prot_E-fasciculatus_F_contig14042.2964.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-fasciculatus_F_contig14042.2964.1
Unique Name	prot_E-fasciculatus_F_contig14042.2964.1
Type	polypeptide
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length	107

Homology

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BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot
Match: D8LDH8_ECTSI (Rab11C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH8_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.350e-36
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0

Query:    1 MVRVAEQMSANLMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGGGCPSA-VGMQFATRTLRYGDSLSVRAQ 80
            MVRV +QMSA+ MAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK  G  CPSA VGMQF TRTLRY DSLSVRAQ
Sbjct:    1 MVRVVDQMSASCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKKSG--CPSAAVGMQFGTRTLRYSDSLSVRAQ 79

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BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot
Match: A0A6H5KEC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.760e-34
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0

Query:    1 MVRVAEQMSANLMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGGGCPSA-VGMQFATRTLRYGDSLSVRAQ 80
            MVRV EQMSAN MAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK GG   PSA VGMQF TRTLRY DSLSVRAQ
Sbjct:    1 MVRVVEQMSANCMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKKGGR--PSAAVGMQFGTRTLRYSDSLSVRAQ 79

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BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot
Match: A0A8K1C6N2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6N2_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 3.330e-5
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0

Query:   19 SSSGDRVYTLKFVLVGSRGVGKTRLASLFHRKNGGGGCPSAVGMQFATRTLRYGD 73
            S+SGD  YTLK VL+G  GVGK+ L S F +        S VG +FAT+T+R G+
Sbjct:   72 SASGDPEYTLKIVLIGDSGVGKSNLISRFTKNKYQPKHVSTVGFEFATKTIRVGE 126

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig14042.2964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LDH8_ECTSI	4.350e-36	86.42	Rab11C, RAB family GTPase n=1 Tax=Ectocarpus silic...	[more]
A0A6H5KEC4_9PHAE	3.760e-34	88.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A8K1C6N2_PYTOL	3.330e-5	49.09	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.300		coord: 19..86 e-value: 3.2E-5 score: 25.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 26..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig14042	contig	E-fasciculatus_F_contig14042:1782..3110 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig14042.2964.1	mRNA_E-fasciculatus_F_contig14042.2964.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	mRNA	E-fasciculatus_F_contig14042 1483..3243 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-fasciculatus_F_contig14042.2964.1 ID=prot_E-fasciculatus_F_contig14042.2964.1|Name=mRNA_E-fasciculatus_F_contig14042.2964.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MVRVAEQMSANLMAGCSYSSSGDRVYTLKFVLVGSRGVGKTRLASLFHRK
NGGGGCPSAVGMQFATRTLRYGDSLSVRAQAGLGGASCCRCMHPNHTNRD
GSISEI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase