mRNA_E-fasciculatus_F_contig14030.2958.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14030.2958.1
Unique NamemRNA_E-fasciculatus_F_contig14030.2958.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: D7FSF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF0_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 6.290e-32
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWANDK 189
            AQQLDDMISEAEQVATELYGE+QSPQDMQDRAWKD TVSVFDLENMEEDGK+RGE+MPWANDK
Sbjct:  258 AQQLDDMISEAEQVATELYGESQSPQDMQDRAWKDATVSVFDLENMEEDGKLRGEDMPWANDK 320          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A836CLR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.390e-17
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWANDK 189
            A ++D +IS AE+VAT LYGE+ SP+D QDRAW++   SV+DLE +E D  +RGEEMPWANDK
Sbjct:  257 ADKVDVIISTAEKVATALYGESMSPKDQQDRAWREHGASVWDLEKLENDAMLRGEEMPWANDK 319          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A7S2HQV3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQV3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.090e-12
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   22 ISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWAND 186
            ++EAEQV+T +YGE+ + ++ QDR WKD T+S++DLE +E+  +++GE+MPW  D
Sbjct:  463 VAEAEQVSTSIYGESMTAEEQQDRMWKDGTISIWDLETLEQQAEIQGEQMPWHQD 517          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A7S2VDW2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDW2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWAN 183
            A ++  + SEAE VAT +YG+  S Q+ QDRAWK+ T S+FDLE ME + +  GE+ PWAN
Sbjct:  437 ASRIKKLASEAEVVATRIYGKPMSLQEQQDRAWKEQTTSIFDLERMEIEAERMGEQAPWAN 497          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A448Z1Y6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1Y6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.640e-11
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWANDK 189
            A ++  + SEAE VAT +YG+  S +D QDR WK+ T S+F+LE ME + +  GE+ PWA+DK
Sbjct:  444 ASRIKQIASEAEVVATRIYGQGMSLRDQQDRMWKEQTTSIFELEQMELEAEANGEKAPWASDK 506          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A7R9ZKR3_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKR3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.700e-11
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWAN 183
            A ++  + SEAE VAT +YG+  S ++ QDR W+D T S+FDLE ME + + RGE  PW N
Sbjct:  141 ASRIKQIASEAEVVATRIYGQGMSLREQQDRMWEDETTSIFDLEKMELEAEARGENAPWTN 201          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: K0TLD5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLD5_THAOC)

HSP 1 Score: 65.5 bits (158), Expect = 6.770e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    7 QLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWAND 186
            Q+  + SEAE VAT +YG+  + ++ QDRAWK+ T S+FDLE +E + + RGE  PWA D
Sbjct:  406 QIKQIASEAEVVATRIYGKGMTQREQQDRAWKEQTTSIFDLETLEIEAERRGETAPWATD 465          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A7S3V6E7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6E7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.790e-11
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWAND 186
            A ++  + +EAE VAT +YG+  + ++ QDRAWK+ T S+FDLE +E D + RGE  PWAN+
Sbjct:  439 ASRIKQIANEAEVVATRIYGKGMTLREQQDRAWKEQTTSIFDLETLEIDAERRGETAPWANE 500          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A1Z5JLU1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLU1_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 2.370e-10
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWAN 183
            A ++  + SEAE VAT +YG+  S ++ QDR WKD T S+FDLE ME + +  GE  PW+N
Sbjct:  435 ASRIKKLASEAEVVATRIYGQGMSVREYQDRVWKDQTTSIFDLERMEIEAERNGEVAPWSN 495          
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Match: A0A6U1M7L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M7L3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.980e-10
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 AQQLDDMISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEEMPWAND 186
            A +L  +  EAE VAT +YGE+ + ++ QD+ W + T+SVFDLE +E   + +GE MPW ND
Sbjct:  341 ADRLRKITDEAEGVATSIYGESMTAREQQDKMWNEGTISVFDLEKIENAAEAQGEAMPWKND 402          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14030.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FSF0_ECTSI6.290e-3293.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLR4_9STRA5.390e-1761.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HQV3_9STRA4.090e-1249.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2VDW2_9STRA1.040e-1152.46Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A448Z1Y6_9STRA3.640e-1149.21Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9ZKR3_9STRA6.700e-1149.18Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
K0TLD5_THAOC6.770e-1150.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3V6E7_9STRA6.790e-1148.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5JLU1_FISSO2.370e-1049.18Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6U1M7L3_9STRA5.980e-1046.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14030contigE-fasciculatus_F_contig14030:2803..3292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3.4e-22
Seed eggNOG ortholog2880.D7FSF0
EggNOG OGs2AUPK@1,2RZUJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size192
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14030.2958.1prot_E-fasciculatus_F_contig14030.2958.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14030 2803..3274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.4073637-CDS-E-fasciculatus_F_contig14030:2802..29071622927895.4073637-CDS-E-fasciculatus_F_contig14030:2802..2907Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14030 2803..2907 -
1695995742.344216-CDS-E-fasciculatus_F_contig14030:2802..29071695995742.344216-CDS-E-fasciculatus_F_contig14030:2802..2907Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14030 2803..2907 -
1622927895.4265647-CDS-E-fasciculatus_F_contig14030:3205..32741622927895.4265647-CDS-E-fasciculatus_F_contig14030:3205..3274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14030 3206..3274 -
1695995742.3610828-CDS-E-fasciculatus_F_contig14030:3205..32741695995742.3610828-CDS-E-fasciculatus_F_contig14030:3205..3274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14030 3206..3274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.4411945-UTR-E-fasciculatus_F_contig14030:3274..32921622927895.4411945-UTR-E-fasciculatus_F_contig14030:3274..3292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14030 3275..3292 -
1695995742.3695962-UTR-E-fasciculatus_F_contig14030:3274..32921695995742.3695962-UTR-E-fasciculatus_F_contig14030:3274..3292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14030 3275..3292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14030.2958.1

>prot_E-fasciculatus_F_contig14030.2958.1 ID=prot_E-fasciculatus_F_contig14030.2958.1|Name=mRNA_E-fasciculatus_F_contig14030.2958.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
MISEAEQVATELYGETQSPQDMQDRAWKDTTVSVFDLENMEEDGKMRGEE
MPWANDK*
back to top

mRNA from alignment at E-fasciculatus_F_contig14030:2803..3292-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14030.2958.1 ID=mRNA_E-fasciculatus_F_contig14030.2958.1|Name=mRNA_E-fasciculatus_F_contig14030.2958.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=490bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14030:2803..3292- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCAGCAGCTTGACGACATGATCTCGGAGGCCGAGCAGGTGGCTACCGA GCTATACGGCGAGACGCAGAGCCCGCAGGACATGCAGGTACGTCGACACT CGATTGTTGTTATTGTTGTGTGTTTCCCCTGTTGGTCACGCGTGCTTATC GTCGCTGCTGTTCTGTTGCTGCTGCTACCACCCATGTTGCTGTTGCTGTT TGTCTCTGTTGTTGCTGCTATGACTCATGTCGTTATCGTTGCTGTTGTCG ACGTCGTCGTCGTCGTCGTCGTTGATTCTTTTGTTCATGGAGTTGTCGTC ATGGTGGTTGTCGTGTTGCTATCGCTCATGTCGTTGATGCTGATGTTGTA CTTTTCTGCCCATCACCACCATGCCGCTGTGCTAGGACCGTGCGTGGAAG GACACTACGGTCTCCGTGTTCGACCTCGAGAACATGGAGGAAGACGGCAA GATGCGGGGGGAAGAGATGCCCTGGGCAAACGACAAGTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14030:2803..3292-

>mRNA_E-fasciculatus_F_contig14030.2958.1 ID=mRNA_E-fasciculatus_F_contig14030.2958.1|Name=mRNA_E-fasciculatus_F_contig14030.2958.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14030:2803..3292- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCTCGGAGGCCGAGCAGGTGGCTACCGAGCTATACGGCGAGACGCA
GAGCCCGCAGGACATGCAGATGATCTCGGAGGCCGAGCAGGTGGCTACCG
AGCTATACGGCGAGACGCAGAGCCCGCAGGACATGCAGGACCGTGCGTGG
AAGGACACTACGGTCTCCGTGTTCGACCTCGAGAACATGGAGGAAGACGG
CAAGATGCGGGGGGAAGAGATGCCCTGGGCAAACGACAAGTAAGACCGTG
CGTGGAAGGACACTACGGTCTCCGTGTTCGACCTCGAGAACATGGAGGAA
GACGGCAAGATGCGGGGGGAAGAGATGCCCTGGGCAAACGACAAGTAA
back to top