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Homology
BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Match: D7FJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE2_ECTSI) HSP 1 Score: 236 bits (602), Expect = 2.710e-69 Identity = 131/150 (87.33%), Postives = 138/150 (92.00%), Query Frame = 1 Query: 1 MSASAAALLKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADLAAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKDMSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ 450
MSASAAALL AG ER AGAR+G +N+FSRARPRTSTGCESRA N+IG DL AKKR DR GRKEKASLKKEV+TLARQLRSGVREEFFGPLSQSARERAKDMSAAT RHTTRDPMILAKPLS ITGSVLTNVPLPAR+ TVGGEM+PSYNQ
Sbjct: 1131 MSASAAALLTAGEERVAGARNGGENDFSRARPRTSTGCESRARNRIGVDLVAKKRCDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPARVATVGGEMEPSYNQ 1280
BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Match: A0A6H5L653_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L653_9PHAE) HSP 1 Score: 219 bits (558), Expect = 2.290e-63 Identity = 119/142 (83.80%), Postives = 129/142 (90.85%), Query Frame = 1 Query: 25 LKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADLAAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKDMSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ 450
L AGG+R AGAR+G +++FSRARPRTS GCE+RA NKIGADL AK+RGDR GRKEKASLKKEV+TLARQLRSGVREEFFGPLSQSARERAKDMSAAT RHTTRDPMILAKPLS ITGSVLTNVPLPA+M TV EM+PSY Q
Sbjct: 1061 LTAGGQRVAGARNGGEHDFSRARPRTSAGCENRARNKIGADLVAKERGDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPAKMATVVREMEPSYTQ 1202
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 452 |
| Cds size | 450 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10011.31.1 >prot_E-fasciculatus_F_contig10011.31.1 ID=prot_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp
MSASAAALLKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADL
AAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKD
MSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ back to topmRNA from alignment at E-fasciculatus_F_contig10011:697..1323+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10011.31.1 ID=mRNA_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=627bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10011:697..1323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAGCATCGGCGGCCGCATTGCTGAAGGCTGGGGGGGAGAGGGCCGC
AGGGGCGAGAAGTGGTGCACAAAACAATTTCTCCCGCGCACGACCCCGAA
CATCGACTGGATGCGAAAGTCGGGCGACAAACAAGATAGGCGCGGATCTG
GCGGCCAAGAAACGGGGTGACAGGACGGGCAGAAAAGAGGTGCGTTTTCG
TCCAAAGGTACAGTCTCAAATTTGCCCTTCCTTGCCCATTGTTTCAAGGA
AAAAATTTGCCGGAAAGCTTCCCTGCCCAAGCCTATAATCTGCCGGCTCC
ATACTCAAAGGCTAAGGCTGACGTGACCCTCTCGTTGTCAACCGGCTCCT
CGTGTTTTCGCCACAGAAAGCCTCCCTGAAAAAAGAAGTGGACACTCTCG
CTCGACAACTGCGTTCCGGGGTCCGCGAAGAATTTTTCGGTCCCCTTTCC
CAGAGCGCGCGGGAAAGGGCCAAGGACATGAGCGCCGCCACAACACGCCA
CACAACTCGAGACCCCATGATCTTGGCGAAGCCCCTTTCTACCATCACGG
GGTCTGTCCTGACCAACGTTCCTCTCCCAGCCAGGATGATGACGGTCGGT
GGCGAGATGAAACCCTCTTACAATCAA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10011:697..1323+ >mRNA_E-fasciculatus_F_contig10011.31.1 ID=mRNA_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10011:697..1323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAGCATCGGCGGCCGCATTGCTGAAGGCTGGGGGGGAGAGGGCCGC
AGGGGCGAGAAGTGGTGCACAAAACAATTTCTCCCGCGCACGACCCCGAA
CATCGACTGGATGCGAAAGTCGGGCGACAAACAAGATAGGCGCGGATCTG
GCGGCCAAGAAACGGGGTGACAGGACGGGCAGAAAAGAGATGTCAGCATC
GGCGGCCGCATTGCTGAAGGCTGGGGGGGAGAGGGCCGCAGGGGCGAGAA
GTGGTGCACAAAACAATTTCTCCCGCGCACGACCCCGAACATCGACTGGA
TGCGAAAGTCGGGCGACAAACAAGATAGGCGCGGATCTGGCGGCCAAGAA
ACGGGGTGACAGGACGGGCAGAAAAGAGAAAGCCTCCCTGAAAAAAGAAG
TGGACACTCTCGCTCGACAACTGCGTTCCGGGGTCCGCGAAGAATTTTTC
GGTCCCCTTTCCCAGAGCGCGCGGGAAAGGGCCAAGGACATGAGCGCCGC
CACAACACGCCACACAACTCGAGACCCCATGATCTTGGCGAAGCCCCTTT
CTACCATCACGGGGTCTGTCCTGACCAACGTTCCTCTCCCAGCCAGGATG
ATGACGGTCGGTGGCGAGATGAAACCCTCTTACAATCAAAAAGCCTCCCT
GAAAAAAGAAGTGGACACTCTCGCTCGACAACTGCGTTCCGGGGTCCGCG
AAGAATTTTTCGGTCCCCTTTCCCAGAGCGCGCGGGAAAGGGCCAAGGAC
ATGAGCGCCGCCACAACACGCCACACAACTCGAGACCCCATGATCTTGGC
GAAGCCCCTTTCTACCATCACGGGGTCTGTCCTGACCAACGTTCCTCTCC
CAGCCAGGATGATGACGGTCGGTGGCGAGATGAAACCCTCTTACAATCAA back to top
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