mRNA_E-fasciculatus_F_contig14191.3061.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14191.3061.1
Unique NamemRNA_E-fasciculatus_F_contig14191.3061.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A2D2AH28_9PHAE (Prolycopene isomerase-like1 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A2D2AH28_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.000e-32
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1
Query:   61 MLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
            ML+RHGDSVTVLESH+LPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDV+EEEV
Sbjct:    1 MLARHGDSVTVLESHFLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVVEEEV 61          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S0CUQ0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUQ0_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 1.110e-31
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1
Query:   10 TDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEVS 246
            +DVVVIGSG+GGLS  AML+R+G +VTVLESHYLPGG AH FD +G++FD GPSL+AGMS+P  NPLRQ+LD + EEVS
Sbjct:   79 SDVVVIGSGIGGLSCGAMLARYGYNVTVLESHYLPGGAAHGFDRKGFKFDTGPSLYAGMSQPSVNPLRQVLDAIGEEVS 157          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S4DB24_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB24_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.770e-31
Identity = 50/76 (65.79%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVL 231
            ++ DV+VIGSG+GGLS AA+L+ +GD V VLESHYLPGG AH F+ +GYRFD+GPS+W+G+S+  TNPLRQ+LDV+
Sbjct:   55 NDVDVLVIGSGIGGLSCAALLANYGDKVKVLESHYLPGGCAHGFERDGYRFDSGPSMWSGLSQKSTNPLRQVLDVV 130          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A2D2AH38_9PHAE (Prolycopene isomerase-like1 n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A2D2AH38_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.520e-30
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1
Query:   61 MLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
            MLSRHGD VTVLESHY PGGVAHAFDI+GYRFDAGPSLWAGMSE GTNPLRQILDVLEEEV
Sbjct:    1 MLSRHGDKVTVLESHYHPGGVAHAFDIDGYRFDAGPSLWAGMSEAGTNPLRQILDVLEEEV 61          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S1P995_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P995_9ALVE)

HSP 1 Score: 118 bits (296), Expect = 2.120e-29
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEVS 246
             ETDVVVIGSG+GGL  AA+L+++GD VTV ESH  PGG AH+F+ +GY FD+GPSLWAGMS+P  NPLRQ+LD + EE S
Sbjct:   20 QETDVVVIGSGIGGLCCAALLAKYGDDVTVCESHVYPGGAAHSFERDGYMFDSGPSLWAGMSQPSINPLRQVLDAVGEEDS 100          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A835Z9G8_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.200e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
             E DV VIGSG+GGLSAA + +R+G    V ESHY PGGVAH+F ++GY+FDAGPSLWA M++  TNPLRQ+LD L E+V
Sbjct:    8 REVDVCVIGSGIGGLSAAGLSARYGLHTEVFESHYHPGGVAHSFQVDGYKFDAGPSLWASMNQSSTNPLRQVLDALGEDV 87          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A2K3CAA9_9CHRO (Carotene isomerase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2K3CAA9_9CHRO)

HSP 1 Score: 112 bits (279), Expect = 3.980e-27
Identity = 49/82 (59.76%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEVS 246
            S++ DV++IGSG+GGL A A+L+R+G  VTV ESH +PGG AH F+ +GY FD+GPSL++G+S P  NPLRQ+LD +EEEV+
Sbjct:    2 SNDRDVIIIGSGIGGLCAGALLARYGFQVTVCESHTIPGGAAHGFERDGYLFDSGPSLYSGLSAPSANPLRQVLDAIEEEVT 83          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A355DP10_9CYAN (Carotene isomerase (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11162 TaxID=2055781 RepID=A0A355DP10_9CYAN)

HSP 1 Score: 105 bits (262), Expect = 7.730e-27
Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMS-EPGTNPLRQILDVLEEEV 243
              TD++VIGSG+GGLS AA+L+R+G +VTV ESH +PGG AH+F+  G++FD+GPSL++G+S  P  NPLRQ+LD + EE+
Sbjct:    2 QNTDIIVIGSGIGGLSCAALLARYGFNVTVCESHSIPGGAAHSFERNGFKFDSGPSLYSGLSYRPSANPLRQVLDAIAEEL 82          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A5B8NM46_9CHRO (FAD-dependent oxidoreductase n=1 Tax=Euhalothece natronophila Z-M001 TaxID=522448 RepID=A0A5B8NM46_9CHRO)

HSP 1 Score: 110 bits (276), Expect = 1.060e-26
Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
            + ETD++VIGSG+GGLSAAA+L+R+G  VTV E+H + GG AHAF+ +GY FD+GPSL++G+S P  NPLRQ+LD + EEV
Sbjct:    4 TQETDIIVIGSGIGGLSAAALLARYGFQVTVCEAHTIAGGAAHAFERQGYLFDSGPSLFSGLSTPSPNPLRQVLDAIGEEV 84          
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S0LT63_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LT63_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 1.250e-26
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
            S E DVVVIGSG+GGLSAA +LSR+G  V VLESH   GG AH+F+  GY FD+GPSLW+GMS    NPLRQ+LD +EE+V
Sbjct:   28 SAEVDVVVIGSGIGGLSAACLLSRYGKKVCVLESHEHAGGAAHSFERGGYTFDSGPSLWSGMSSSSVNPLRQVLDAVEEDV 108          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D2AH28_9PHAE3.000e-3295.08Prolycopene isomerase-like1 n=2 Tax=Scytosiphonace... [more]
A0A7S0CUQ0_9EUKA1.110e-3170.89Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S4DB24_HETAK1.770e-3165.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D2AH38_9PHAE1.520e-3093.44Prolycopene isomerase-like1 n=1 Tax=Sargassum inte... [more]
A0A7S1P995_9ALVE2.120e-2966.67Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A835Z9G8_9STRA3.200e-2763.75Amine oxidase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A2K3CAA9_9CHRO3.980e-2759.76Carotene isomerase n=3 Tax=Cyanobacteria TaxID=111... [more]
A0A355DP10_9CYAN7.730e-2758.02Carotene isomerase (Fragment) n=1 Tax=Cyanobacteri... [more]
A0A5B8NM46_9CHRO1.060e-2661.73FAD-dependent oxidoreductase n=1 Tax=Euhalothece n... [more]
A0A7S0LT63_9EUKA1.250e-2665.43Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14191contigE-fasciculatus_F_contig14191:2665..3161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score111.3
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog13035.Dacsa_3262
EggNOG free text desc.COG1233 Phytoene dehydrogenase and related
EggNOG OGs1G0AY@1117,COG1233@1,COG1233@2
Ec32 ortholog descriptioncarotenoid isomerase-like protein
Ec32 orthologEc-03_001460.1
COG Functional cat.Q
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.687265-CDS-E-fasciculatus_F_contig14191:2664..28161622927909.687265-CDS-E-fasciculatus_F_contig14191:2664..2816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14191 2665..2816 +
1695995747.7442572-CDS-E-fasciculatus_F_contig14191:2664..28161695995747.7442572-CDS-E-fasciculatus_F_contig14191:2664..2816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14191 2665..2816 +
1622927909.7026458-CDS-E-fasciculatus_F_contig14191:3064..31611622927909.7026458-CDS-E-fasciculatus_F_contig14191:3064..3161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14191 3065..3161 +
1695995747.755671-CDS-E-fasciculatus_F_contig14191:3064..31611695995747.755671-CDS-E-fasciculatus_F_contig14191:3064..3161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14191 3065..3161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14191.3061.1prot_E-fasciculatus_F_contig14191.3061.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14191 2665..3161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14191.3061.1

>prot_E-fasciculatus_F_contig14191.3061.1 ID=prot_E-fasciculatus_F_contig14191.3061.1|Name=mRNA_E-fasciculatus_F_contig14191.3061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGY
RFDAGPSLWAGMSEPGTNPLRQILDVLEEEVS*
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mRNA from alignment at E-fasciculatus_F_contig14191:2665..3161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14191.3061.1 ID=mRNA_E-fasciculatus_F_contig14191.3061.1|Name=mRNA_E-fasciculatus_F_contig14191.3061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=497bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14191:2665..3161+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCATGAAACCGACGTTGTCGTGATTGGCTCGGGTGTTGGCGGGCTGTC GGCGGCGGCAATGCTATCTCGCCACGGGGACTCCGTGACTGTCCTGGAGT CGCATTACCTTCCCGGAGGGGTTGCTCACGCCTTCGACATTGAAGGCTAC AGGTGATCTCGATTGAAAAAAAACAGAGAGGTAGTACAAGTAGTTAAATT CGACATCGAAGGCCACAGGCCGTCTCGATAAAACAGAAACACATTTACCA TAGGTGGACAGAGTTATGGAGCCATGGGGTGCCGACAGGCCATAAGCTAG CACCTCCCAACCGTGGGTGTATGCGGTGGGGCTTCGGATGTACGCGCGGT TCCAACATCGCGGAGGCTGTTTTCTCCTGTTTCGACGGGCGATCGATCAG GTTTGACGCTGGGCCATCGCTGTGGGCGGGGATGTCGGAGCCTGGGACGA ACCCTTTGCGGCAGATCTTGGACGTTTTGGAGGAGGAGGTGAGCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14191:2665..3161+

>mRNA_E-fasciculatus_F_contig14191.3061.1 ID=mRNA_E-fasciculatus_F_contig14191.3061.1|Name=mRNA_E-fasciculatus_F_contig14191.3061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14191:2665..3161+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCATGAAACCGACGTTGTCGTGATTGGCTCGGGTGTTGGCGGGCTGTC
GGCGGCGGCAATGCTATCTCGCCACGGGGACTCCGTGACTGTCCTGGAGT
CGCATTACCTTCCCGGAGGGGTTGCTCACGCCTTCGACATTGAAGGCTAC
AGTCGCATGAAACCGACGTTGTCGTGATTGGCTCGGGTGTTGGCGGGCTG
TCGGCGGCGGCAATGCTATCTCGCCACGGGGACTCCGTGACTGTCCTGGA
GTCGCATTACCTTCCCGGAGGGGTTGCTCACGCCTTCGACATTGAAGGCT
ACAGGTTTGACGCTGGGCCATCGCTGTGGGCGGGGATGTCGGAGCCTGGG
ACGAACCCTTTGCGGCAGATCTTGGACGTTTTGGAGGAGGAGGTGAGCTG
AGTTTGACGCTGGGCCATCGCTGTGGGCGGGGATGTCGGAGCCTGGGACG
AACCCTTTGCGGCAGATCTTGGACGTTTTGGAGGAGGAGGTGAGCTGA
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