mRNA_E-fasciculatus_F_contig14042.2964.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14042.2964.1
Unique NamemRNA_E-fasciculatus_F_contig14042.2964.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot
Match: D8LDH8_ECTSI (Rab11C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH8_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 4.130e-34
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:  134 MVRVAEQMSANLMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGGGCPSA-VGMQFATRTLRYGDSLSVRAQ 373
            MVRV +QMSA+ MAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK  G  CPSA VGMQF TRTLRY DSLSVRAQ
Sbjct:    1 MVRVVDQMSASCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKKSG--CPSAAVGMQFGTRTLRYSDSLSVRAQ 79
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BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot
Match: A0A6H5KEC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC4_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.710e-32
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:  134 MVRVAEQMSANLMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGGGCPSA-VGMQFATRTLRYGDSLSVRAQ 373
            MVRV EQMSAN MAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK GG   PSA VGMQF TRTLRY DSLSVRAQ
Sbjct:    1 MVRVVEQMSANCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKKGGR--PSAAVGMQFGTRTLRYSDSLSVRAQ 79
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDH8_ECTSI4.130e-3486.42Rab11C, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KEC4_9PHAE3.710e-3288.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14042contigE-fasciculatus_F_contig14042:1483..3243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue5.8e-28
Seed eggNOG ortholog2880.D8LDH8
KEGG koko:K07976
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab11C, RAB family GTPase
Ec32 orthologEc-15_000550.1
Exons2
Model size753
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14042.2964.1prot_E-fasciculatus_F_contig14042.2964.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14042 1782..3110 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.0919528-UTR-E-fasciculatus_F_contig14042:1482..17811622927896.0919528-UTR-E-fasciculatus_F_contig14042:1482..1781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14042 1483..1781 -
1695995742.6240008-UTR-E-fasciculatus_F_contig14042:1482..17811695995742.6240008-UTR-E-fasciculatus_F_contig14042:1482..1781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14042 1483..1781 -
1622927896.1501-UTR-E-fasciculatus_F_contig14042:3110..32431622927896.1501-UTR-E-fasciculatus_F_contig14042:3110..3243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14042 3111..3243 -
1695995742.6548054-UTR-E-fasciculatus_F_contig14042:3110..32431695995742.6548054-UTR-E-fasciculatus_F_contig14042:3110..3243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14042 3111..3243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.113133-CDS-E-fasciculatus_F_contig14042:1781..18621622927896.113133-CDS-E-fasciculatus_F_contig14042:1781..1862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14042 1782..1862 -
1695995742.636448-CDS-E-fasciculatus_F_contig14042:1781..18621695995742.636448-CDS-E-fasciculatus_F_contig14042:1781..1862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14042 1782..1862 -
1622927896.134799-CDS-E-fasciculatus_F_contig14042:2870..31101622927896.134799-CDS-E-fasciculatus_F_contig14042:2870..3110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14042 2871..3110 -
1695995742.6468575-CDS-E-fasciculatus_F_contig14042:2870..31101695995742.6468575-CDS-E-fasciculatus_F_contig14042:2870..3110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14042 2871..3110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14042.2964.1

>prot_E-fasciculatus_F_contig14042.2964.1 ID=prot_E-fasciculatus_F_contig14042.2964.1|Name=mRNA_E-fasciculatus_F_contig14042.2964.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MVRVAEQMSANLMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK
NGGGGCPSAVGMQFATRTLRYGDSLSVRAQAGLGGASCCRCMHPNHTNRD
GSISEI*
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mRNA from alignment at E-fasciculatus_F_contig14042:1483..3243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14042.2964.1 ID=mRNA_E-fasciculatus_F_contig14042.2964.1|Name=mRNA_E-fasciculatus_F_contig14042.2964.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1761bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14042:1483..3243- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTCGCGCTGGCGTGTTATTACCTCGCCGACTGCTGCTTCTGTGTGGCG
GTGTGAAGAAAAAGCGAAAGTGGTCTCCCTCTCTCCTTGGTACGCGGGAA
GAAGCTAGGGAGAAACAACACAAGCCGGGGGCGATGGTGCGCGTCGCCGA
GCAGATGTCGGCAAACCTCATGGCGGGGTGCTCCTACTCTAGCTCTGGAG
ACAGGGTCTACACCCTGAAGTTCGTGTTGGTTGGGAGCCGGGGGGTGGGG
AAGACGCGGCTCGCGTCCCTTTTCCACAGGAAGAACGGCGGTGGAGGATG
CCCTTCGGCTGTTGGGATGCAGTTTGCGACTCGGACGCTGCGGTATGGTG
ACAGCTTGAGCGTCCGCGCACAGGTATGCTCCTTTTCGTGCAAGTTGCGT
TTGTTAGTTGTTTGCTTTCGCCCGCCCCTGCTGCGGAATCATACGGACAG
CTGCATTCCGAGAGCACTACTGCTGTAGGAGTCACTGGCGTCCACTGTAG
AGTTTGTCCTCCCTCTCTTGTCTTGTTCCTTTCGTGTGTGCCATGCGAAG
GTTTGTAGGAGGTGGCTTGTGTTGAATTTTTTTTTTGCGCACGTCTTCGT
GGTTGTGGAGGTTTTTGAAATGCAGGACAGCAGTAGCAGAGATGGGATGG
GTTTCAGCGTACATGACATCCGAGGAGAGATTAAAGGAATCGGCAGCTGT
TTTGCGTGCACGATCTAGGCGTGCTTGGCAACACTTCCCTCCTGCCCGGC
TCCCTCACCAAGCCCGTCGTGCTCTCAAAGATCCGCAAGCCGGAGTAAAT
AGGGGGCATATGCCTGACGCATGATGGCTGGCAGCTACTACAAATCGGTC
GCTCTTCCTCCACTAAAGATCAAACGGCCGTTTGTTGGTGGAAATTGGTC
CGTCACACATACCACCCACCCCTTTATCCGTATGCTACACCCGCCTTTTC
CGGAGACACACTCGATACATATGGTAGTCGTCTACTCTCGGCCCACGCGC
ACAAGGTATTCTGCCGCTATGCGTGCGTCCCCGAAGCTCAAAAGCAACCA
GCCCTCAAAGCACCCGCCCTAGACACGCGCGCCAGTGGGAAACAGCCAGC
CTTGCACCAAACCACCGTTCCGAAAAAGTGAAAAAGTGCTCGCAAGCCTC
TCGCATGTTTCGCCGCGGTGTTGTGGGGCGCGCTCTCTTATTTTTTCCGA
TTTTTTTTTTCAAGAATTCGGAGATGAATGCTGAGGACCACGCGCTGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAAACGTTGGACGTCCGCCC
TTCCCGGTAGGCCCGCGCCGCGTACGTGTTTTCATGCCGATCGTTAAGCC
TGTGCCTCCCTTTATTTCCTGCGCGGGCCAGGCGGGTTTGGGTGGAGCCA
GCTGCTGCCGCTGCATGCACCCAAATCACACAAACAGGGATGGATCTATC
TCAGAGATCTAGAGATCCGTGGATACCGCCTGCAACATTCCTTGGGGAGG
TTTGGTACCCAGCCAGAGGACTCCTGGTGCGGTCACCTGCCAGCGGGCGG
CCCTTTCGTGCCCACGAAGGAACAGGCAGCAACGGAAAAGAAAACACCGA
TAGATAGGATACCTGCCCAGACGAGACGTCGCTCTCTCTCCCTGGGCTGC
TGTAGAAATTTAAATTTCGGCTATGCATATGTATCTACGTATGCAGTATG
TAGCTGCATTGTTGAAGACCTGTCCGTACAAGCTGGGCGGATGGATGGTG
CCGTGTGGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14042:1483..3243-

>mRNA_E-fasciculatus_F_contig14042.2964.1 ID=mRNA_E-fasciculatus_F_contig14042.2964.1|Name=mRNA_E-fasciculatus_F_contig14042.2964.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14042:1483..3243- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCGCGTCGCCGAGCAGATGTCGGCAAACCTCATGGCGGGGTGCTC
CTACTCTAGCTCTGGAGACAGGGTCTACACCCTGAAGTTCGTGTTGGTTG
GGAGCCGGGGGGTGGGGAAGACGCGGCTCGCGTCCCTTTTCCACAGGAAG
AACGGCGGTGGAGGATGCCCTTCGGCTGTTGGGATGCAGTTTGCGACTCG
GACGCTGCGGTATGGTGACAGCTTGAGCGTCCGCGCACAGATGGTGCGCG
TCGCCGAGCAGATGTCGGCAAACCTCATGGCGGGGTGCTCCTACTCTAGC
TCTGGAGACAGGGTCTACACCCTGAAGTTCGTGTTGGTTGGGAGCCGGGG
GGTGGGGAAGACGCGGCTCGCGTCCCTTTTCCACAGGAAGAACGGCGGTG
GAGGATGCCCTTCGGCTGTTGGGATGCAGTTTGCGACTCGGACGCTGCGG
TATGGTGACAGCTTGAGCGTCCGCGCACAGGCGGGTTTGGGTGGAGCCAG
CTGCTGCCGCTGCATGCACCCAAATCACACAAACAGGGATGGATCTATCT
CAGAGATCTAGGCGGGTTTGGGTGGAGCCAGCTGCTGCCGCTGCATGCAC
CCAAATCACACAAACAGGGATGGATCTATCTCAGAGATCTAG
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