mRNA_E-fasciculatus_F_contig14216.3082.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14216.3082.1
Unique NamemRNA_E-fasciculatus_F_contig14216.3082.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A6H5JW07_9PHAE (UTP15_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW07_9PHAE)

HSP 1 Score: 482 bits (1240), Expect = 1.830e-167
Identity = 238/252 (94.44%), Postives = 239/252 (94.84%), Query Frame = 1
Query:    4 VQTHNAPVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTVIDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            VQTHNAPVSC+HFSATAPHDFAVTCSTHVSLHAA TGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTVIDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISG          TRQ K NVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV
Sbjct:   35 VQTHNAPVSCIHFSATAPHDFAVTCSTHVSLHAAVTGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTVIDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGSYDHTVKMWDTRQPKRNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 286          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A835Z7W5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7W5_9STRA)

HSP 1 Score: 254 bits (648), Expect = 3.100e-78
Identity = 131/254 (51.57%), Postives = 174/254 (68.50%), Query Frame = 1
Query:    4 VQTHNAPVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTVI--DVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            V+TH+A  + +H+S  AP+D AV+C +HVS+ + ATG ++R++ RF  VAYS   R DG+L+  GD  G+VI  D  +K +LR F  H A  R VRWS DGL+LAS SDDK++RLWDLPT   V +R+GH DYVRA+ AS +S D W++G           R A G V  + HGAPVEA L LPGG L  SAGGN +K  +WD +GGG  +L+H  ++HQKT+TCLAL+G+ +RLLTGGLD  VKI +L  ++V
Sbjct:   35 VETHDAHCTSLHYSPAAPYDLAVSCGSHVSIRSGATGAKLRAISRFQGVAYSGVFRGDGRLIAGGDAKGSVIVADATSKAMLRTFAGHAAAVRAVRWSADGLRLASASDDKSVRLWDLPTGAHVGMREGHTDYVRAMDASAASADAWVTGGYDGTVRLWDARAA-GAVRVMEHGAPVEAVLCLPGGSLVASAGGNVLK--IWDAMGGG--KLVHECSHHQKTITCLALNGSRTRLLTGGLDGLVKICSLSTYQV 283          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A1X2II15_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2II15_9FUNG)

HSP 1 Score: 228 bits (582), Expect = 5.650e-68
Identity = 121/249 (48.59%), Postives = 164/249 (65.86%), Query Frame = 1
Query:   19 APVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            A +  ++FS  APHDFA+  ST V ++++ T +  +++ RF  +AYSA  R DGKL+  GD TG V   DV ++ ILR FREH  P  V ++S +   + S SDDKT+R+WD+PT T+V V +GH DYVR+   S  +P+  ++G           RQ +  V+ + HGAPVE+ L  PGGG  VSAGG  +K  VWDLL GG  R LHTL+NHQKTVT LA + T +R+LTG LD+HVKIYN+E++KV
Sbjct:   38 ASIPSIYFSPVAPHDFALASSTRVQIYSSKTHQPKKTISRFKDLAYSACFRHDGKLLVAGDATGLVQLFDVNSRAILRTFREHSMPVHVTKFSNNKTNIMSASDDKTVRIWDIPTETSVNVFEGHDDYVRSGVVSDDNPNLVLTGAYDQTVKLWDMRQNE-CVMTIQHGAPVESLLMYPGGGAIVSAGGPTLK--VWDLLSGG--RCLHTLSNHQKTVTSLAFNNTATRILTGSLDQHVKIYNVEDYKV 281          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A1X2H797_SYNRA (WD40-repeat-containing domain protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H797_SYNRA)

HSP 1 Score: 224 bits (571), Expect = 1.010e-66
Identity = 116/247 (46.96%), Postives = 159/247 (64.37%), Query Frame = 1
Query:   25 VSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            VS V+FS  AP+DFA+  ST V ++++ T +  +++ RF  +AYSA  R DGKL+  GD TG V   DV ++ ILR FREH  P RV ++S +  Q+ + SDD+T+RLWD+P   ++ V + H DYVRA   S  +P   ++G          TRQ  G V+ + H APVE+ L  PGGG  VSAGG  +K  VWDLL GG  R +H ++N QKTVT L  D T SRL+TG LD+HVK+YN++++KV
Sbjct:   40 VSSVYFSPVAPYDFAIASSTRVQIYSSKTHQPKKTISRFKDIAYSASFRQDGKLVVAGDETGLVQVFDVNSRAILRTFREHTLPVRVTKFSSENTQIMTASDDRTVRLWDIPAEKSIHVFEDHQDYVRAGVVSQDNPHMLVTGSYDQTIKIWDTRQ-NGCVMTMQHDAPVESVLMYPGGGAVVSAGGPGIK--VWDLLSGG--RCMHAVSNQQKTVTSLCFDSTASRLVTGSLDQHVKVYNVQDYKV 281          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A5D6XGD7_9STRA (UTP15_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGD7_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.950e-65
Identity = 121/252 (48.02%), Postives = 156/252 (61.90%), Query Frame = 1
Query:   22 PVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNV----LELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            PV+ +  S  APH  A+T ST + L++ AT    ++  RF  V YS   RSDG+L+  G     V  +D+ T+ ILR F+ H A  R  R+S D + + S SDDKT R WDLPT   V +   H DYVR+ AASPSS   W +G           R A  +V    + L+HGAPVEA L +PGGGL +SAGGN VK  VWD+L GG  RLLH  ++HQKT+T + LDGTGSRLLTG LD H+KIY+L+ ++V
Sbjct:   43 PVTHIDVSPVAPHAVAITTSTRIHLYSTATNEVTKTFSRFRDVVYSGTFRSDGRLLVAGGEAPVVQVLDIGTRAILRTFKGHTAAVRSTRFSSDNVHVLSCSDDKTARYWDLPTGKPVALLGAHKDYVRSSAASPSSQHIWATGSYDHTVKLWDLRAADQSVAASTMSLNHGAPVEATLIMPGGGLLMSAGGNVVK--VWDILSGG--RLLHAFSSHQKTITSIGLDGTGSRLLTGSLDGHLKIYDLKTYEV 290          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A484EDC8_BRELC (UTP15_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDC8_BRELC)

HSP 1 Score: 220 bits (561), Expect = 2.400e-65
Identity = 113/252 (44.84%), Postives = 160/252 (63.49%), Query Frame = 1
Query:   22 PVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTG--TVIDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNV----LELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            PV+ +  S   PH  A+T ST + L++  T   I++  RF  V YS   RSDGKL+  G       V+D+KT+ ILR+F+ H A TR  R+S D + + S SDDKT R WDLPT   + +   H+DYVR+  A+PSS + W +G           R +   V    + L+HGAPVEAC+ +PGG L +SAGGN +K  VWD+L GG  R+LH+ ++HQKT+TCL LDG+G+RL++G LD H+KIY+L+ +++
Sbjct:   43 PVTHIDVSPVTPHHVAITSSTRIHLYSTTTNEIIKTFSRFRDVVYSGTFRSDGKLLVAGGEASHVQVLDIKTRAILRSFKGHTAATRSTRFSSDNVHVLSCSDDKTARYWDLPTGKPLALLGEHSDYVRSSGANPSSHNIWATGSYDHTVKLWDLRTSDQTVSKSSMSLNHGAPVEACMIMPGGSLLLSAGGNSIK--VWDILSGG--RILHSFSSHQKTITCLGLDGSGTRLMSGSLDGHLKIYDLKTYEL 290          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A8K1FPI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPI2_PYTOL)

HSP 1 Score: 220 bits (560), Expect = 3.960e-65
Identity = 118/252 (46.83%), Postives = 156/252 (61.90%), Query Frame = 1
Query:   22 PVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQA----KGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            PV+ +  S +APH+ A+T ST + L++  + + I+S  RF  V YS   RSDGKL+  G     V  +D+ T+ ILR F+ H A  R  R+S D   + S SDDKT R WDLPT   + +   H DYVR  AASPSS   W +G           R +      + + L HGAPVEAC  +PGGGL +SAGGN VK  VWDLL GG  R+LH+ ++HQKT+T + LDGTG+RLLTG LD H+KIY+L+ ++V
Sbjct:   43 PVTHIDVSPSAPHNIAITTSTRIHLYSTLSNQIIKSFSRFRDVVYSGTFRSDGKLIVAGGEAPQVQVLDINTRAILRTFKGHTAAIRSTRFSTDNTHVLSCSDDKTSRYWDLPTGKPLALLGEHTDYVRCSAASPSSQSIWATGSYDHTVKLWDLRASDQTMSSSTMSLDHGAPVEACFMMPGGGLLMSAGGNVVK--VWDLLSGG--RMLHSFSSHQKTITSIGLDGTGTRLLTGSLDGHLKIYDLKTYEV 290          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A1X2GWQ2_9FUNG (WD40 repeat-like protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GWQ2_9FUNG)

HSP 1 Score: 219 bits (559), Expect = 6.360e-65
Identity = 123/247 (49.80%), Postives = 168/247 (68.02%), Query Frame = 1
Query:   25 VSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            +  ++FS  APHDF VT ST V +++A T +  +++ RF  +AYS   R DGKL+  GD TG V   DV ++ ILR FREHK P  V +++ +   L S SDDKT+R+WD+PT ++V V +GH DY+R+   S  +P+  ++G  XXXXXXXX RQ    V+ + HGAPVE+ L  PGGG  VSAGG  VK  VWDLL GG  R L +L+NHQKTVT L+ +G+ SRL+TG LD  VK+YN+++++V
Sbjct:   40 IPSIYFSPVAPHDFVVTSSTRVQVYSAKTHQPKKTISRFKDLAYSGSFRHDGKLIVAGDATGLVQIFDVNSRAILRTFREHKMPVHVTKFAKNNQHLMSASDDKTVRIWDIPTESSVNVFEGHDDYIRSGVVSDDNPNLVLTGSYXXXXXXXXMRQDD-CVMTMQHGAPVESILMFPGGGAVVSAGGPHVK--VWDLLSGG--RCLQSLSNHQKTVTSLSFNGSASRLITGSLDHQVKVYNVQDYQV 281          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A507E144_9FUNG (UTP15_C domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E144_9FUNG)

HSP 1 Score: 218 bits (556), Expect = 9.180e-65
Identity = 124/249 (49.80%), Postives = 165/249 (66.27%), Query Frame = 1
Query:   19 APVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            A V+ +HFS  AP+DFAVT ST V +++ +T    +++ RF   AYS  +R DGKLM  GD TG V   D+ ++ ILR  + H  P  V ++S D +Q+ SGSDDKT+R+WD+ T   V +   H DY+RA   S  +P   +  XXXXXXXXXX R      + + HGAPVE+ L  PG GL  SAGGN+VK  +WD+LGGG  R L TLANHQKT+TC+  DGTGSR+LTG LD H+K+Y++ ++KV
Sbjct:   39 AAVTSIHFSPVAPYDFAVTSSTRVQIYSTSTHSVKKTISRFKDTAYSGYIRGDGKLMVAGDATGQVQLFDLGSRAILRTMKGHDGPVHVAKFSPDHMQVLSGSDDKTVRVWDVATEKEVAIFSEHEDYIRAGLVSQENPHLIVXXXXXXXXXXXXLRSTS-CAMTMRHGAPVESLLMFPGSGLVASAGGNQVK--LWDILGGG--RHLQTLANHQKTITCMTFDGTGSRILTGSLDHHLKVYSVRDYKV 282          
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Match: A0A1Y2GYS6_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GYS6_9FUNG)

HSP 1 Score: 218 bits (556), Expect = 2.670e-64
Identity = 126/249 (50.60%), Postives = 171/249 (68.67%), Query Frame = 1
Query:   19 APVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGXXXXXXXXXXTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLENFKV 759
            A VS VHFS T P+DFAVT ST V ++++ T +  +++ RF  VAYS  +R+DGKL+  GD TG +   DV ++ ILR FREHK P  V ++S D  Q+ S SDDKT+R+WD+P+ T + +  GH DY+R+   S  +P   I  XXXXXXXXXX  + +G V+ ++HG+PVEA    P GG+ VSAGG  +K  V+D+L GG  R +H L+NHQKTVT L  D + SRLLTG LD+HVKIYN++++ V
Sbjct:   40 AAVSSVHFSETTPYDFAVTASTRVQIYSSKTHQVKKTISRFKDVAYSGTIRADGKLVVAGDATGLIQIFDVSSRAILRTFREHKHPVHVTKFSSDKTQILSASDDKTVRIWDMPSETPLTIFTGHEDYIRSGMVSHDNPHL-IXXXXXXXXXXXXXXRTQGCVMTMNHGSPVEAVEMFPDGGVVVSAGGPSIK--VFDILAGG--RPMHALSNHQKTVTSLCFDNSHSRLLTGSLDQHVKIYNVQDYSV 283          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14216.3082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW07_9PHAE1.830e-16794.44UTP15_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z7W5_9STRA3.100e-7851.57WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A1X2II15_9FUNG5.650e-6848.59WD40-repeat-containing domain protein n=1 Tax=Absi... [more]
A0A1X2H797_SYNRA1.010e-6646.96WD40-repeat-containing domain protein n=1 Tax=Sync... [more]
A0A5D6XGD7_9STRA1.950e-6548.02UTP15_C domain-containing protein n=1 Tax=Pythium ... [more]
A0A484EDC8_BRELC2.400e-6544.84UTP15_C domain-containing protein n=1 Tax=Bremia l... [more]
A0A8K1FPI2_PYTOL3.960e-6546.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1X2GWQ2_9FUNG6.360e-6549.80WD40 repeat-like protein n=1 Tax=Hesseltinella ves... [more]
A0A507E144_9FUNG9.180e-6549.80UTP15_C domain-containing protein n=1 Tax=Powellom... [more]
A0A1Y2GYS6_9FUNG2.670e-6450.60WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14216contigE-fasciculatus_F_contig14216:138..2826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue1e-54
Seed eggNOG ortholog42099.EPrPV00000019552
Preferred nameUTP15
KEGG koko:K14549
KEGG Pathwayko03008,map03008
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022603,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045765,GO:0045766,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901342,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1904018,GO:1990904,GO:2000026,GO:2000112,GO:2000232,GO:2000234,GO:2001141
EggNOG free text desc.U3 small nucleolar RNA-associated protein. Source PGD
EggNOG OGs1MAGG@121069,KOG0310@1,KOG0310@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size759
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14216.3082.1prot_E-fasciculatus_F_contig14216.3082.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14216 138..2826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.6538944-CDS-E-fasciculatus_F_contig14216:137..3501622927911.6538944-CDS-E-fasciculatus_F_contig14216:137..350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 138..350 +
1695995748.656049-CDS-E-fasciculatus_F_contig14216:137..3501695995748.656049-CDS-E-fasciculatus_F_contig14216:137..350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 138..350 +
1622927911.668278-CDS-E-fasciculatus_F_contig14216:1104..12631622927911.668278-CDS-E-fasciculatus_F_contig14216:1104..1263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 1105..1263 +
1695995748.6704123-CDS-E-fasciculatus_F_contig14216:1104..12631695995748.6704123-CDS-E-fasciculatus_F_contig14216:1104..1263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 1105..1263 +
1622927911.6794043-CDS-E-fasciculatus_F_contig14216:1866..20911622927911.6794043-CDS-E-fasciculatus_F_contig14216:1866..2091Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 1867..2091 +
1695995748.682172-CDS-E-fasciculatus_F_contig14216:1866..20911695995748.682172-CDS-E-fasciculatus_F_contig14216:1866..2091Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 1867..2091 +
1622927911.6923444-CDS-E-fasciculatus_F_contig14216:2664..28261622927911.6923444-CDS-E-fasciculatus_F_contig14216:2664..2826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 2665..2826 +
1695995748.6918066-CDS-E-fasciculatus_F_contig14216:2664..28261695995748.6918066-CDS-E-fasciculatus_F_contig14216:2664..2826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14216 2665..2826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14216.3082.1

>prot_E-fasciculatus_F_contig14216.3082.1 ID=prot_E-fasciculatus_F_contig14216.3082.1|Name=mRNA_E-fasciculatus_F_contig14216.3082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=253bp
FVQTHNAPVSCVHFSATAPHDFAVTCSTHVSLHAAATGRQIRSVGRFDHV
AYSAQLRSDGKLMGTGDHTGTVIDVKTKGILRAFREHKAPTRVVRWSCDG
LQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGS
YDHTVKMWDTRQAKGNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASV
WDLLGGGGGRLLHTLANHQKTVTCLALDGTGSRLLTGGLDRHVKIYNLEN
FKV
back to top

mRNA from alignment at E-fasciculatus_F_contig14216:138..2826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14216.3082.1 ID=mRNA_E-fasciculatus_F_contig14216.3082.1|Name=mRNA_E-fasciculatus_F_contig14216.3082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2689bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14216:138..2826+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGTCCAGACCCACAATGCGCCGGTGTCATGCGTCCACTTCAGCGCCAC GGCCCCGCACGACTTCGCGGTCACGTGCTCCACACACGTCTCCCTGCACG CGGCGGCCACCGGTCGCCAAATTCGGAGCGTCGGCCGCTTCGACCACGTG GCGTACAGCGCTCAGCTCCGCTCGGACGGGAAGCTCATGGGGACCGGGGA CCACACCGGGACCGTCAAGGCGAGAAGGGGAGGGGGTTACTCATAACGTG CATGCCGTAGTCGTTAGGCCATTTGCATCCCTATAAAGCAGGGACGGAGC AAGCCGGTTTTCGCCGGACCAGGCTCTCACATCAAGCGCCGTGAGGTATT TGGCGAGTCACACGGAGGGTGCGCTGCCTCCTGCCCGTGGGTAGGGGCTC TGCTGTAGAAACAAGGGGTAGAGGTGGGGTAGAGGTGGGGTAGAGGTGGG ACTTTTCGAAGCTTGGGTGGTCGACGTGCTACCGCGAAACACGTGTCCTG GTTTTGCTGCTGTCTCGCGGGCTTCGCCTTCTTTCGCGATGAGAGGTGGC GCAGGTCGCGTAAGCCTTACTCCAGAGTTTTTTCTTTAGTCGCTGGTACG GCACACTCTATCGAGCCTTTCCTTCGTCGCAAGGTTGTCGCCATGTGGTG GATTCCGTCGATCGACCCATAGAGGTTGACATTGCGGAGCGAATGGGAGG CAGTTACCCTGGCTTGGACTTGAGCGCGGGAAGGAGTGCCACGTTTCAAA CGGAAGCGCCCATCAACAGCCGCGCGTTAGTTCACCAGCAACTATCCCTC CCCCCCCCCCGGCACTTTATTTTCGTCAGTCGCGATAACATGCCTGTCTG TACACGGCGTTGACAAGCAGGGTCTCAAATATGCGCGACGAAACCTCCAT GCCTTACTCCAACAGTACATGTGTTCTTGTTTGTTTGTTTGTTTGTTTGT TTGTTTGTGTGTGTCAGGTGATCGACGTTAAAACCAAGGGAATTCTCCGA GCATTCCGCGAGCACAAGGCGCCTACGCGAGTCGTGAGATGGTCCTGCGA CGGGCTTCAACTGGCCAGCGGCTCCGACGATAAAACGCTCCGCCTCTGGG ATCTGCCAACGTCTACGGCCGTCCAGGTACGGCACTTTTCAGCACTGCTG TGTTGATGGCTGCTGTTGCTGATGTTGGTGGCAATAGTGGTGCTTGGATG GTGTTGATGCTATTAGCTGTGGCAGGGGTGGTGTGCGTACTAATGTTGGT ATTAGAGCTGTTGGTGTGGGATGCTGGTGCTGCTGTTTGTGATCTGTGTT GATGCTGTTGGCTGTGGCGGTATTGGTGTTGGGGATACATCGCACTGGTG TAGGAAGTGCGGTGCGGTGGCGGTGCTGCTATTGCCGCTGTGGTGTGGTT GTTGCGGCTTGTCCAGTACTGATGCCGATGGCGTGGTGGCGTCTAGATAT ACGAGATTGGTGCAAGAGCTGCCGGTGTGGTCGTGCTGGTGCTGTTGTTG ATTTTCTTCGTTGTTTCTCATAGTGGGGCTAGATCGATCTTGATGCTAAA TTGTTGGTGTTGGTATCTGGAGGTAAGACTGACGCTGAAATCGTTGGTGT TCTTACCGCTGCTGTTGGTGTCTTCCTTTTCACAATATCACCACAGTGTT TCATATCGTGCCACATACACACGGAATGCCCACCTTGTACGTGGGTCTTC ACCAAACACCCTGCCGCAACAAACCGCAGGTCAGGCAAGGCCACGCAGAC TACGTACGCGCTCTGGCCGCCTCCCCCTCGAGCCCGGACACCTGGATCTC AGGGTCGTACGACCACACCGTCAAGATGTGGGACACCAGACAAGCCAAGG GAAACGTCCTGGAACTTTCCCACGGGGCTCCGGTGGAGGCGTGCCTGTTT TTGCCGGGGGGGGGTCTCTGCGTCAGCGCCGGCGGAAACGAAGTCAAGGC GAGTGTCTAGTGTCTGGGGGTGCAGCAAGCGCCTGGACTTGAAGTCACGG CAGTTGTTACACGTGAAGAGTTCGAGGTTGTCGAAACGCATGATCTTGAG ATGAGAATCTGGTACCAAGTATTCAAGTGTCCCTCTGGAGTGGGCCAGTG AGAGCATAGTTTCATCAAGGGGTGATGGAAGATGAACCAACCCACAGCTG GCGCCCGGCTGCGGTGTGACGTTTCCCAGGCTCAACACCGCCCAAGCCAT GCATACCACAAGCGCACCACATCCACCGCAGTAGACGTTCAGTCCCCGGT CGTCAGTTACCAGCCCGATGTGGCACTTGGCTGACAGGATAGGATATGGG GACTGCTGTTCCTGATCAAGCTAACAATAAGAGCGGCCACAAATCGTCCC ACTACTACCGCTCCACAAACACCCCCTCCACTACAGCAGCCATCAACTGC ATATACATGACCCACACGGGAAAGATGGATCCGGTTCGGATTATATTTGG AGATGGAGGGTGGGATGGGTGGGCGTGTCTTATCACATGCAGCCGGTTGA GTGATTCCCTCTTTTTGTTTTTTCCAGGTGTGGGACTTGCTTGGGGGGGG AGGGGGGCGGCTGTTGCACACGCTGGCGAACCACCAGAAGACAGTGACCT GCCTCGCGCTGGATGGCACCGGATCGCGGCTGCTGACGGGGGGACTGGAT AGGCACGTCAAGATTTACAACCTCGAGAACTTCAAGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14216:138..2826+

>mRNA_E-fasciculatus_F_contig14216.3082.1 ID=mRNA_E-fasciculatus_F_contig14216.3082.1|Name=mRNA_E-fasciculatus_F_contig14216.3082.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14216:138..2826+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGTCCAGACCCACAATGCGCCGGTGTCATGCGTCCACTTCAGCGCCAC
GGCCCCGCACGACTTCGCGGTCACGTGCTCCACACACGTCTCCCTGCACG
CGGCGGCCACCGGTCGCCAAATTCGGAGCGTCGGCCGCTTCGACCACGTG
GCGTACAGCGCTCAGCTCCGCTCGGACGGGAAGCTCATGGGGACCGGGGA
CCACACCGGGACCTTTGTCCAGACCCACAATGCGCCGGTGTCATGCGTCC
ACTTCAGCGCCACGGCCCCGCACGACTTCGCGGTCACGTGCTCCACACAC
GTCTCCCTGCACGCGGCGGCCACCGGTCGCCAAATTCGGAGCGTCGGCCG
CTTCGACCACGTGGCGTACAGCGCTCAGCTCCGCTCGGACGGGAAGCTCA
TGGGGACCGGGGACCACACCGGGACCGTGATCGACGTTAAAACCAAGGGA
ATTCTCCGAGCATTCCGCGAGCACAAGGCGCCTACGCGAGTCGTGAGATG
GTCCTGCGACGGGCTTCAACTGGCCAGCGGCTCCGACGATAAAACGCTCC
GCCTCTGGGATCTGCCAACGTCTACGGCCGTCCAGGTGATCGACGTTAAA
ACCAAGGGAATTCTCCGAGCATTCCGCGAGCACAAGGCGCCTACGCGAGT
CGTGAGATGGTCCTGCGACGGGCTTCAACTGGCCAGCGGCTCCGACGATA
AAACGCTCCGCCTCTGGGATCTGCCAACGTCTACGGCCGTCCAGGTCAGG
CAAGGCCACGCAGACTACGTACGCGCTCTGGCCGCCTCCCCCTCGAGCCC
GGACACCTGGATCTCAGGGTCGTACGACCACACCGTCAAGATGTGGGACA
CCAGACAAGCCAAGGGAAACGTCCTGGAACTTTCCCACGGGGCTCCGGTG
GAGGCGTGCCTGTTTTTGCCGGGGGGGGGTCTCTGCGTCAGCGCCGGCGG
AAACGAAGTCAAGGCGAGTGTCAGGCAAGGCCACGCAGACTACGTACGCG
CTCTGGCCGCCTCCCCCTCGAGCCCGGACACCTGGATCTCAGGGTCGTAC
GACCACACCGTCAAGATGTGGGACACCAGACAAGCCAAGGGAAACGTCCT
GGAACTTTCCCACGGGGCTCCGGTGGAGGCGTGCCTGTTTTTGCCGGGGG
GGGGTCTCTGCGTCAGCGCCGGCGGAAACGAAGTCAAGGCGAGTGTGTGG
GACTTGCTTGGGGGGGGAGGGGGGCGGCTGTTGCACACGCTGGCGAACCA
CCAGAAGACAGTGACCTGCCTCGCGCTGGATGGCACCGGATCGCGGCTGC
TGACGGGGGGACTGGATAGGCACGTCAAGATTTACAACCTCGAGAACTTC
AAGGTGGTGTGGGACTTGCTTGGGGGGGGAGGGGGGCGGCTGTTGCACAC
GCTGGCGAACCACCAGAAGACAGTGACCTGCCTCGCGCTGGATGGCACCG
GATCGCGGCTGCTGACGGGGGGACTGGATAGGCACGTCAAGATTTACAAC
CTCGAGAACTTCAAGGTG
back to top