
1622927918.6997259-CDS-E-fasciculatus_F_contig14272:2062..21651622927918.6997259-CDS-E-fasciculatus_F_contig14272:2062..2165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 2063..2165 +
1695995750.4895039-CDS-E-fasciculatus_F_contig14272:2062..21651695995750.4895039-CDS-E-fasciculatus_F_contig14272:2062..2165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 2063..2165 +
1622927918.7172065-CDS-E-fasciculatus_F_contig14272:2933..30841622927918.7172065-CDS-E-fasciculatus_F_contig14272:2933..3084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 2934..3084 +
1695995750.497658-CDS-E-fasciculatus_F_contig14272:2933..30841695995750.497658-CDS-E-fasciculatus_F_contig14272:2933..3084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14272 2934..3084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14272.3120.1

>prot_E-fasciculatus_F_contig14272.3120.1 ID=prot_E-fasciculatus_F_contig14272.3120.1|Name=mRNA_E-fasciculatus_F_contig14272.3120.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=232bp
FVAALFLATAFIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTGISFYWA
FFFLPFADFVVGVDTFNKRDAEYKVLRERKWFRIASWIFLPTQLALLAYA
CHAVNTIPLTPLEFFGFVVSVAVYTGGIGITLSHELVHKSNRIEQWLGRA
MCVMISYGHFYVEHNRGHHKLVATDEDPATARFGESFYAFLPRCVVGSFG
SAWRLETDRLRDRNLPFYHNEMLWWVGWLLH*
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mRNA from alignment at E-fasciculatus_F_contig14272:105..3084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14272.3120.1 ID=mRNA_E-fasciculatus_F_contig14272.3120.1|Name=mRNA_E-fasciculatus_F_contig14272.3120.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14272:105..3084+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGTTGCCGCGCTCTTCCTGGCGACAGCCTTCATCCCAGACTCGGGGGA CAGCCCGTCCCCGTACTTCATGCACCTGGCAATCCCCTTCTTCGCCGTCA AGGGCGTGCACGAGGTGCGTAGGGGGTCTCCGCTCGGGAAACGTTTCTCG ATGAACATACGCGTGCGGACCTGCTTTCCTGCTTCAATGCATGCTACGTC AGTCTACACATGTCCTAGGGGCAGATCAATAAAAGGATATGGATGGCGGG TTTTGCGTGGCAGCGCGGAACGGTTTGGCGGTGCTTGCCTGCGTGTGTGT GTGTCATCGCTATACGTGTAAGGGGGGAGCACTTGTTGGTGCTGTCGGAG GGGGTCGAGGTGGGATGACCCCCGGGCGGGGATCGACAAAAAGCCGAAGA AGTTATGGACCCTGTTCCTGCTGTTTTCTCCTCGGCCGCTCAAAGCACAG ACCGCGTTTGTTTCTGTCGTATGCTACTGCCGTTTTGTCGTTTTGTCTCT GCCGCCGCGGTGGTGGTGGTGCTGGCTTGACACCCCGCCACGAACATGTG TTCCTTTGCCGTACCGCCACCGCCGACAACAACGACAACGAACCAACAGG GCGGCGGGTGGACGGGGATAAGCTTCTACTGGGCGTTCTTCTTCCTACCC TTCGCCGACTTCGTCGTGGGCGTGGACACGTTCAACAAGCGCGACGCAGA GTACAAGGTCCTGCGAGAAAGGTCGGTTGTTCGATTGTTTGCGCCGCATA GTGGGCGAAAAGAACTTCGCCGCGACAATGTTGAATGATGCATTGATGAA GGGTCACGCAGGCCGCACCCGTCCCATCTTTCTCCCGAGCGGACAACCAG AGTTTCATATGCAAGACACAGAACACCCCCCCCCTCCCCTCTATCACATA CAATTTTCCTGGAACCCCCGACGGCTTTGATCGACAGGAAATGGTTCCGG ATAGCCTCCTGGATATTCCTTCCGACCCAGCTGGCTCTCTTGGCCTACGC TTGCCACGCCGTCAACACCATCCCTCTGACGCCCCTCGAGTTTTTCGGTG AGCGGGGGGGGCGGGCGAACTCTTTATGTTTTGCATGCCTGAGTGGTTCG ACCATTGACCACGCGTTTTCGAGAGGACGGAGCATGTTCGGTGAGGGGGG TAGCCTTTGGCGCCGTATGTCGGGAAACAAGCGTTGCGGTCCCTCTACAC GACCGTGGCACGGGGACCAGTCCCAGTCCCGAAAACCGTTGAACCATAAT CGAACGCCTCTTTTCGTTCTTTTGCGTTATAGACTGAAGTCAATGCCGCG GCTTGATGCATCCATCGCCCCTCTTGACCCCACCCCCCCGCGTCTGTTGA GGGAAAGAGGTGCCGCACTCTGGTCATGTTTAAGGGGGACCTTGAGAGAG TCGTTTCATCGTTTTCCCGCTGTCTTCTGCGCCACGCACGACTGTTTTGT TGTTCTCCTTTTGTCTCCTTTTGTCTTCTTCTTCTGTTCGTTTTCTTGGT GGTGGTGGTGGTGGTGGTGATGTGGTCAGGGTTTGTGGTGTCCGTCGCGG TGTACACGGGCGGGATCGGCATCACCCTTAGCCACGAGCTGGTGCACAAG TCCAACCGTATCGAGCAGTGGCTGGGTGAGGAGAGCGAGGAGACACCGGC CGAAACTATTGACGGCCGAGAGGCTCACCATCGGTCGTGTTGCGCCTGTT GGTAGTAGCTCCTAATGGCACGGTTGCTGCGGTCAGGTTGTCTCAATTGT TGGGACAAGCGTTGGCTCCCCGCCGCCCTCTTTTGCACTCTGCTACGCTG GCCACACGGCTACTACGTGGCTGTCGGCGGACCCGCGGTGCCCCCTCCCC TGATATGTAGCTCTCATTCTCTGCCATCCCCTGCAGTAGCAACACCAATA CGGTACTATTTTTCTTACTCTTGTCTGGGCCTCCTCCTATCTCTCACGGG AAAACCAGGACGAGCGATGTGCGTCATGATAAGCTACGGCCACTTCTACG TCGAGCACAACAGGGGACACCACAAGCTTGTGGCGACGGACGAGGACCCG GCCACCGCAAGGTACAGCAGTAGGCTGCCACCGTGTCTGCCCTTGCCGTG CTGCCTGGTTCGACGCGGGCCGGTAGAGGGCAGCGCCCTCCGTGCACACC ACCGCGCGACACGACACGCCACAGCTAGCCGGTATCTCCCATTGGAGGCG TATGGTGTTTTTCGCTCTATGCTTCGCCGACCGCGGTACACAACGGCACA ACACACCGTGGTTTCCTTGCAGAACAAGTTTCAGGAGGCGTTTTTTGTTT GTTGTCTTTTCGGTTTTCATTGTGGGGGAGGTTAGCCTGCTACGCCGGTG CGGTTTCGACCCCGTGCGGTCACGAAAAAAAAACCACGCTGTCTCTAAAC CCGCTGTTTTAGCCTGTTGTTGTCGTTCGGTATCCCTCGCCCCTATCCTT CGTCCCGCTGCCTTTCTTCTTTCCTTTGTTCGCCCTTTCCGACGGCCTCG CCGCCGATCTCCCGCGGCCGGTTGAGGGACAGGAGACGATAAGACGGGGA TAACCAAGATAGGGCGGACGGACAGACCACCGAAAAATCGACACCAAACT TCATACGTCGCGTTGATGTTGTTTGTGGCCCAATCGAAGCCCCATCCCCA TCGCCAGGCCACTACAATATGCTCGTGTTGCTGGCGTTGCTGGCGTTGAC TCAACCGAAACCTAATGCCATCCCCCATGGCCGGGTCACCACCCTTACGT TCCTGTGTTGGCGTTGGCTCGATCGAACCCCCCCCCCCCCCCCCCCCCCC CCCCCCGCCGGTCTCCCCTGCGCTGCCAGGTTTGGGGAGTCCTTCTACGC GTTCCTTCCTCGCTGCGTGGTCGGGAGCTTCGGCAGCGCGTGGAGGCTGG AGACCGACCGTCTCCGCGACAGGAACCTCCCTTTCTACCACAACGAGATG CTCTGGTGGGTGGGTTGGCTGCTGCACTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14272:105..3084+

>mRNA_E-fasciculatus_F_contig14272.3120.1 ID=mRNA_E-fasciculatus_F_contig14272.3120.1|Name=mRNA_E-fasciculatus_F_contig14272.3120.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14272:105..3084+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGTTGCCGCGCTCTTCCTGGCGACAGCCTTCATCCCAGACTCGGGGGA
CAGCCCGTCCCCGTACTTCATGCACCTGGCAATCCCCTTCTTCGCCGTCA
AGGGCGTGCACGAGTTCGTTGCCGCGCTCTTCCTGGCGACAGCCTTCATC
CCAGACTCGGGGGACAGCCCGTCCCCGTACTTCATGCACCTGGCAATCCC
CTTCTTCGCCGTCAAGGGCGTGCACGAGGGCGGCGGGTGGACGGGGATAA
GCTTCTACTGGGCGTTCTTCTTCCTACCCTTCGCCGACTTCGTCGTGGGC
GTGGACACGTTCAACAAGCGCGACGCAGAGTACAAGGTCCTGCGAGAAAG
GGCGGCGGGTGGACGGGGATAAGCTTCTACTGGGCGTTCTTCTTCCTACC
CTTCGCCGACTTCGTCGTGGGCGTGGACACGTTCAACAAGCGCGACGCAG
AGTACAAGGTCCTGCGAGAAAGGAAATGGTTCCGGATAGCCTCCTGGATA
TTCCTTCCGACCCAGCTGGCTCTCTTGGCCTACGCTTGCCACGCCGTCAA
CACCATCCCTCTGACGCCCCTCGAGTTTTTCGGAAATGGTTCCGGATAGC
CTCCTGGATATTCCTTCCGACCCAGCTGGCTCTCTTGGCCTACGCTTGCC
ACGCCGTCAACACCATCCCTCTGACGCCCCTCGAGTTTTTCGGGTTTGTG
GTGTCCGTCGCGGTGTACACGGGCGGGATCGGCATCACCCTTAGCCACGA
GCTGGTGCACAAGTCCAACCGTATCGAGCAGTGGCTGGGGTTTGTGGTGT
CCGTCGCGGTGTACACGGGCGGGATCGGCATCACCCTTAGCCACGAGCTG
GTGCACAAGTCCAACCGTATCGAGCAGTGGCTGGGACGAGCGATGTGCGT
CATGATAAGCTACGGCCACTTCTACGTCGAGCACAACAGGGGACACCACA
AGCTTGTGGCGACGGACGAGGACCCGGCCACCGCAAGGACGAGCGATGTG
CGTCATGATAAGCTACGGCCACTTCTACGTCGAGCACAACAGGGGACACC
ACAAGCTTGTGGCGACGGACGAGGACCCGGCCACCGCAAGGTTTGGGGAG
TCCTTCTACGCGTTCCTTCCTCGCTGCGTGGTCGGGAGCTTCGGCAGCGC
GTGGAGGCTGGAGACCGACCGTCTCCGCGACAGGAACCTCCCTTTCTACC
ACAACGAGATGCTCTGGTGGGTGGGTTGGCTGCTGCACTAGGTTTGGGGA
GTCCTTCTACGCGTTCCTTCCTCGCTGCGTGGTCGGGAGCTTCGGCAGCG
CGTGGAGGCTGGAGACCGACCGTCTCCGCGACAGGAACCTCCCTTTCTAC
CACAACGAGATGCTCTGGTGGGTGGGTTGGCTGCTGCACTAG
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