mRNA_E-fasciculatus_F_contig142.3064.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig142.3064.1
Unique NamemRNA_E-fasciculatus_F_contig142.3064.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.060e-60
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKADGADGGANGMDEEEDEG 303
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRG EEDEANAKADGA+G ANGMDEEEDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEG-ANGMDEEEDEG 101
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 143 bits (360), Expect = 1.650e-42
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 255
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 93
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 141 bits (356), Expect = 5.300e-42
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 255
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 85
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 141 bits (356), Expect = 5.300e-42
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDE 237
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRG  EDE
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDE 80
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 141 bits (355), Expect = 7.300e-42
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:   10 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANA 246
            PVNPKPFLN+LTGKP++VKLKWGMEYKGFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYLRGAE++  +A
Sbjct:    6 PVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYLRGAEDEGGDA 84
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 141 bits (356), Expect = 7.590e-42
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEED 234
            + PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYLRGAEE+
Sbjct:    4 SVPVNPKPFLNQLTGKPVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYLRGAEEE 80
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 141 bits (355), Expect = 7.980e-42
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 255
            + PVNPKPFLN LTGKPVMVKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:    4 SVPVNPKPFLNTLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 140 bits (354), Expect = 1.100e-41
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   10 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 255
            PVNPKPFLN LTGKPV+VKLKWGMEYKGFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYLRG  ED+    AD
Sbjct:    7 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDEIEDAD 88
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 140 bits (353), Expect = 1.470e-41
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 255
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEYVDG+F GNLG++LIRCNNVLYLRG  EDE    AD
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86
[Close]
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Match: A0A5P1EWT9_ASPOF (Sm protein F n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 140 bits (353), Expect = 1.870e-41
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKAD 255
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE    AD
Sbjct:   11 AIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 94
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig142.3064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI4.060e-6096.08Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7J6WA49_THATH1.650e-4278.57Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A6P9F5Z8_JUGRE5.300e-4276.47Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A176VZF1_MARPO5.300e-4283.75Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
C1EHA5_MICCC7.300e-4282.28Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=... [more]
A0A7S0SJP6_9CHLO7.590e-4283.12Sm protein F n=1 Tax=Mantoniella antarctica TaxID=... [more]
A0A835M2E4_9MAGN7.980e-4277.38Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
A0A7I8LGH6_SPIIN1.100e-4180.49Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]
A0A804J679_MUSAM1.470e-4179.07Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A5P1EWT9_ASPOF1.870e-4177.38Sm protein F n=1 Tax=Asparagus officinalis TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig142contigE-fasciculatus_F_contig142:5788..8218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue2.7e-46
Seed eggNOG ortholog2880.D7FWG1
Preferred nameSNRPF
KEGG koko:K11098
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:1990935
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsKOG3482@1,KOG3482@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein SmF
Ec32 orthologEc-07_007380.1
Exons2
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.8959892-CDS-E-fasciculatus_F_contig142:5787..60021622927909.8959892-CDS-E-fasciculatus_F_contig142:5787..6002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 5788..6002 -
1695995747.8081613-CDS-E-fasciculatus_F_contig142:5787..60021695995747.8081613-CDS-E-fasciculatus_F_contig142:5787..6002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 5788..6002 -
1622927909.9097612-CDS-E-fasciculatus_F_contig142:8127..82181622927909.9097612-CDS-E-fasciculatus_F_contig142:8127..8218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 8128..8218 -
1695995747.8204072-CDS-E-fasciculatus_F_contig142:8127..82181695995747.8204072-CDS-E-fasciculatus_F_contig142:8127..8218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 8128..8218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig142.3064.1prot_E-fasciculatus_F_contig142.3064.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig142 5788..8218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig142.3064.1

>prot_E-fasciculatus_F_contig142.3064.1 ID=prot_E-fasciculatus_F_contig142.3064.1|Name=mRNA_E-fasciculatus_F_contig142.3064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEY
VDGEFAGNLGDVLIRCNNVLYLRGAEEDEANAKADGADGGANGMDEEEDE
G*
back to top

mRNA from alignment at E-fasciculatus_F_contig142:5788..8218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig142.3064.1 ID=mRNA_E-fasciculatus_F_contig142.3064.1|Name=mRNA_E-fasciculatus_F_contig142.3064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2431bp|location=Sequence derived from alignment at E-fasciculatus_F_contig142:5788..8218- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACACCTGTGAACCCGAAGCCCTTCTTGAATGAGCTCACAGGGAA
GCCGGTGATGGTGAAGCTGAAGTGGGGCATGGAATACAAGGGTGAGTGCA
AATTTCTTTTTTTTGAAAATATCCATGGCCGCCCTCCCTAGTCTAGCCTA
CATTGCACCAGTGCCACCGCAGCGGCATCAGGCGAAACAACAAACAACAA
CGCCAACACAACAGGTACAATATTGCCATCCACTGATCTACAGCAGTGAC
ACAGCAGTGCACTCTCCCCTTGGAACGGTTGCGAGGAGTTCGGAACGCGC
GCAGTCGACAAAGCAAGTGCCCGCTCAGTGGCGTCGTGTCAAATGTCGGC
GTGCAGGCCGCGCTGCTTGACGAAAACCCTGTGGTATATTGTACTCCTGG
TCCTGCTATAGGCGCGCTCCTCTCTCGTGCTCAGTTCCGATCTACGTGGG
TGCCTCCTCTGTCGGGAGAGCGTTTGGCTCACCTTGGGCAGTTGTTGCAA
ACAGGCGCTCATTCGACTCGCATTATTGCTGCTGTAGACGAACTCCGAGA
AAAAACTGTCTGGTACTATCTACATCAAACTGCTGTTGTTCGTGCAAAAT
CGTATCCTGGTATTGTACTGCCTGCCGCTTGCAGAGAGATAAAGTCCACG
GAGATGGCGGCGTGTGTGCATAGAAACATAACCCGATGCTGGTAGTTCCT
TCTTCGCCATTAAGTCAACAACACCAACTGGCCGAATAATTTTGTACCGA
TATGCTACAATCTGAAAAGATTTCTGAAGGATTTGAACATTAAAAAAAAA
ACATAGTCTACTAGCCGGAGCCGCGCTTCATGCTATGTATCTGTATTTTT
TTCGCAGCTGTGAGTGAACCCTTTCTGCAATACAACGCACACCTAAGGAG
GGTCACGAATGTGTCTCCTTCTTTTTTGCTGATGAGCTATACCCCGCATC
GCCCTCGTTGATCTCCATATTGCCAGTGCAAAGAAAAGCTGCTGCGTTGG
ATATCCTCCCCTATTCCGCGCTGTAGTGATAGTAGTACTGTTGTCCGCTC
ACGTGCGCCGACATCGCGGGCCGAAGAAATAAGAAAACAGTCGAGCGACC
ACAATTGCTTCCAAGCACTGTCCGTGCTGCTGCGCTGCCGGATGTGCCCC
TCTACCAACATGGGTTGCTGTTCACCAGGCATCCACACGCTCTGCTGCGG
TCATTCTGAGGGGTGTGTGGTGTGTGGCTCACCGTGAATATGCCGCAACA
AATGTACCAACAAGTGCTGTTGGCTCACTGCTGGCAGCACCACATTCACG
ATGACTGCAATTTAGTGTGTGTATTCTGCTTACTACCTCTAAAGGCGCCG
GAATGCCTACAGGGTAGTAAGCCTCAGAAAATCTTGCGGTGGCGGTATTG
ATCGGATATTTTGTCTAGAGGACACTGCACCTTGTGCGGTTTTCGGCCTC
TCGACGCGGCCGGTCGTTCCCGCGGTCGCGATGCAGAAACATATTCTGGG
TGGTTTTTGGTCGAATCTATCCCTCGATTCGCGCGAAAAAAACGCCTTCC
GAAAAGCCTAACCCAACTATTAGTAATTCCCGAAACAGTAACGTACCCGG
CGAGTCTTTTGTGGACCCCCAAGTGGGACAACAGCAGTGCAGGACAACGC
ACCCGCCGATGGTTGTTCGCTATTATAACGTGCATTATTTTCAACAGACC
AGTGGAAGTTGCTGTGACGAATGCTCTGCGGCGAAGCTCCAACAGCGGTA
CCAAACAAGCAATTGTGCTGCACATGCTCAAGTCTGCTCAAGTAATATCC
TGCCCTGTAGCGGCGAACGCAGGAGTAGGGTCACGTAAATGCGAGAGGCA
GTTTCAACGGTGGTTTTTGTGGCGGAAATGATCTGACGTTGTTCCTATGT
TTGGAGCCGAGCGATATGTTTGAGTTTCAACCACCTGGTTTTTCAGGGGA
GCTTTACCACCCACCGCTGACTTCGAACGTACAGAGCCTCGCAAAATGTT
CTCCAACGCTGAGTTGGTTTTGCCATTCGCACGTCTGGTAACAAATTTGT
GCTCACAGCCGTAAGTAGTTTCTGCTTCAAAATTCGAAGATCTCTCAGAT
CGGAGGACGTAGGAATGTAACTGTTTGCCCCATCCCCCGAAAGTGATGCG
TGATCAACGGTCGACTTACTTCCGGCGAGAACTAACGATAAGACCCGCGC
ATTTCCTTTCTCCCAGGATTTCTGGTGTCGGTGGACACATACATGAACCT
CCTTCTTACATCTACAGAGGAATACGTGGACGGCGAGTTCGCGGGCAACT
TGGGGGACGTGCTCATCCGCTGTAACAACGTCTTGTACCTTAGGGGGGCA
GAAGAGGACGAGGCCAACGCAAAAGCGGATGGGGCCGACGGGGGGGCCAA
TGGGATGGACGAGGAGGAGGATGAAGGCTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig142:5788..8218-

>mRNA_E-fasciculatus_F_contig142.3064.1 ID=mRNA_E-fasciculatus_F_contig142.3064.1|Name=mRNA_E-fasciculatus_F_contig142.3064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig142:5788..8218- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACACCTGTGAACCCGAAGCCCTTCTTGAATGAGCTCACAGGGAA
GCCGGTGATGGTGAAGCTGAAGTGGGGCATGGAATACAAGGATGGCGACA
CCTGTGAACCCGAAGCCCTTCTTGAATGAGCTCACAGGGAAGCCGGTGAT
GGTGAAGCTGAAGTGGGGCATGGAATACAAGGGATTTCTGGTGTCGGTGG
ACACATACATGAACCTCCTTCTTACATCTACAGAGGAATACGTGGACGGC
GAGTTCGCGGGCAACTTGGGGGACGTGCTCATCCGCTGTAACAACGTCTT
GTACCTTAGGGGGGCAGAAGAGGACGAGGCCAACGCAAAAGCGGATGGGG
CCGACGGGGGGGCCAATGGGATGGACGAGGAGGAGGATGAAGGCTGAGAT
TTCTGGTGTCGGTGGACACATACATGAACCTCCTTCTTACATCTACAGAG
GAATACGTGGACGGCGAGTTCGCGGGCAACTTGGGGGACGTGCTCATCCG
CTGTAACAACGTCTTGTACCTTAGGGGGGCAGAAGAGGACGAGGCCAACG
CAAAAGCGGATGGGGCCGACGGGGGGGCCAATGGGATGGACGAGGAGGAG
GATGAAGGCTGA
back to top