prot_E-fasciculatus_F_contig142.3064.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig142.3064.1
Unique Nameprot_E-fasciculatus_F_contig142.3064.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length102
Homology
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.060e-60
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKADGADGGANGMDEEEDEG 101
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRG EEDEANAKADGA+G ANGMDEEEDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEG-ANGMDEEEDEG 101          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 143 bits (360), Expect = 1.650e-42
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 85
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 93          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 141 bits (356), Expect = 5.300e-42
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 85
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 85          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 141 bits (356), Expect = 5.300e-42
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDE 79
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRG  EDE
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDE 80          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 141 bits (355), Expect = 7.300e-42
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANA 82
            PVNPKPFLN+LTGKP++VKLKWGMEYKGFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYLRGAE++  +A
Sbjct:    6 PVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYLRGAEDEGGDA 84          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 141 bits (356), Expect = 7.590e-42
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEED 78
            + PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYLRGAEE+
Sbjct:    4 SVPVNPKPFLNQLTGKPVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYLRGAEEE 80          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 141 bits (355), Expect = 7.980e-42
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 85
            + PVNPKPFLN LTGKPVMVKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:    4 SVPVNPKPFLNTLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 140 bits (354), Expect = 1.100e-41
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 85
            PVNPKPFLN LTGKPV+VKLKWGMEYKGFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYLRG  ED+    AD
Sbjct:    7 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDEIEDAD 88          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 140 bits (353), Expect = 1.470e-41
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 85
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEYVDG+F GNLG++LIRCNNVLYLRG  EDE    AD
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86          
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A5P1EWT9_ASPOF (Sm protein F n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 140 bits (353), Expect = 1.870e-41
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 85
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE    AD
Sbjct:   11 AIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 94          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI4.060e-6096.08Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7J6WA49_THATH1.650e-4278.57Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A6P9F5Z8_JUGRE5.300e-4276.47Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A176VZF1_MARPO5.300e-4283.75Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
C1EHA5_MICCC7.300e-4282.28Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=... [more]
A0A7S0SJP6_9CHLO7.590e-4283.12Sm protein F n=1 Tax=Mantoniella antarctica TaxID=... [more]
A0A835M2E4_9MAGN7.980e-4277.38Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
A0A7I8LGH6_SPIIN1.100e-4180.49Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]
A0A804J679_MUSAM1.470e-4179.07Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A5P1EWT9_ASPOF1.870e-4177.38Sm protein F n=1 Tax=Asparagus officinalis TaxID=4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 4.4E-23
score: 92.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..72
e-value: 3.8E-20
score: 71.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 1.6E-30
score: 106.4
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN POLYPEPTIDE Fcoord: 1..81
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..83
e-value: 8.1E-37
score: 123.0
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..81
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig142contigE-fasciculatus_F_contig142:5788..8218 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig142.3064.1mRNA_E-fasciculatus_F_contig142.3064.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig142 5788..8218 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig142.3064.1 ID=prot_E-fasciculatus_F_contig142.3064.1|Name=mRNA_E-fasciculatus_F_contig142.3064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEY
VDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKADGADGGANGMDEEEDE
G*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR016487Lsm6/sSmF
IPR001163LSM_dom_euk/arc