mRNA_E-fasciculatus_F_contig1415.3041.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1415.3041.1 vs. uniprot
Match: D7FQG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG5_ECTSI) HSP 1 Score: 1160 bits (3001), Expect = 0.000e+0 Identity = 704/875 (80.46%), Postives = 722/875 (82.51%), Query Frame = 2
Query: 2 ARRSSEGGVADGGELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVENSSLQDALLAVTRSLGWESLRTCWLETCLAARSDHERHTLASEALRFVIANGGHVKAASFMLGVGGADANGVDSRLLSPLHLVAMFNRPDIARVLLMCGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDDASVAVG---------PAALYVLRGLVCLQCNLKLPRPERCGTCKLTFCKSCRGSHFCAGGXXXXXXXXXXXXXXX-----------RARLESTTLWELGSAIGDDWEELFNEGNANARGGVARGAGVEEDGWKPGGLRRSGPGTITSTEEIMEASVGSSCLSLSSSPVPWETMPSALLGTWERRPQTTVPKDRHRLFDNSAAFVRACFPAQQTWLQHHMEEEMGLSLGGTLSRHGWGGPFKDLGLDGEHFNPEIMQAASSTELHRHMSWVMAESGVPWEANDDAWCCPECFILFSLNVFRHHCRGCGQVYCSAHAPPTPVPPDDRPLKLCWSCVLEGAVPLPASLLEXXXXXXXXX--VFDENSILGMSPNTARGIAAEQELLSPTVASMNLDAATAXXXXXXXXXXXXXXYIAPPQPDPDCLSGQAGSERKQRGHRA---------KAGSVGGSIEGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLSALVSLIEVVASPTSPMRSXXXXXXXXXK-PDVHASGRPPQSPAKPPAVAAETRGDDAGDAPGVXXXXXXXENWRAGWSTPPPSGEGLAIEAQQQPSGGRGQEAESSPLRLRKEYDSGSESRXXXXXXXXXXXXGGFNSHSTAGSLAESVDDGYGANGNARGVVDEAALFEETPPAELGFPSERPWALGFGN 2530
A+RSSEGGVAD GELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVE+SSLQDALLAVTRSLGW+SLRTCWLETCLAARSDHERHTLAS+ALRFVIANGGHVKAASFMLGVGGADAN VDSRLLSPLHLVAMFNRPDIARVLLMCGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDD + G PA + L G RG+ GGXXXXXXXXXXXXXXX R RLES TLWELGSAIGDDWEELFNEGNANARGGVARG+GVEED WKPGGLRR GPGTITSTEEIMEASVG SCLS+SSSPVPWETMPS LLGTWERRPQTTVPKDRHRLFDNSAAFVRACFPAQ TWLQHHMEEEMGLSLGGTLSRHGWGGPFK LG+DGEHFNPEIMQAASST LHRHMSWVMAESGVPWEANDDAWCCPECFILFSLNVFRHHCRGCGQVYCSAH PPTPVP DDRPLKLCWSCVLEGAVPLPASL+EXXXXXXXXX VFDEN ILGMSP++ARGIAAEQELLSPTVA MNLDAATA YIAPPQ +PD L GQ GSE KAGS+GGSIEGG XXXXXXXXXXXXXXXXXXXXXX FLSALVSLIEVVASPTSPMRS XXXXXXXK PDV GRPPQSPAKP AVAAET +DAGDAPGV +NWRAGWST P SGEGLAIEAQQQPSGGRG+EAESSPLRLRKEYD XXXXXXXXXXXXGGFNSHST GSLAESVDDG GANGNA GV D AA FEETPP ELGFPSERPWALGFGN
Sbjct: 251 AKRSSEGGVADAGELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVEHSSLQDALLAVTRSLGWDSLRTCWLETCLAARSDHERHTLASQALRFVIANGGHVKAASFMLGVGGADANEVDSRLLSPLHLVAMFNRPDIARVLLMCGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDDGAALGGGPIRAAGSNPARAWELGG---------------------------RGAANVEGGXXXXXXXXXXXXXXXXXXXXXXXXXXRDRLESATLWELGSAIGDDWEELFNEGNANARGGVARGSGVEEDSWKPGGLRRPGPGTITSTEEIMEASVGPSCLSMSSSPVPWETMPSVLLGTWERRPQTTVPKDRHRLFDNSAAFVRACFPAQ-TWLQHHMEEEMGLSLGGTLSRHGWGGPFKGLGMDGEHFNPEIMQAASSTGLHRHMSWVMAESGVPWEANDDAWCCPECFILFSLNVFRHHCRGCGQVYCSAHTPPTPVPSDDRPLKLCWSCVLEGAVPLPASLVEXXXXXXXXXXXVFDENPILGMSPSSARGIAAEQELLSPTVAVMNLDAATAAAAAGAA-------YIAPPQHNPDYLRGQTGSEXXXXXXXXXXXXXXXXXKAGSIGGSIEGGX-----XXXXXXXXXXXXXXXXXXXXXXVGGSGFLSALVSLIEVVASPTSPMRSRGXXXXXXXKKPDV-VPGRPPQSPAKPLAVAAETGVEDAGDAPGVGKGGG--QNWRAGWSTLPASGEGLAIEAQQQPSGGRGEEAESSPLRLRKEYDXXXXXXXXXXXXXXXXXXGGFNSHSTGGSLAESVDDGGGANGNAHGVADGAASFEETPPPELGFPSERPWALGFGN 1082 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1415.3041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1415.3041.1 >prot_E-fasciculatus_F_contig1415.3041.1 ID=prot_E-fasciculatus_F_contig1415.3041.1|Name=mRNA_E-fasciculatus_F_contig1415.3041.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=733bp MLGVGGADANGVDSRLLSPLHLVAMFNRPDIARVLLMCGASPRLVGGVTRback to top mRNA from alignment at E-fasciculatus_F_contig1415:2..5122+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1415.3041.1 ID=mRNA_E-fasciculatus_F_contig1415.3041.1|Name=mRNA_E-fasciculatus_F_contig1415.3041.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5121bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1415:2..5122+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1415:2..5122+ >mRNA_E-fasciculatus_F_contig1415.3041.1 ID=mRNA_E-fasciculatus_F_contig1415.3041.1|Name=mRNA_E-fasciculatus_F_contig1415.3041.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1415:2..5122+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |