mRNA_E-fasciculatus_F_contig1425.3109.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1425.3109.1
Unique NamemRNA_E-fasciculatus_F_contig1425.3109.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: D8LUB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB0_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 4.290e-85
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGSCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSMAEAAAAEDGNRLIHVASYEAWDA 361
            CYNQCSGNGEC+PQG CDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLC+CHEGFTGRACERMSCPNDCN HGQCLSMAEAAAAEDGNRLIHVASYEAWDA
Sbjct:   28 CYNQCSGNGECDPQGFCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCICHEGFTGRACERMSCPNDCNGHGQCLSMAEAAAAEDGNRLIHVASYEAWDA 147          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: A0A7S3JZB7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZB7_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.380e-37
Identity = 69/130 (53.08%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGSCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSMAEAAAAEDG---NRLIHV-------ASYEAWDA 361
            C+  C+ NG CN +G CDC++G+ G DCSF  CP   AW+DIASG D+AH  A CSN G CN  +G+C C   F G ACERM CPNDC+  G CLS+AEAAA  DG   NR +H         SY  WDA
Sbjct:   19 CHKNCNKNGLCNTEGRCDCFEGWKGADCSFRTCPQGRAWSDIASGEDEAHGYAECSNRGNCNTRSGMCECDTLFEGNACERMKCPNDCSEKGMCLSLAEAAATFDGYTLNRSMHRYQEYSLGVSYGVWDA 148          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: A0A7S1UCW7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCW7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.460e-32
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 2
Query:    2 CYNQCSGNGEC-NPQGSCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSM 292
            C N C+G+GEC N +  C C+DGY G DCS   CP+  AW D+A GTDDAHN+A CSNMG C+  TG C+C  GFTG ACERM C + CN  G C SM
Sbjct:   23 CPNMCNGHGECKNAERVCTCFDGYTGGDCSLRLCPTHEAWVDVAQGTDDAHNEAECSNMGICDTATGTCICRTGFTGAACERMECGSACNGRGTCESM 120          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: A0A482S5I4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5I4_9ARCH)

HSP 1 Score: 120 bits (302), Expect = 3.080e-32
Identity = 61/121 (50.41%), Postives = 71/121 (58.68%), Query Frame = 2
Query:    2 CYNQCSGNGECN-PQGSCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSMAEAAAAEDGNRLIHVASYEAWDA 361
            C N CS +G C+ P   C+C+DGY G DCS   CP   AWAD     D+AH  A CSN G C+  TGLCVC EGF G ACER SCPN+CN  G+C SM+  A  +D       A    WDA
Sbjct:   33 CPNACSKHGRCHSPSRQCECFDGYTGADCSLRICPFDRAWADKGIQDDNAHRPAECSNKGLCDRTTGLCVCQEGFEGIACERQSCPNNCNGVGECQSMSFYALTKDPGSGSVYAYNNVWDA 153          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: A0A0A7CMC0_9STRA (Secreted protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CMC0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.390e-31
Identity = 63/120 (52.50%), Postives = 75/120 (62.50%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGSCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSMAEAAAAEDGNRLIHVASYEAWDA 361
            C N CSG+G+C  QG C C   Y G DCS+++CP   AWAD    TD+AHN AVCSNMG C+  TGLC C  GFTG AC+RMSC  +CN+ G CLSM + A  +D    I       WDA
Sbjct:   22 CPNDCSGHGQCLFQGVCQCSRSYYGADCSYIKCPMGNAWADYTLATDNAHNLAVCSNMGTCDATTGLCTCIPGFTGAACDRMSC--NCNSRGTCLSMNQYALTKDPGLGIINPYTTNWDA 139          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: A0A5D6XKJ3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKJ3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.540e-31
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGS---CDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSM 292
            C N CSG G C  +G+   C C+ G+ G DCS   CP+ PAW+D+A  TD AH  AVCSN G C+  +G C C  GFTGRACERM+CPN+C+ HG C SM
Sbjct:   28 CPNACSGRGVCTSRGNGCICACFKGFIGDDCSLRTCPTGPAWSDVAVATDRAHQPAVCSNRGTCDASSGRCSCDAGFTGRACERMACPNECSKHGDCRSM 127          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: A0A1V9YUC9_9STRA (Tenascin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUC9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.950e-31
Identity = 63/120 (52.50%), Postives = 75/120 (62.50%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGSCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSMAEAAAAEDGNRLIHVASYEAWDA 361
            C N CSG+G+C  QG C C   Y G DCS+++CP   AWAD    TD+AHN AVCSNMG C+  TGLC C  GFTG AC+RMSC  +CN+ G CLSM + A  +D    I       WDA
Sbjct:  336 CPNDCSGHGQCLFQGVCQCSRSYYGADCSYIKCPMGNAWADYTLATDNAHNLAVCSNMGTCDATTGLCTCIPGFTGAACDRMSC--NCNSRGTCLSMNQYALTKDPGLGIINPYTTNWDA 453          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: A0A6A3M2Y4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3M2Y4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.620e-30
Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGS---CDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSMAEAAAAEDGNRLIHVASYEAWD 358
            C N CS +G C  +G+   C C++G+ G DCS   CP+ PAW D+A  TD AH    CSN G C+  TG+C C  GF+G AC RMSCPNDC  HG+C SM   A  +D      V     WD
Sbjct:   21 CPNTCSDHGTCTTKGNGYLCSCYNGFTGGDCSRRTCPTGPAWNDLAIATDRAHQPVACSNRGTCDYTTGVCTCDVGFSGLACNRMSCPNDCGKHGECRSMKLNAQRKDKGLPPSVVYDSVWD 142          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: F0WWC6_9STRA (Mastigoneme putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWC6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.010e-30
Identity = 56/121 (46.28%), Postives = 70/121 (57.85%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGSCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSMAEAAAAEDGNRLIHVAS--YEAWD 358
            C N+CSG+G C     CDC   + G DCS   CP   AW D A GT+DAH  A C+N G CN + GLCVC +GFTG+ C R+ CP+DCN HG C  + + A+     R+  V    Y  WD
Sbjct:   48 CPNKCSGHGRCKANDVCDCMQNWGGGDCSLRVCPYTRAWHDTAIGTNDAHYYAECANRGICNRDKGLCVCDDGFTGKGCRRLGCPDDCNGHGTCEYIEDLASDSFDKRVNGVPGQKYTLWD 168          
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Match: F0YK13_AURAN (EGF-like domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK13_AURAN)

HSP 1 Score: 115 bits (289), Expect = 3.590e-30
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    2 CYNQCSGNGECNPQGSCDCWDGYD-GWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCVCHEGFTGRACERMSCPNDCNAHGQCLSM 292
            C N CSG+G+C  +  C C+DG+D   DCS   C    AWAD A   D AH+ A CSN G CN +TG C C +G+TG AC+R +CPNDCNA+G CL++
Sbjct:   13 CPNMCSGHGDCGAENVCSCFDGFDYAPDCSLRTCSKGIAWADKAYAVDLAHSMAECSNAGLCNRDTGKCECFDGYTGLACQRSACPNDCNANGMCLTL 110          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1425.3109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUB0_ECTSI4.290e-8596.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3JZB7_9STRA6.380e-3753.08Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S1UCW7_9STRA1.460e-3258.16Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A482S5I4_9ARCH3.080e-3250.41Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A0A7CMC0_9STRA3.390e-3152.50Secreted protein n=1 Tax=Thraustotheca clavata Tax... [more]
A0A5D6XKJ3_9STRA3.540e-3155.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9YUC9_9STRA3.950e-3152.50Tenascin n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
A0A6A3M2Y4_9STRA1.620e-3046.72Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
F0WWC6_9STRA2.010e-3046.28Mastigoneme putative n=1 Tax=Albugo laibachii Nc14... [more]
F0YK13_AURAN3.590e-3052.04EGF-like domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1425contigE-fasciculatus_F_contig1425:6362..6979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size364
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927917.330597-CDS-E-fasciculatus_F_contig1425:6361..65351622927917.330597-CDS-E-fasciculatus_F_contig1425:6361..6535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1425 6362..6535 -
1695995749.9266908-CDS-E-fasciculatus_F_contig1425:6361..65351695995749.9266908-CDS-E-fasciculatus_F_contig1425:6361..6535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1425 6362..6535 -
1622927917.350035-CDS-E-fasciculatus_F_contig1425:6790..69791622927917.350035-CDS-E-fasciculatus_F_contig1425:6790..6979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1425 6791..6979 -
1695995749.935023-CDS-E-fasciculatus_F_contig1425:6790..69791695995749.935023-CDS-E-fasciculatus_F_contig1425:6790..6979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1425 6791..6979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1425.3109.1prot_E-fasciculatus_F_contig1425.3109.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1425 6362..6979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1425.3109.1

>prot_E-fasciculatus_F_contig1425.3109.1 ID=prot_E-fasciculatus_F_contig1425.3109.1|Name=mRNA_E-fasciculatus_F_contig1425.3109.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
MLQPVLRKRRVQPAGFLRLLGRLRRVGLFVLEVSVSPSLGGYSFWNRRRP
QRRRVLQYGILQRGDRALRLPRRLHRTSVRANVLPKRLQRSRAVPLHGRG
CRGGRRKQAYPRRVLRGLGRR
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mRNA from alignment at E-fasciculatus_F_contig1425:6362..6979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1425.3109.1 ID=mRNA_E-fasciculatus_F_contig1425.3109.1|Name=mRNA_E-fasciculatus_F_contig1425.3109.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1425:6362..6979- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTACAACCAGTGCTCCGGAAACGGAGAGTGCAACCCGCAGGGTTCTT GCGACTGTTGGGACGGTTACGACGGGTGGGATTGTTCGTTCTTGAGGTGT CCGTCAGCCCCAGCCTGGGCGGATATAGCTTCTGGAACAGACGACGCCCA CAACGACGCCGTGTGCTCCAATATGGGATACTGCAACGGGTGAGACAAAT CTCGATTCATGCATGGATGGCGGGGAGGGATACGGGTACAGGTGCATGCT GGTAAACAACTGAAGCACCAATACGCAACAAAGAAGACCTGACTCTCTCC TTCATACGCAACGTATCGGATGGTCGAAACCACACTTACCAAACCTTCGA CCCACATGTTTGCATCTTCTGCTGAATTTTGAGCAAACGTTGTTGTTGTC TTACAACAAGCTCGCGGACTCTCTTTAAAATAATTCCTGCGCAGGGAGAC CGGGCTCTGCGTCTGCCACGAAGGCTTCACAGGACGAGCGTGCGAGCGAA TGTCTTGCCCAAACGACTGCAACGCTCACGGGCAGTGCCTCTCCATGGCC GAGGCTGCCGCGGCGGAAGACGGAAACAGGCTTATCCACGTCGCGTCTTA CGAGGCTTGGGACGCCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1425:6362..6979-

>mRNA_E-fasciculatus_F_contig1425.3109.1 ID=mRNA_E-fasciculatus_F_contig1425.3109.1|Name=mRNA_E-fasciculatus_F_contig1425.3109.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1425:6362..6979- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTACAACCAGTGCTCCGGAAACGGAGAGTGCAACCCGCAGGGTTCTT
GCGACTGTTGGGACGGTTACGACGGGTGGGATTGTTCGTTCTTGAGGTGT
CCGTCAGCCCCAGCCTGGGCGGATATAGCTTCTGGAACAGACGACGCCCA
CAACGACGCCGTGTGCTCCAATATGGGATACTGCAACGGATGCTACAACC
AGTGCTCCGGAAACGGAGAGTGCAACCCGCAGGGTTCTTGCGACTGTTGG
GACGGTTACGACGGGTGGGATTGTTCGTTCTTGAGGTGTCCGTCAGCCCC
AGCCTGGGCGGATATAGCTTCTGGAACAGACGACGCCCACAACGACGCCG
TGTGCTCCAATATGGGATACTGCAACGGGGAGACCGGGCTCTGCGTCTGC
CACGAAGGCTTCACAGGACGAGCGTGCGAGCGAATGTCTTGCCCAAACGA
CTGCAACGCTCACGGGCAGTGCCTCTCCATGGCCGAGGCTGCCGCGGCGG
AAGACGGAAACAGGCTTATCCACGTCGCGTCTTACGAGGCTTGGGACGCC
GAGGAGACCGGGCTCTGCGTCTGCCACGAAGGCTTCACAGGACGAGCGTG
CGAGCGAATGTCTTGCCCAAACGACTGCAACGCTCACGGGCAGTGCCTCT
CCATGGCCGAGGCTGCCGCGGCGGAAGACGGAAACAGGCTTATCCACGTC
GCGTCTTACGAGGCTTGGGACGCCGA
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