mRNA_E-fasciculatus_F_contig14080.2982.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14080.2982.1
Unique NamemRNA_E-fasciculatus_F_contig14080.2982.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: D7G275_ECTSI (Phosphatidate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G275_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.140e-27
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1
Query:   25 HTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKGAAA--EGGVALPRGPVLCPPEVLF 192
            H DVSTLFSKISGNGYKILYLTNRPLPDWHAK+GAAA  EGGVALPRGPVLCPPEVLF
Sbjct: 1194 HKDVSTLFSKISGNGYKILYLTNRPLPDWHAKRGAAAAAEGGVALPRGPVLCPPEVLF 1251          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: A0A6H5JPH1_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.140e-27
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1
Query:   25 HTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKGAAA--EGGVALPRGPVLCPPEVLF 192
            H DVSTLFSKISGNGYKILYLTNRPLPDWHAK+GAAA  EGGVALPRGPVLCPPEVLF
Sbjct: 1454 HKDVSTLFSKISGNGYKILYLTNRPLPDWHAKRGAAAAAEGGVALPRGPVLCPPEVLF 1511          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: T0MFM9_9MICR (Smp2 protein n=1 Tax=Nosema apis BRL 01 TaxID=1037528 RepID=T0MFM9_9MICR)

HSP 1 Score: 50.4 bits (119), Expect = 1.360e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1
Query:   25 HTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKGAAA---EGGVALPRGPVLCPPEVLF 192
            H  +++LFSK+  +GYKI+YLT RPL    + K       + G  LP GPV+  P+ LF
Sbjct:  400 HVGIASLFSKLYRSGYKIMYLTARPLQQSFSTKNYLTNIDQNGAKLPEGPVILSPDGLF 458          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: R0MRQ2_NOSB1 (Nuclear elongation and deformation protein 1 n=3 Tax=Opisthokonta TaxID=33154 RepID=R0MRQ2_NOSB1)

HSP 1 Score: 50.4 bits (119), Expect = 1.360e-5
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1
Query:   25 HTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKG---AAAEGGVALPRGPVLCPPEVLF 192
            H  +++LF+KI  +GYKILYLT RPL    A K       + G  LP GPVL  P+ +F
Sbjct:  415 HGGIASLFTKIKKHGYKILYLTARPLQQSFATKNYLRRVNQDGYNLPEGPVLLSPDGVF 473          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: A0A2V3III9_9FLOR (Phosphatidate phosphatase PAH2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3III9_9FLOR)

HSP 1 Score: 49.7 bits (117), Expect = 2.520e-5
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 1
Query:    1 PTIDRCMQHTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKG---AAAEGGVALPRGPVLCPPEVL 189
            P + R      V+ L+S+I  NGYKILYLT RP+      +    +  +GG  LP GPVL  P  L
Sbjct:  238 PAVGRDWSQDGVAGLYSQIEKNGYKILYLTARPIGQASQTRAFLHSVTQGGAKLPNGPVLMSPNRL 303          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: A0A0B2UMS3_9MICR (Smp2-like plasmid maintenance protein n=1 Tax=Ordospora colligata OC4 TaxID=1354746 RepID=A0A0B2UMS3_9MICR)

HSP 1 Score: 49.3 bits (116), Expect = 3.480e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   25 HTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKG---AAAEGGVALPRGPVLCPPEVLF 192
            H  V++L++KI  NGYKI+YLT RPL    + K    +  + G  LP GPV+  P+ +F
Sbjct:  418 HNGVASLYTKIVKNGYKIVYLTARPLEQSSSTKSYLKSICQDGCRLPDGPVILSPDGVF 476          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: A0A7R8W0V4_9CRUS (Phosphatidate phosphatase n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W0V4_9CRUS)

HSP 1 Score: 49.3 bits (116), Expect = 3.530e-5
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 PTIDRCMQHTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKG---AAAEGGVALPRGPVLCPPEVLF 192
            P I R    +DV+ LF+KIS NGY+ LYL+ R +   H  +    +  +G V LP GP+L  P  L 
Sbjct:  871 PIIGRDWSQSDVAQLFTKISRNGYRFLYLSARAIGQAHITREYLRSIRQGDVCLPNGPLLLNPASLI 937          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: A0A4W4FSU9_ELEEL (Phosphatidate phosphatase n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4FSU9_ELEEL)

HSP 1 Score: 48.9 bits (115), Expect = 4.780e-5
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 PTIDRCMQHTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKGA---AAEGGVALPRGPVLCPPEVLF 192
            PT+ +   H  +++LF K+S NGYK +Y + R +   +  +G      E G  LP+GPVL  P  LF
Sbjct:  478 PTLGKDWTHQGITSLFHKVSQNGYKFMYCSARAIGMANMTRGYLHWVNESGTELPQGPVLLSPSSLF 544          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: M1K8X5_ENCCN (LNS2 domain-containing protein n=1 Tax=Encephalitozoon cuniculi TaxID=6035 RepID=M1K8X5_ENCCN)

HSP 1 Score: 48.5 bits (114), Expect = 6.520e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   25 HTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKGA---AAEGGVALPRGPVLCPPEVLF 192
            H  V++L++KI+ NGYKI+YLT RPL    + K       + G  LP GPV+  P+ +F
Sbjct:  416 HHGVASLYTKIARNGYKIVYLTARPLGQSFSTKSYLKNVCQDGYKLPDGPVILSPDGVF 474          
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Match: A0A0S4J9E4_BODSA (Lipin, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J9E4_BODSA)

HSP 1 Score: 48.5 bits (114), Expect = 6.570e-5
Identity = 23/68 (33.82%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    1 PTIDRCMQHTDVSTLFSKISGNGYKILYLTNRPLPDWHAKK----GAAAEGGVALPRGPVLCPPEVLF 192
            P I +   H  + +L++K++ NGY+ +YLT R +      +        +GG+ LPRGPVL  P+  F
Sbjct:  429 PMIGKDWTHAGICSLYTKVAKNGYEFVYLTARSMSQQEQTRKFLWSIEQDGGMTLPRGPVLTAPDRFF 496          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14080.2982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G275_ECTSI1.140e-2793.10Phosphatidate phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JPH1_9PHAE1.140e-2793.10LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
T0MFM9_9MICR1.360e-542.37Smp2 protein n=1 Tax=Nosema apis BRL 01 TaxID=1037... [more]
R0MRQ2_NOSB11.360e-545.76Nuclear elongation and deformation protein 1 n=3 T... [more]
A0A2V3III9_9FLOR2.520e-540.91Phosphatidate phosphatase PAH2 n=1 Tax=Gracilariop... [more]
A0A0B2UMS3_9MICR3.480e-542.37Smp2-like plasmid maintenance protein n=1 Tax=Ordo... [more]
A0A7R8W0V4_9CRUS3.530e-540.30Phosphatidate phosphatase n=1 Tax=Cyprideis torosa... [more]
A0A4W4FSU9_ELEEL4.780e-537.31Phosphatidate phosphatase n=1 Tax=Electrophorus el... [more]
M1K8X5_ENCCN6.520e-542.37LNS2 domain-containing protein n=1 Tax=Encephalito... [more]
A0A0S4J9E4_BODSA6.570e-533.82Lipin, putative n=1 Tax=Bodo saltans TaxID=75058 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14080contigE-fasciculatus_F_contig14080:424..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4e-23
Seed eggNOG ortholog2880.D7G275
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size192
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927898.2159019-CDS-E-fasciculatus_F_contig14080:423..5971622927898.2159019-CDS-E-fasciculatus_F_contig14080:423..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14080 424..597 -
1695995743.5603743-CDS-E-fasciculatus_F_contig14080:423..5971695995743.5603743-CDS-E-fasciculatus_F_contig14080:423..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14080 424..597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927898.2317243-UTR-E-fasciculatus_F_contig14080:597..6151622927898.2317243-UTR-E-fasciculatus_F_contig14080:597..615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14080 598..615 -
1695995743.573959-UTR-E-fasciculatus_F_contig14080:597..6151695995743.573959-UTR-E-fasciculatus_F_contig14080:597..615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14080 598..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14080.2982.1prot_E-fasciculatus_F_contig14080.2982.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14080 424..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14080.2982.1

>prot_E-fasciculatus_F_contig14080.2982.1 ID=prot_E-fasciculatus_F_contig14080.2982.1|Name=mRNA_E-fasciculatus_F_contig14080.2982.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
MQHTDVSTLFSKISGNGYKILYLTNRPLPDWHAKKGAAAEGGVALPRGPV
LCPPEVLF
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mRNA from alignment at E-fasciculatus_F_contig14080:424..615-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14080.2982.1 ID=mRNA_E-fasciculatus_F_contig14080.2982.1|Name=mRNA_E-fasciculatus_F_contig14080.2982.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14080:424..615- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCACCATCGATCGATGCATGCAACACACAGACGTGTCGACGCTCTTCTC CAAGATCTCCGGGAACGGCTACAAGATCCTCTACCTCACCAACCGACCGC TGCCAGACTGGCACGCCAAGAAGGGGGCGGCGGCCGAGGGAGGCGTCGCC CTCCCCAGGGGACCGGTACTGTGCCCCCCGGAGGTGCTGTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14080:424..615-

>mRNA_E-fasciculatus_F_contig14080.2982.1 ID=mRNA_E-fasciculatus_F_contig14080.2982.1|Name=mRNA_E-fasciculatus_F_contig14080.2982.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14080:424..615- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAACACACAGACGTGTCGACGCTCTTCTCCAAGATCTCCGGGAACGG
CTACAAGATCCTCTACCTCACCAACCGACCGCTGCCAGACTGGCACGCCA
AGAAGGGGGCGGCGGCCGAGGGAGGCGTCGCCCTCCCCAGGGGACCGGTA
CTGTGCCCCCCGGAGGTGCTGTTCATGCAACACACAGACGTGTCGACGCT
CTTCTCCAAGATCTCCGGGAACGGCTACAAGATCCTCTACCTCACCAACC
GACCGCTGCCAGACTGGCACGCCAAGAAGGGGGCGGCGGCCGAGGGAGGC
GTCGCCCTCCCCAGGGGACCGGTACTGTGCCCCCCGGAGGTGCTGTTC
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