mRNA_E-fasciculatus_F_contig14239.3101.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14239.3101.1
Unique NamemRNA_E-fasciculatus_F_contig14239.3101.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14239.3101.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 7.540e-83
Identity = 218/306 (71.24%), Postives = 235/306 (76.80%), Query Frame = 1 
Query:   19 LEARVKIRVDAVRTDLSVPFVENVARHVLAGPLVTQLLLPQPQGDSGSAGAAPRAPSDGAAPSAAASPSPS--------VVGGAQTAADEGVGQDFSDSNGAXXXXXXXXXXXXXXXXXXXXGVPAGSVGTGWGDGPRQGGGGAEDDNSWENVVYVKVGLEVCDCELGVPLDGGVGADGRSGGQHGIVADGSGSRVAAKLGLLLADATWTAPA----ASSAAXXXXXXXXXPGGSLSVETLVSSAAVKLEPEGFDLLEAVHTRVVGRLPLGATGAADPAAPXXXXXXXXXXXXXXXXXXDLAEKLR 900
            LEARVKIR+DAVRTDLSVPFVEN+ARHVL GP+++QLLLPQPQGDS +                               V GGAQ  ADEG+ +DFSDSNG XXXXXXXXXXXXXXX     G PAGSVGTGW DGPRQGG   EDDNSWEN+V++KVGLEVCDCELGVPLDGG+ ADG SGG  GI+AD +GSRVAAKLGLLL D TW APA    A++ A XXXXXXX PGGSLSVETLVSSAAV LEPEGFDLLEAVH RV+GR  LGATGAADP   XXXXXXXXXXXXXXXXXX LAEKLR
Sbjct:  931 LEARVKIRLDAVRTDLSVPFVENIARHVLTGPMMSQLLLPQPQGDSCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGGAQATADEGLRRDFSDSNGTXXXXXXXXXXXXXXXT----GAPAGSVGTGWRDGPRQGGV-TEDDNSWENLVFIKVGLEVCDCELGVPLDGGICADGGSGGLDGIIADRAGSRVAAKLGLLLTDVTWMAPAVRPAATTEAGXXXXXXXGPGGSLSVETLVSSAAVMLEPEGFDLLEAVHARVLGRFLLGATGAADPXXXXXXXXXXXXXXXXXXXXXXLAEKLR 1231
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BLAST of mRNA_E-fasciculatus_F_contig14239.3101.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 3.030e-45
Identity = 94/122 (77.05%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:  460 VKVGLEVCDCELGVPLDGGVGADGRSGGQHGIVADGSGSRVAAKLGLLLADATWTAPAASSAAXXXXXXXXXPGGSLSVETLVSSAAVKLEPEGFDLLEAVHTRVVGRLPLGATGAADPAAP 825
            V VGLEVCDCELGVPLDGG+GADG SGG  GI+A  +GSRVAAKLGLLL D TWTAPA   AA         PGGSLSVETLVSSA VKLEPEGF+LLEAVH RV+GR PLGATGAADPAAP
Sbjct: 2086 VNVGLEVCDCELGVPLDGGIGADGGSGGLDGIIAGRAGSRVAAKLGLLLTDVTWTAPAVRPAAITEASGGGGPGGSLSVETLVSSAVVKLEPEGFNLLEAVHARVLGRFPLGATGAADPAAP 2207
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14239.3101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKL9_9PHAE7.540e-8371.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP20_ECTSI3.030e-4577.05Vacuolar protein sorting-associated protein, putat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14239contigE-fasciculatus_F_contig14239:775..1953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue2.3e-42
Seed eggNOG ortholog2880.D8LP20
KEGG koko:K19525
GOsGO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size903
Cds size900
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.5812483-CDS-E-fasciculatus_F_contig14239:775..12101622927914.5812483-CDS-E-fasciculatus_F_contig14239:775..1210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 776..1210 -
1695995749.5987043-CDS-E-fasciculatus_F_contig14239:775..12101695995749.5987043-CDS-E-fasciculatus_F_contig14239:775..1210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 776..1210 -
1622927914.591727-CDS-E-fasciculatus_F_contig14239:1488..19531622927914.591727-CDS-E-fasciculatus_F_contig14239:1488..1953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 1489..1953 -
1695995749.6097717-CDS-E-fasciculatus_F_contig14239:1488..19531695995749.6097717-CDS-E-fasciculatus_F_contig14239:1488..1953Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 1489..1953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14239.3101.1prot_E-fasciculatus_F_contig14239.3101.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14239 776..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14239.3101.1

>prot_E-fasciculatus_F_contig14239.3101.1 ID=prot_E-fasciculatus_F_contig14239.3101.1|Name=mRNA_E-fasciculatus_F_contig14239.3101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=300bp
GGGGGGLEARVKIRVDAVRTDLSVPFVENVARHVLAGPLVTQLLLPQPQG
DSGSAGAAPRAPSDGAAPSAAASPSPSVVGGAQTAADEGVGQDFSDSNGA
AAAAATTGATGAATTTTTTTGVPAGSVGTGWGDGPRQGGGGAEDDNSWEN
VVYVKVGLEVCDCELGVPLDGGVGADGRSGGQHGIVADGSGSRVAAKLGL
LLADATWTAPAASSAAITEAGGGGGPGGSLSVETLVSSAAVKLEPEGFDL
LEAVHTRVVGRLPLGATGAADPAAPPTGGGDGGGHAAPPRDDDDLAEKLR
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mRNA from alignment at E-fasciculatus_F_contig14239:775..1953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14239.3101.1 ID=mRNA_E-fasciculatus_F_contig14239.3101.1|Name=mRNA_E-fasciculatus_F_contig14239.3101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1179bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14239:775..1953- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGCGGAGGCGGTGGGCTGGAGGCTCGCGTCAAGATCAGGGTCGATGC
GGTCAGGACGGACCTGTCCGTTCCGTTTGTCGAGAACGTCGCGAGACACG
TTCTCGCGGGGCCCCTGGTGACGCAGCTGCTGCTGCCGCAACCGCAGGGT
GATAGTGGCAGCGCCGGTGCTGCCCCGCGAGCCCCGAGCGACGGGGCCGC
CCCAAGCGCCGCCGCGTCGCCGTCGCCGTCGGTAGTCGGCGGAGCGCAAA
CCGCCGCTGATGAGGGAGTGGGGCAAGATTTCTCTGACTCGAATGGCGCT
GCTGCTGCTGCTGCTACTACCGGTGCTACCGGTGCTGCGACGACGACGAC
GACGACGACGGGTGTGCCGGCCGGAAGCGTCGGAACAGGCTGGGGCGACG
GTCCTCGGCAGGGCGGCGGCGGTGCGGAAGATGACAACTCATGGGAAAAT
GTGGTTTACGTCAAGGTACGTGCTTGGGCAGGGGAGGGACAGCCGGGCCG
GTAAATAAAGTTGGGTTCAGTTGCTGTTGCGTGGAGGCTTTAACAGTGGC
AACGCTTCTCCACCCAACGATTTATCTCTGCAGCGATATATCTCTGAAGC
GCCTTCCCCCCCCCACTACTTGACATTCAAGACACAAATTAGTTTTTCGC
CCGATTTTTTCTTCTCAGCGGCTGTGGCAGCGTGTCCTTTGTCTTTACAC
CTCGGAACGCCTACATACTACAACGATGTTTCAACGATTGCAGGTTGGGT
TGGAGGTGTGCGACTGCGAGCTAGGCGTCCCACTCGACGGTGGTGTCGGC
GCCGACGGCCGCAGCGGCGGCCAACATGGCATAGTTGCGGATGGGTCGGG
TAGTCGGGTTGCCGCTAAACTCGGCCTCCTTTTGGCAGACGCGACGTGGA
CGGCACCCGCGGCCAGTTCTGCCGCCATCACCGAAGCAGGCGGCGGCGGC
GGCCCGGGGGGGAGCCTCTCCGTGGAAACGTTGGTGTCTTCCGCCGCGGT
CAAGCTGGAACCGGAAGGGTTTGACTTGTTGGAGGCCGTGCACACTCGTG
TGGTGGGCAGGTTGCCGCTGGGGGCGACAGGAGCAGCAGACCCTGCTGCG
CCACCAACCGGCGGCGGGGACGGTGGTGGCCACGCCGCCCCCCCTCGGGA
CGACGACGATCTCGCGGAGAAACTACGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14239:775..1953-

>mRNA_E-fasciculatus_F_contig14239.3101.1 ID=mRNA_E-fasciculatus_F_contig14239.3101.1|Name=mRNA_E-fasciculatus_F_contig14239.3101.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1800bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14239:775..1953- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGCGGAGGCGGTGGGCTGGAGGCTCGCGTCAAGATCAGGGTCGATGC
GGTCAGGACGGACCTGTCCGTTCCGTTTGTCGAGAACGTCGCGAGACACG
TTCTCGCGGGGCCCCTGGTGACGCAGCTGCTGCTGCCGCAACCGCAGGGT
GATAGTGGCAGCGCCGGTGCTGCCCCGCGAGCCCCGAGCGACGGGGCCGC
CCCAAGCGCCGCCGCGTCGCCGTCGCCGTCGGTAGTCGGCGGAGCGCAAA
CCGCCGCTGATGAGGGAGTGGGGCAAGATTTCTCTGACTCGAATGGCGCT
GCTGCTGCTGCTGCTACTACCGGTGCTACCGGTGCTGCGACGACGACGAC
GACGACGACGGGTGTGCCGGCCGGAAGCGTCGGAACAGGCTGGGGCGACG
GTCCTCGGCAGGGCGGCGGCGGTGCGGAAGATGACAACTCATGGGAAAAT
GTGGTTTACGTCAAGGGCGGCGGAGGCGGTGGGCTGGAGGCTCGCGTCAA
GATCAGGGTCGATGCGGTCAGGACGGACCTGTCCGTTCCGTTTGTCGAGA
ACGTCGCGAGACACGTTCTCGCGGGGCCCCTGGTGACGCAGCTGCTGCTG
CCGCAACCGCAGGGTGATAGTGGCAGCGCCGGTGCTGCCCCGCGAGCCCC
GAGCGACGGGGCCGCCCCAAGCGCCGCCGCGTCGCCGTCGCCGTCGGTAG
TCGGCGGAGCGCAAACCGCCGCTGATGAGGGAGTGGGGCAAGATTTCTCT
GACTCGAATGGCGCTGCTGCTGCTGCTGCTACTACCGGTGCTACCGGTGC
TGCGACGACGACGACGACGACGACGGGTGTGCCGGCCGGAAGCGTCGGAA
CAGGCTGGGGCGACGGTCCTCGGCAGGGCGGCGGCGGTGCGGAAGATGAC
AACTCATGGGAAAATGTGGTTTACGTCAAGGTTGGGTTGGAGGTGTGCGA
CTGCGAGCTAGGCGTCCCACTCGACGGTGGTGTCGGCGCCGACGGCCGCA
GCGGCGGCCAACATGGCATAGTTGCGGATGGGTCGGGTAGTCGGGTTGCC
GCTAAACTCGGCCTCCTTTTGGCAGACGCGACGTGGACGGCACCCGCGGC
CAGTTCTGCCGCCATCACCGAAGCAGGCGGCGGCGGCGGCCCGGGGGGGA
GCCTCTCCGTGGAAACGTTGGTGTCTTCCGCCGCGGTCAAGCTGGAACCG
GAAGGGTTTGACTTGTTGGAGGCCGTGCACACTCGTGTGGTGGGCAGGTT
GCCGCTGGGGGCGACAGGAGCAGCAGACCCTGCTGCGCCACCAACCGGCG
GCGGGGACGGTGGTGGCCACGCCGCCCCCCCTCGGGACGACGACGATCTC
GCGGAGAAACTACGGGTTGGGTTGGAGGTGTGCGACTGCGAGCTAGGCGT
CCCACTCGACGGTGGTGTCGGCGCCGACGGCCGCAGCGGCGGCCAACATG
GCATAGTTGCGGATGGGTCGGGTAGTCGGGTTGCCGCTAAACTCGGCCTC
CTTTTGGCAGACGCGACGTGGACGGCACCCGCGGCCAGTTCTGCCGCCAT
CACCGAAGCAGGCGGCGGCGGCGGCCCGGGGGGGAGCCTCTCCGTGGAAA
CGTTGGTGTCTTCCGCCGCGGTCAAGCTGGAACCGGAAGGGTTTGACTTG
TTGGAGGCCGTGCACACTCGTGTGGTGGGCAGGTTGCCGCTGGGGGCGAC
AGGAGCAGCAGACCCTGCTGCGCCACCAACCGGCGGCGGGGACGGTGGTG
GCCACGCCGCCCCCCCTCGGGACGACGACGATCTCGCGGAGAAACTACGG
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