mRNA_E-fasciculatus_F_contig10011.31.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10011.31.1
Unique NamemRNA_E-fasciculatus_F_contig10011.31.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Match: D7FJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE2_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 2.710e-69
Identity = 131/150 (87.33%), Postives = 138/150 (92.00%), Query Frame = 1 
Query:    1 MSASAAALLKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADLAAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKDMSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ 450
            MSASAAALL AG ER AGAR+G +N+FSRARPRTSTGCESRA N+IG DL AKKR DR GRKEKASLKKEV+TLARQLRSGVREEFFGPLSQSARERAKDMSAAT RHTTRDPMILAKPLS ITGSVLTNVPLPAR+ TVGGEM+PSYNQ
Sbjct: 1131 MSASAAALLTAGEERVAGARNGGENDFSRARPRTSTGCESRARNRIGVDLVAKKRCDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPARVATVGGEMEPSYNQ 1280
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BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Match: A0A6H5L653_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L653_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.290e-63
Identity = 119/142 (83.80%), Postives = 129/142 (90.85%), Query Frame = 1 
Query:   25 LKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADLAAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKDMSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ 450
            L AGG+R AGAR+G +++FSRARPRTS GCE+RA NKIGADL AK+RGDR GRKEKASLKKEV+TLARQLRSGVREEFFGPLSQSARERAKDMSAAT RHTTRDPMILAKPLS ITGSVLTNVPLPA+M TV  EM+PSY Q
Sbjct: 1061 LTAGGQRVAGARNGGEHDFSRARPRTSAGCENRARNKIGADLVAKERGDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPAKMATVVREMEPSYTQ 1202
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJE2_ECTSI2.710e-6987.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L653_9PHAE2.290e-6383.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10011contigE-fasciculatus_F_contig10011:697..1323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.6836314-CDS-E-fasciculatus_F_contig10011:696..8851622927503.6836314-CDS-E-fasciculatus_F_contig10011:696..885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10011 697..885 +
1695995566.6401045-CDS-E-fasciculatus_F_contig10011:696..8851695995566.6401045-CDS-E-fasciculatus_F_contig10011:696..885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10011 697..885 +
1622927503.6943269-CDS-E-fasciculatus_F_contig10011:1062..13231622927503.6943269-CDS-E-fasciculatus_F_contig10011:1062..1323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10011 1063..1323 +
1695995566.6567428-CDS-E-fasciculatus_F_contig10011:1062..13231695995566.6567428-CDS-E-fasciculatus_F_contig10011:1062..1323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10011 1063..1323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10011.31.1prot_E-fasciculatus_F_contig10011.31.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10011 697..1323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10011.31.1

>prot_E-fasciculatus_F_contig10011.31.1 ID=prot_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp
MSASAAALLKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADL
AAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKD
MSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ
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mRNA from alignment at E-fasciculatus_F_contig10011:697..1323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10011.31.1 ID=mRNA_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=627bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10011:697..1323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAGCATCGGCGGCCGCATTGCTGAAGGCTGGGGGGGAGAGGGCCGC
AGGGGCGAGAAGTGGTGCACAAAACAATTTCTCCCGCGCACGACCCCGAA
CATCGACTGGATGCGAAAGTCGGGCGACAAACAAGATAGGCGCGGATCTG
GCGGCCAAGAAACGGGGTGACAGGACGGGCAGAAAAGAGGTGCGTTTTCG
TCCAAAGGTACAGTCTCAAATTTGCCCTTCCTTGCCCATTGTTTCAAGGA
AAAAATTTGCCGGAAAGCTTCCCTGCCCAAGCCTATAATCTGCCGGCTCC
ATACTCAAAGGCTAAGGCTGACGTGACCCTCTCGTTGTCAACCGGCTCCT
CGTGTTTTCGCCACAGAAAGCCTCCCTGAAAAAAGAAGTGGACACTCTCG
CTCGACAACTGCGTTCCGGGGTCCGCGAAGAATTTTTCGGTCCCCTTTCC
CAGAGCGCGCGGGAAAGGGCCAAGGACATGAGCGCCGCCACAACACGCCA
CACAACTCGAGACCCCATGATCTTGGCGAAGCCCCTTTCTACCATCACGG
GGTCTGTCCTGACCAACGTTCCTCTCCCAGCCAGGATGATGACGGTCGGT
GGCGAGATGAAACCCTCTTACAATCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10011:697..1323+

>mRNA_E-fasciculatus_F_contig10011.31.1 ID=mRNA_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10011:697..1323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAGCATCGGCGGCCGCATTGCTGAAGGCTGGGGGGGAGAGGGCCGC
AGGGGCGAGAAGTGGTGCACAAAACAATTTCTCCCGCGCACGACCCCGAA
CATCGACTGGATGCGAAAGTCGGGCGACAAACAAGATAGGCGCGGATCTG
GCGGCCAAGAAACGGGGTGACAGGACGGGCAGAAAAGAGATGTCAGCATC
GGCGGCCGCATTGCTGAAGGCTGGGGGGGAGAGGGCCGCAGGGGCGAGAA
GTGGTGCACAAAACAATTTCTCCCGCGCACGACCCCGAACATCGACTGGA
TGCGAAAGTCGGGCGACAAACAAGATAGGCGCGGATCTGGCGGCCAAGAA
ACGGGGTGACAGGACGGGCAGAAAAGAGAAAGCCTCCCTGAAAAAAGAAG
TGGACACTCTCGCTCGACAACTGCGTTCCGGGGTCCGCGAAGAATTTTTC
GGTCCCCTTTCCCAGAGCGCGCGGGAAAGGGCCAAGGACATGAGCGCCGC
CACAACACGCCACACAACTCGAGACCCCATGATCTTGGCGAAGCCCCTTT
CTACCATCACGGGGTCTGTCCTGACCAACGTTCCTCTCCCAGCCAGGATG
ATGACGGTCGGTGGCGAGATGAAACCCTCTTACAATCAAAAAGCCTCCCT
GAAAAAAGAAGTGGACACTCTCGCTCGACAACTGCGTTCCGGGGTCCGCG
AAGAATTTTTCGGTCCCCTTTCCCAGAGCGCGCGGGAAAGGGCCAAGGAC
ATGAGCGCCGCCACAACACGCCACACAACTCGAGACCCCATGATCTTGGC
GAAGCCCCTTTCTACCATCACGGGGTCTGTCCTGACCAACGTTCCTCTCC
CAGCCAGGATGATGACGGTCGGTGGCGAGATGAAACCCTCTTACAATCAA
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