mRNA_E-fasciculatus_F_contig14191.3061.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A2D2AH28_9PHAE (Prolycopene isomerase-like1 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A2D2AH28_9PHAE) HSP 1 Score: 125 bits (315), Expect = 3.000e-32 Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1
Query: 61 MLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
ML+RHGDSVTVLESH+LPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDV+EEEV
Sbjct: 1 MLARHGDSVTVLESHFLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVVEEEV 61
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S0CUQ0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUQ0_9EUKA) HSP 1 Score: 121 bits (303), Expect = 1.110e-31 Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 10 TDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEVS 246
+DVVVIGSG+GGLS AML+R+G +VTVLESHYLPGG AH FD +G++FD GPSL+AGMS+P NPLRQ+LD + EEVS
Sbjct: 79 SDVVVIGSGIGGLSCGAMLARYGYNVTVLESHYLPGGAAHGFDRKGFKFDTGPSLYAGMSQPSVNPLRQVLDAIGEEVS 157
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S4DB24_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB24_HETAK) HSP 1 Score: 116 bits (290), Expect = 1.770e-31 Identity = 50/76 (65.79%), Postives = 66/76 (86.84%), Query Frame = 1
Query: 4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVL 231
++ DV+VIGSG+GGLS AA+L+ +GD V VLESHYLPGG AH F+ +GYRFD+GPS+W+G+S+ TNPLRQ+LDV+
Sbjct: 55 NDVDVLVIGSGIGGLSCAALLANYGDKVKVLESHYLPGGCAHGFERDGYRFDSGPSMWSGLSQKSTNPLRQVLDVV 130
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A2D2AH38_9PHAE (Prolycopene isomerase-like1 n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A2D2AH38_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.520e-30 Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1
Query: 61 MLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
MLSRHGD VTVLESHY PGGVAHAFDI+GYRFDAGPSLWAGMSE GTNPLRQILDVLEEEV
Sbjct: 1 MLSRHGDKVTVLESHYHPGGVAHAFDIDGYRFDAGPSLWAGMSEAGTNPLRQILDVLEEEV 61
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S1P995_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P995_9ALVE) HSP 1 Score: 118 bits (296), Expect = 2.120e-29 Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 1
Query: 4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEVS 246
ETDVVVIGSG+GGL AA+L+++GD VTV ESH PGG AH+F+ +GY FD+GPSLWAGMS+P NPLRQ+LD + EE S
Sbjct: 20 QETDVVVIGSGIGGLCCAALLAKYGDDVTVCESHVYPGGAAHSFERDGYMFDSGPSLWAGMSQPSINPLRQVLDAVGEEDS 100
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A835Z9G8_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G8_9STRA) HSP 1 Score: 112 bits (280), Expect = 3.200e-27 Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
E DV VIGSG+GGLSAA + +R+G V ESHY PGGVAH+F ++GY+FDAGPSLWA M++ TNPLRQ+LD L E+V
Sbjct: 8 REVDVCVIGSGIGGLSAAGLSARYGLHTEVFESHYHPGGVAHSFQVDGYKFDAGPSLWASMNQSSTNPLRQVLDALGEDV 87
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A2K3CAA9_9CHRO (Carotene isomerase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2K3CAA9_9CHRO) HSP 1 Score: 112 bits (279), Expect = 3.980e-27 Identity = 49/82 (59.76%), Postives = 67/82 (81.71%), Query Frame = 1
Query: 1 SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEVS 246
S++ DV++IGSG+GGL A A+L+R+G VTV ESH +PGG AH F+ +GY FD+GPSL++G+S P NPLRQ+LD +EEEV+
Sbjct: 2 SNDRDVIIIGSGIGGLCAGALLARYGFQVTVCESHTIPGGAAHGFERDGYLFDSGPSLYSGLSAPSANPLRQVLDAIEEEVT 83
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A355DP10_9CYAN (Carotene isomerase (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11162 TaxID=2055781 RepID=A0A355DP10_9CYAN) HSP 1 Score: 105 bits (262), Expect = 7.730e-27 Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 1
Query: 4 HETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMS-EPGTNPLRQILDVLEEEV 243
TD++VIGSG+GGLS AA+L+R+G +VTV ESH +PGG AH+F+ G++FD+GPSL++G+S P NPLRQ+LD + EE+
Sbjct: 2 QNTDIIVIGSGIGGLSCAALLARYGFNVTVCESHSIPGGAAHSFERNGFKFDSGPSLYSGLSYRPSANPLRQVLDAIAEEL 82
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A5B8NM46_9CHRO (FAD-dependent oxidoreductase n=1 Tax=Euhalothece natronophila Z-M001 TaxID=522448 RepID=A0A5B8NM46_9CHRO) HSP 1 Score: 110 bits (276), Expect = 1.060e-26 Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 1 SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
+ ETD++VIGSG+GGLSAAA+L+R+G VTV E+H + GG AHAF+ +GY FD+GPSL++G+S P NPLRQ+LD + EEV
Sbjct: 4 TQETDIIVIGSGIGGLSAAALLARYGFQVTVCEAHTIAGGAAHAFERQGYLFDSGPSLFSGLSTPSPNPLRQVLDAIGEEV 84
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Match: A0A7S0LT63_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LT63_9EUKA) HSP 1 Score: 110 bits (276), Expect = 1.250e-26 Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYRFDAGPSLWAGMSEPGTNPLRQILDVLEEEV 243
S E DVVVIGSG+GGLSAA +LSR+G V VLESH GG AH+F+ GY FD+GPSLW+GMS NPLRQ+LD +EE+V
Sbjct: 28 SAEVDVVVIGSGIGGLSAACLLSRYGKKVCVLESHEHAGGAAHSFERGGYTFDSGPSLWSGMSSSSVNPLRQVLDAVEEDV 108 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14191.3061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14191.3061.1 >prot_E-fasciculatus_F_contig14191.3061.1 ID=prot_E-fasciculatus_F_contig14191.3061.1|Name=mRNA_E-fasciculatus_F_contig14191.3061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp SHETDVVVIGSGVGGLSAAAMLSRHGDSVTVLESHYLPGGVAHAFDIEGYback to top mRNA from alignment at E-fasciculatus_F_contig14191:2665..3161+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14191.3061.1 ID=mRNA_E-fasciculatus_F_contig14191.3061.1|Name=mRNA_E-fasciculatus_F_contig14191.3061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=497bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14191:2665..3161+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14191:2665..3161+ >mRNA_E-fasciculatus_F_contig14191.3061.1 ID=mRNA_E-fasciculatus_F_contig14191.3061.1|Name=mRNA_E-fasciculatus_F_contig14191.3061.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14191:2665..3161+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |