mRNA_E-fasciculatus_F_contig1412.3016.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1412.3016.1
Unique NamemRNA_E-fasciculatus_F_contig1412.3016.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1412.3016.1 vs. uniprot
Match: D8LN77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN77_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 9.870e-77
Identity = 239/268 (89.18%), Postives = 248/268 (92.54%), Query Frame = 1 
Query:    1 TMFAGRGSSRTLFAVRVASTITSKPRGSSRIYARNRAAVERRPKVEVAGKTARRDEKEGAAGDLKSSLKTTLHRAGKKGDWRAALQTLDEMKLSPGLVDAMSYNIAITACGGRQLGKALGLLDEMEEEGVTPNIFIFNSAIKACGDADECEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGKEGSGRTLWSYLGQLKKK 804
            T+  GR S R+LFAVRV S+ITSK R SSRIYA N+AAVERRPKV+VA KTARRDE+EG AGDLKSSLKTTLH+AGKK DWR ALQTLDE+KLSPGLVDAMSYNIAITACGGRQL KAL LL EMEEEGVTPNIFIFNSAIKACGDADE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGK+GSGR LW YLGQLKKK
Sbjct:   27 TITTGRASLRSLFAVRVISSITSKSRESSRIYAWNKAAVERRPKVKVATKTARRDEEEGVAGDLKSSLKTTLHKAGKKRDWRVALQTLDEIKLSPGLVDAMSYNIAITACGGRQLEKALDLLGEMEEEGVTPNIFIFNSAIKACGDADEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAISACGKQGSGRRLWGYLGQLKKK 294
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1412.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN77_ECTSI9.870e-7789.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1412contigE-fasciculatus_F_contig1412:985..1957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.4
Seed ortholog evalue9.8e-64
Seed eggNOG ortholog2880.D8LN77
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-05_003820.1
Exons1
Model size973
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1412.3016.1prot_E-fasciculatus_F_contig1412.3016.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1412 988..1803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.3661819-UTR-E-fasciculatus_F_contig1412:984..9871622927903.3661819-UTR-E-fasciculatus_F_contig1412:984..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1412 985..987 +
1695995745.3136718-UTR-E-fasciculatus_F_contig1412:984..9871695995745.3136718-UTR-E-fasciculatus_F_contig1412:984..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1412 985..987 +
1622927903.393467-UTR-E-fasciculatus_F_contig1412:1803..19571622927903.393467-UTR-E-fasciculatus_F_contig1412:1803..1957Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1412 1804..1957 +
1695995745.3393276-UTR-E-fasciculatus_F_contig1412:1803..19571695995745.3393276-UTR-E-fasciculatus_F_contig1412:1803..1957Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1412 1804..1957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.382848-CDS-E-fasciculatus_F_contig1412:987..18031622927903.382848-CDS-E-fasciculatus_F_contig1412:987..1803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1412 988..1803 +
1695995745.3262699-CDS-E-fasciculatus_F_contig1412:987..18031695995745.3262699-CDS-E-fasciculatus_F_contig1412:987..1803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1412 988..1803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1412.3016.1

>prot_E-fasciculatus_F_contig1412.3016.1 ID=prot_E-fasciculatus_F_contig1412.3016.1|Name=mRNA_E-fasciculatus_F_contig1412.3016.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=272bp
MFAGRGSSRTLFAVRVASTITSKPRGSSRIYARNRAAVERRPKVEVAGKT
ARRDEKEGAAGDLKSSLKTTLHRAGKKGDWRAALQTLDEMKLSPGLVDAM
SYNIAITACGGRQLGKALGLLDEMEEEGVTPNIFIFNSAIKACGDADECE
KALTLLDEVLGRGLSPNVITYNAAIGACAQCGRWQKALDLLGEMSERQVV
ADVTTYNAVIEAFAGGDQWEKALDLLSDMSERGVVPNARTRTLAISACGK
EGSGRTLWSYLGQLKKKQIHR*
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mRNA from alignment at E-fasciculatus_F_contig1412:985..1957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1412.3016.1 ID=mRNA_E-fasciculatus_F_contig1412.3016.1|Name=mRNA_E-fasciculatus_F_contig1412.3016.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=973bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1412:985..1957+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCATGTTCGCAGGTCGCGGTTCTTCACGAACGTTGTTTGCTGTGCGTGT
GGCCTCCACCATCACTTCAAAACCGCGCGGCTCTTCTCGGATATACGCCC
GGAATCGAGCTGCGGTAGAGAGGCGACCGAAGGTAGAAGTGGCCGGCAAG
ACAGCTCGGAGAGATGAGAAAGAAGGGGCTGCGGGCGATTTGAAGTCCAG
TCTGAAAACTACGTTGCACAGAGCTGGGAAGAAGGGGGATTGGAGAGCAG
CACTGCAAACGCTCGATGAAATGAAACTGTCTCCAGGACTTGTCGACGCG
ATGTCGTACAACATAGCCATCACGGCTTGTGGAGGACGACAGCTGGGGAA
GGCTTTGGGTCTTTTGGATGAGATGGAAGAGGAGGGGGTGACTCCCAACA
TATTTATTTTCAATTCGGCTATAAAGGCGTGCGGCGATGCCGACGAATGC
GAAAAGGCTCTTACTCTTCTGGATGAGGTTTTGGGACGGGGATTGTCCCC
TAACGTGATCACCTACAACGCAGCTATCGGTGCGTGTGCACAATGTGGTC
GGTGGCAGAAGGCCCTGGACCTTCTAGGCGAAATGTCAGAGAGGCAAGTG
GTCGCTGATGTCACAACCTACAACGCCGTCATCGAAGCGTTTGCGGGGGG
GGATCAATGGGAGAAGGCTCTGGACCTCCTGAGCGACATGTCGGAGCGGG
GAGTGGTCCCCAATGCTAGAACCCGCACTTTAGCCATATCTGCTTGTGGC
AAAGAGGGGAGTGGAAGAACGCTTTGGAGTTATTTGGGTCAACTGAAGAA
AAAGCAAATTCATCGTTGAAAGGTGCATGTGTGATGGACAGCGTCAGCTC
TAGATGTTGTTTGTAGCACGCGGTAGCCGCCTGCCTCATCTTGATTCCTC
GCCGATTATCCGCGTTCGACAGCTGGGAAAACTCGGTTTGTGAGATCGCC
CCCGTGTGACAACCACAACGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1412:985..1957+

>mRNA_E-fasciculatus_F_contig1412.3016.1 ID=mRNA_E-fasciculatus_F_contig1412.3016.1|Name=mRNA_E-fasciculatus_F_contig1412.3016.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1412:985..1957+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGCAGGTCGCGGTTCTTCACGAACGTTGTTTGCTGTGCGTGTGGC
CTCCACCATCACTTCAAAACCGCGCGGCTCTTCTCGGATATACGCCCGGA
ATCGAGCTGCGGTAGAGAGGCGACCGAAGGTAGAAGTGGCCGGCAAGACA
GCTCGGAGAGATGAGAAAGAAGGGGCTGCGGGCGATTTGAAGTCCAGTCT
GAAAACTACGTTGCACAGAGCTGGGAAGAAGGGGGATTGGAGAGCAGCAC
TGCAAACGCTCGATGAAATGAAACTGTCTCCAGGACTTGTCGACGCGATG
TCGTACAACATAGCCATCACGGCTTGTGGAGGACGACAGCTGGGGAAGGC
TTTGGGTCTTTTGGATGAGATGGAAGAGGAGGGGGTGACTCCCAACATAT
TTATTTTCAATTCGGCTATAAAGGCGTGCGGCGATGCCGACGAATGCGAA
AAGGCTCTTACTCTTCTGGATGAGGTTTTGGGACGGGGATTGTCCCCTAA
CGTGATCACCTACAACGCAGCTATCGGTGCGTGTGCACAATGTGGTCGGT
GGCAGAAGGCCCTGGACCTTCTAGGCGAAATGTCAGAGAGGCAAGTGGTC
GCTGATGTCACAACCTACAACGCCGTCATCGAAGCGTTTGCGGGGGGGGA
TCAATGGGAGAAGGCTCTGGACCTCCTGAGCGACATGTCGGAGCGGGGAG
TGGTCCCCAATGCTAGAACCCGCACTTTAGCCATATCTGCTTGTGGCAAA
GAGGGGAGTGGAAGAACGCTTTGGAGTTATTTGGGTCAACTGAAGAAAAA
GCAAATTCATCGTTGAATGTTCGCAGGTCGCGGTTCTTCACGAACGTTGT
TTGCTGTGCGTGTGGCCTCCACCATCACTTCAAAACCGCGCGGCTCTTCT
CGGATATACGCCCGGAATCGAGCTGCGGTAGAGAGGCGACCGAAGGTAGA
AGTGGCCGGCAAGACAGCTCGGAGAGATGAGAAAGAAGGGGCTGCGGGCG
ATTTGAAGTCCAGTCTGAAAACTACGTTGCACAGAGCTGGGAAGAAGGGG
GATTGGAGAGCAGCACTGCAAACGCTCGATGAAATGAAACTGTCTCCAGG
ACTTGTCGACGCGATGTCGTACAACATAGCCATCACGGCTTGTGGAGGAC
GACAGCTGGGGAAGGCTTTGGGTCTTTTGGATGAGATGGAAGAGGAGGGG
GTGACTCCCAACATATTTATTTTCAATTCGGCTATAAAGGCGTGCGGCGA
TGCCGACGAATGCGAAAAGGCTCTTACTCTTCTGGATGAGGTTTTGGGAC
GGGGATTGTCCCCTAACGTGATCACCTACAACGCAGCTATCGGTGCGTGT
GCACAATGTGGTCGGTGGCAGAAGGCCCTGGACCTTCTAGGCGAAATGTC
AGAGAGGCAAGTGGTCGCTGATGTCACAACCTACAACGCCGTCATCGAAG
CGTTTGCGGGGGGGGATCAATGGGAGAAGGCTCTGGACCTCCTGAGCGAC
ATGTCGGAGCGGGGAGTGGTCCCCAATGCTAGAACCCGCACTTTAGCCAT
ATCTGCTTGTGGCAAAGAGGGGAGTGGAAGAACGCTTTGGAGTTATTTGG
GTCAACTGAAGAAAAAGCAAATTCATCGTTGA
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