prot_E-fasciculatus_F_contig1412.3016.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1412.3016.1
Unique Nameprot_E-fasciculatus_F_contig1412.3016.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length272
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1412.3016.1 vs. uniprot
Match: D8LN77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN77_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 2.300e-77
Identity = 238/264 (90.15%), Postives = 246/264 (93.18%), Query Frame = 0 
Query:    4 GRGSSRTLFAVRVASTITSKPRGSSRIYARNRAAVERRPKVEVAGKTARRDEKEGAAGDLKSSLKTTLHRAGKKGDWRAALQTLDEMKLSPGLVDAMSYNIAITACGGRQLGKALGLLDEMEEEGVTPNIFIFNSAIKACGDADECEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGKEGSGRTLWSYLGQLKKK 267
            GR S R+LFAVRV S+ITSK R SSRIYA N+AAVERRPKV+VA KTARRDE+EG AGDLKSSLKTTLH+AGKK DWR ALQTLDE+KLSPGLVDAMSYNIAITACGGRQL KAL LL EMEEEGVTPNIFIFNSAIKACGDADE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGK+GSGR LW YLGQLKKK
Sbjct:   31 GRASLRSLFAVRVISSITSKSRESSRIYAWNKAAVERRPKVKVATKTARRDEEEGVAGDLKSSLKTTLHKAGKKRDWRVALQTLDEIKLSPGLVDAMSYNIAITACGGRQLEKALDLLGEMEEEGVTPNIFIFNSAIKACGDADEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGKQGSGRRLWGYLGQLKKK 294
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BLAST of mRNA_E-fasciculatus_F_contig1412.3016.1 vs. uniprot
Match: D8LG06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.100e-5
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:   67 LKTTLHRAGKKGDWRAALQTLDEMKLSPGLVDAMSYNIAITACGGR-QLGKALGLLDEM-EEEGVTPNIF 134
            L+  L  A   G WR AL  LDEMK   G+V A SY  AIT CG + Q  KAL LL E+ E+EGV+PN+F
Sbjct:  113 LQAALREAATTGKWREALGILDEMK-EGGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVF 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1412.3016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN77_ECTSI2.300e-7790.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LG06_ECTSI1.100e-552.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 111..270
e-value: 3.7E-46
score: 159.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 135..168
e-value: 1.2E-4
score: 20.1
coord: 107..133
e-value: 0.0023
score: 16.0
coord: 205..238
e-value: 5.4E-9
score: 33.7
coord: 169..202
e-value: 1.3E-7
score: 29.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 99..145
e-value: 5.6E-6
score: 26.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 166..214
e-value: 4.0E-12
score: 46.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 167..201
score: 11.389
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 237..271
score: 5.601
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 132..166
score: 9.701
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 98..131
score: 8.199
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 63..93
score: 5.152
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 202..236
score: 12.408
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 66..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1412contigE-fasciculatus_F_contig1412:988..1803 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1412.3016.1mRNA_E-fasciculatus_F_contig1412.3016.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1412 985..1957 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1412.3016.1 ID=prot_E-fasciculatus_F_contig1412.3016.1|Name=mRNA_E-fasciculatus_F_contig1412.3016.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=272bp
MFAGRGSSRTLFAVRVASTITSKPRGSSRIYARNRAAVERRPKVEVAGKT
ARRDEKEGAAGDLKSSLKTTLHRAGKKGDWRAALQTLDEMKLSPGLVDAM
SYNIAITACGGRQLGKALGLLDEMEEEGVTPNIFIFNSAIKACGDADECE
KALTLLDEVLGRGLSPNVITYNAAIGACAQCGRWQKALDLLGEMSERQVV
ADVTTYNAVIEAFAGGDQWEKALDLLSDMSERGVVPNARTRTLAISACGK
EGSGRTLWSYLGQLKKKQIHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf