mRNA_E-fasciculatus_F_contig1400.2937.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1400.2937.1
Unique NamemRNA_E-fasciculatus_F_contig1400.2937.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: D7FU98_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU98_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 5.080e-103
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 2
Query:  353 MRKRRSSTVLFARDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDASSSGPPPPAGSPFSTLNDAREAGKGSGSRKVDDGMVQSGVIDVESED 859
            MRKR SSTVLFAR GEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGD SSS PPPPAGSPFS LNDAREAGKG+GSRKVDDGMVQSGVIDV+SED
Sbjct:    1 MRKRSSSTVLFARQGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDVSSSAPPPPAGSPFSKLNDAREAGKGAGSRKVDDGMVQSGVIDVDSED 169          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S3ZL34_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZL34_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.570e-31
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  407 GPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNV 679
            G G  +L+R+ KL +S+LIDLIGMS+Y LP  GE  D+GWAP+S+ALIF+LYG+ IFA   F EEILPG D +PTATIAWFLT S+ GQ +
Sbjct:   44 GGGASELTREGKLIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATIAWFLTQSDAGQRI 134          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: R1CZS3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZS3_EMIHU)

HSP 1 Score: 122 bits (305), Expect = 1.090e-28
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  407 GPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDASSS 727
            GP  ++L    KL +S+LIDL+G++SYA+P  GE  DL WAP+S+ L+ YLYGNSI  GLAF EE+LPG DV+PTATI W L N+E+G++V  A+A   P+ DA SS
Sbjct:   74 GPDNERL---IKLLVSILIDLVGVASYAVPLAGEGADLAWAPVSALLVNYLYGNSILTGLAFAEEVLPGLDVVPTATIGWLLENTELGRSVNEASA-PPPKADAPSS 176          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S3AG80_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG80_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 4.540e-28
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  365 RSSTVLFARDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAA 691
            RS  ++ A    P     +Q ++  KL IS+LIDLIGM++Y  P VGE  DL WAPIS+ LI  LYGN++  GLAF EE+LPG D+IPTATIAW L N+E GQN  +AA
Sbjct:   47 RSWPLVLATPEPPTPLADEQQAKLGKLLISLLIDLIGMATYVFPLVGETGDLAWAPISALLINQLYGNALITGLAFAEELLPGLDIIPTATIAWVLENTEFGQNFNSAA 155          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S2RIK8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIK8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.340e-27
Identity = 54/90 (60.00%), Postives = 71/90 (78.89%), Query Frame = 2
Query:  407 GPGTQQ-LSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQ 673
            GPG +   S++ KL +S+L+DL+GMS+YALPGVGEA D+ WAPIS+ L+ YLYGN+  +GLA VEE+LPG D IPTATIAWF+T   + +
Sbjct:   65 GPGGEAGASKETKLLLSLLVDLVGMSTYALPGVGEAGDIAWAPISAILVQYLYGNAALSGLALVEELLPGLDFIPTATIAWFITYGTVSE 154          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A6U9ZMF8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9ZMF8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.960e-27
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  347 RAMRKRRSSTVLFA----RDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNS 661
            R +++R+SS + F      D     PG   +    KL + +LID IG++S+A PG+GEATD+GWAPIS+ L+ YL+GN +F  LA VEE+ PGFD +PTATIAWFL NS
Sbjct:   82 RLLQRRQSSVLRFGFGNGNDNSNNAPGGADMDPGLKLLVCILIDFIGVASFAAPGLGEATDVGWAPISAFLVNYLFGNGLFTALALVEELSPGFDFVPTATIAWFLENS 190          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S4E380_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E380_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.310e-25
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  407 GPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIA 643
            G G  +L+R+ KL +S+LIDLIGMS+Y LP  GE  D+GWAP+S+ALIF+LYG+ IFA   F EEILPG D +PTATIA
Sbjct:   44 GGGASELTREGKLIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATIA 122          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S2CFZ0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFZ0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.400e-25
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 2
Query:  416 TQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTN 658
            TQ+  +  KL +S+LID +G +S+ALPG+GEATD+GWAPIS  LI +LYGNS+ +GL FVEEILPGFD IPTATI     N
Sbjct:   68 TQEQEKAVKLLLSLLIDFVGYASFALPGLGEATDIGWAPISGILIQFLYGNSLLSGLGFVEEILPGFDFIPTATIGTLSCN 148          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S0Q5P0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5P0_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 2.210e-24
Identity = 59/124 (47.58%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  368 SSTVLFARDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKP-EGDASSSGPP 736
            SS    +R  +P    T+Q  + +KL IS+L+D IGM +YA+P  GEA D+GWAPIS+A++FYLYG  +   LA VEE+LPG D++PTATI W L  +E+        A + P E DAS+  PP
Sbjct:    4 SSGPRVSRAEQPPMDSTEQ-QKISKLLISLLVDAIGMFTYAIPVAGEAADIGWAPISAAVVFYLYGPGLLPALALVEELLPGLDIVPTATIGWLLEYTELRTAFGGGPAKEAPPETDASTDRPP 126          
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S3SDQ1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDQ1_9SPIT)

HSP 1 Score: 108 bits (271), Expect = 3.340e-24
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  437 AKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDASSSG 730
            AKL +S+LIDL+G S++ LP   E  DL WAP+S+ L+  LYGN +  GLAF EE+LP  D IPTATI W L N++IG+N   AAA +K  G A+ +G
Sbjct:   57 AKLLLSLLIDLVGFSTFVLPLAAEGADLAWAPVSALLVHQLYGNGLLTGLAFCEELLPATDFIPTATIGWVLENTQIGRNFNQAAADRKAGGAAAQAG 154          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU98_ECTSI5.080e-10395.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3ZL34_9STRA1.570e-3162.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1CZS3_EMIHU1.090e-2856.07Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3AG80_9EUKA4.540e-2855.05Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2RIK8_9STRA2.340e-2760.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U9ZMF8_9STRA7.960e-2751.38Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4E380_9STRA5.310e-2563.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2CFZ0_9STRA5.400e-2562.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0Q5P0_9EUKA2.210e-2447.58Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3SDQ1_9SPIT3.340e-2453.06Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1400contigE-fasciculatus_F_contig1400:7116..10236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue6.6e-83
Seed eggNOG ortholog2880.D7FU98
EggNOG OGs2CZ40@1,2S8A8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons4
Model size1489
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1400.2937.1prot_E-fasciculatus_F_contig1400.2937.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1400 7743..10115 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927892.8261979-UTR-E-fasciculatus_F_contig1400:7115..77421622927892.8261979-UTR-E-fasciculatus_F_contig1400:7115..7742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 7116..7742 -
1695995741.1061504-UTR-E-fasciculatus_F_contig1400:7115..77421695995741.1061504-UTR-E-fasciculatus_F_contig1400:7115..7742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 7116..7742 -
1622927892.9484847-UTR-E-fasciculatus_F_contig1400:10115..102361622927892.9484847-UTR-E-fasciculatus_F_contig1400:10115..10236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 10116..10236 -
1695995741.1532006-UTR-E-fasciculatus_F_contig1400:10115..102361695995741.1532006-UTR-E-fasciculatus_F_contig1400:10115..10236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1400 10116..10236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927892.8881385-CDS-E-fasciculatus_F_contig1400:7742..79511622927892.8881385-CDS-E-fasciculatus_F_contig1400:7742..7951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 7743..7951 -
1695995741.1178904-CDS-E-fasciculatus_F_contig1400:7742..79511695995741.1178904-CDS-E-fasciculatus_F_contig1400:7742..7951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 7743..7951 -
1622927892.9008737-CDS-E-fasciculatus_F_contig1400:8479..85511622927892.9008737-CDS-E-fasciculatus_F_contig1400:8479..8551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 8480..8551 -
1695995741.1273909-CDS-E-fasciculatus_F_contig1400:8479..85511695995741.1273909-CDS-E-fasciculatus_F_contig1400:8479..8551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 8480..8551 -
1622927892.91354-CDS-E-fasciculatus_F_contig1400:9097..91701622927892.91354-CDS-E-fasciculatus_F_contig1400:9097..9170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 9098..9170 -
1695995741.1367621-CDS-E-fasciculatus_F_contig1400:9097..91701695995741.1367621-CDS-E-fasciculatus_F_contig1400:9097..9170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 9098..9170 -
1622927892.9300401-CDS-E-fasciculatus_F_contig1400:9728..101151622927892.9300401-CDS-E-fasciculatus_F_contig1400:9728..10115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 9729..10115 -
1695995741.1448507-CDS-E-fasciculatus_F_contig1400:9728..101151695995741.1448507-CDS-E-fasciculatus_F_contig1400:9728..10115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1400 9729..10115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1400.2937.1

>prot_E-fasciculatus_F_contig1400.2937.1 ID=prot_E-fasciculatus_F_contig1400.2937.1|Name=mRNA_E-fasciculatus_F_contig1400.2937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=247bp
MGLLRLSSVVFPLLVRGEAFIASPPLLSALQQQQRSTLHPATVNAASLAH
PSRREQQPRPPTLLPSTVSLRPRSTRAMRKRRSSTVLFARDGEPMGPGTQ
QLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNS
IFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDAS
SSGPPPPAGSPFSTLNDAREAGKGSGSRKVDDGMVQSGVIDVESED*
back to top

mRNA from alignment at E-fasciculatus_F_contig1400:7116..10236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1400.2937.1 ID=mRNA_E-fasciculatus_F_contig1400.2937.1|Name=mRNA_E-fasciculatus_F_contig1400.2937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3121bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:7116..10236- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCGCATTCAAACTGGCATTTGCCCACACAGCTGTCACGCAAGCAAGGG AGTGAGAGATACGCCAAGCAGACGACGCTTTTCGGCGGCCTTCTGCTGTG GGACACTGCTGTTTATTTAGCATGGGGCTGCTTCGGTTGTCTTCCGTAGT ATTCCCCCTTCTCGTCCGCGGCGAGGCTTTCATAGCCAGCCCGCCGCTGC TGTCCGCACTGCAACAACAGCAACGTTCAACACTGCACCCAGCAACGGTC AACGCTGCCTCGCTCGCGCATCCCAGTCGTCGCGAGCAGCAACCACGACC ACCCACTCTCCTTCCCTCGACGGTATCGTTGCGTCCTCGATCAACACGCG CCATGAGAAAACGGCGCAGCAGCACAGTGCTGTTTGCGCGCGACGGGGAG CCCATGGGGCCGGGTACGCAGCAACTGTCCAGGCAAGCGAAGCTAGCGAT TTCCGTCCTGATCGATCTGATCGGGATGTCTTCCTATGCCCTCCCTGGCG TAGGCGAGGTGAGTCCACACGCTTTTGCCCTGGGGGACAGGAGGCTTGGG GGGCATCTCTATCTCTTTGACCAATAAGACCCGTACTGGTATTTTTGGAG GTCGCTATTTTTTATTTTTTTTTCTTCGATAAAACATGCACATGCGGCTG AGTAGCAACACAACTGCACTCGTGCCTTTGCAAGTCGAGCGCTTGATGGT TGCTCTTGCATGTGATAAGCAAGACGTTTGTGCAACACTCAGATACTTCT GTCCAAGCCTGTGAAGAGGTCGGACCTGATGTCCATGTGTGAGAAAGTGG CAGACTCTTGAGCAAATACTCGCGATGCAGTGTACAAGTCGCACACGCGG GACCTCCGATGAAACGTGTTTCTTCCCACTTCGCAGACTACAAAATACTC GAATAGAGTAGGCTGCAAGGCAGGGCGGATTCACTCGCTATTGTGCGTAT GCATAGATTGGAGAGTACTGTTGTGTGCGTCTCTGGCGCGCCGTCTCTTT TATCCTGTGCTGTTTTCTGCGCTTGTCGCGCACTCAACCGTGTCACGGCG TCTGTGCACGAGGCAGGCCACCGACCTCGGATGGGCGCCCATCAGCTCCG CCCTGATTTTCTACTTGTACGGCAACAGCATCTTCGCAGGTACAGCCAGT AGTCGCGCCGCTGATGACTCCTATTTCTCGCCAGATGTGTGTGTGTGTGT CACTTGATTTTCATTTGGGCGCACTACAGTAGTACAAGTTTCCTCATATT ACCCACCCCAATTCGGCAAGCCACCTCTAGCAAAATTCCCCCCTTTTCGT GCTGACACACGAGCGCATGTGTTTGAAATGCTTTCCCGTTTTCTGTAGGC ACATACCGTTTTCTACAGTAGTAGTGGCAACTAGCGTCACTACAACTCAA GTTAGACTCACTGCAGTTGTTCTCATCTCGCTGTTCCCAGGGCCTGCGCG GCCGTACTTGTTGTTCTGGTAACAAACTTCGTATGCTCTCGACTTCAGAG GTGGCCTGATGTTGCCCCTACGATGCCGAGGTCAGAGCGTGTGTGTAAGT TCCTACAGAGGCGGGTACCACCGAAGAGGGGACTCAGACGCGGTATGACA TGCACGAAGCACGTCTTCCTCAAACATGGCGTGGCGTCTGTTTTCATGTT CGTGCTACCGTGTCTCGCGTTATTTTTGTTCGCAGGACTCGCCTTTGTGG AGGAGATTCTGCCGGGCTTCGACGTTATTCCGACAGCAACGATCGCTTGG TTTTTGAGTGAGTTGTCGATTCCCTCGGGAATTGGTGCGTGCCAATGCGT GGAACCAAATATCGATAACTCTCCGCCCCTTTTTTTCGCACTTTCGGTCG GCAGCCCTTTTGGTTGGATTCTCCCTTGCGTGCGAGAGGAAACCAAGGGT GTGGAGCAATTGCAGAGTACGCGTGCTAAGCACGTTCCGTAGGCTATGGT GTAGAGTGCTCCCGAAAGCTTTTCTTTACCACCGGTAGTTCAATGGAAGC TTCCGATCGATTCCACCAACACCAACAACAAATATGAGCTACATGTGTCG TCTCGAGCTGGTGAACGAAATCGCTTTCTCGTATTTTCGAGCGTTTGGTG TTTCTTCCCAATCGCGTGTTGTTCTTTGAGATGCTCATTTTGCGCCGGCT GCCCGGGACGTGTACCAGCCAGTATTTATGCGGCAATAGCAATTGTATAG CAATTAACCTTCCCCTTCGCCATGCGCTGTGCCTTCTCCCGCCGTCTGCC CGCTCTCCCCTGGCGTTTGCGGTGTTACCCAACAGCCAACAGCGAGATAG GCCAAAACGTCACCAACGCCGCGGCTGGCAAGAAACCCGAAGGAGACGCC TCGTCCTCGGGTCCGCCGCCGCCAGCGGGATCACCGTTCTCAACATTGAA CGATGCGAGAGAGGCTGGCAAGGGATCGGGAAGCCGCAAAGTTGATGACG GCATGGTTCAGTCGGGGGTGATAGACGTGGAGTCTGAGGACTAACAATAG TGAACTTTCGTCGCACTAGCGTTATGTTTTCGTATGAGGAGAGTAGGGTC TGAGGTGTAGCAAGAAGGAGTCCGTCCTAGGTTTACGCGCGTATTTGCTC GCTGCTTTGCACTCTAGCTCGTTGTTGTGTTGGAGGCACACAGCAAACCA CGAAGTGCAAGGCGCTGCAATGTTGGGGCTCATGAGTATCGCTTAGGAAG ACGAAGATCGCTAGATTATCATAGAGGATTTTACCTAGTCACCCCACACC GCACTAGAAAAGACTGCGCCCGACATGGTTGAGAAGCAATCCAGAGGGAG CGAACGACAGACACACATGGCTCACTAGCGCAGTCTTGCTCGGGCATTCT GTAGCTGCTGCTGCTGCCGCGTTGCGTTATGTTGGGGTTGGCGCCGTCTT CATGTTTGAAGAACCATTCTGAAGTAATGTCCAGCATGCCCGTGTCGTGT TCGACCATTTGGTCCGGTGTGAGACTCAAGTTTCCGATATCAACGACCAA GCGCAGCAAGTATTTTACGGGGCGAGTGGGTGCCATCCTCGTCGTTGCTT GCCATCGCTGGCCGTTGACTTGGCTCTTACTGCCTAGGAGAACACAGCCG GGAATTAATTTACCAGGGAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1400:7116..10236-

>mRNA_E-fasciculatus_F_contig1400.2937.1 ID=mRNA_E-fasciculatus_F_contig1400.2937.1|Name=mRNA_E-fasciculatus_F_contig1400.2937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:7116..10236- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCTGCTTCGGTTGTCTTCCGTAGTATTCCCCCTTCTCGTCCGCGG
CGAGGCTTTCATAGCCAGCCCGCCGCTGCTGTCCGCACTGCAACAACAGC
AACGTTCAACACTGCACCCAGCAACGGTCAACGCTGCCTCGCTCGCGCAT
CCCAGTCGTCGCGAGCAGCAACCACGACCACCCACTCTCCTTCCCTCGAC
GGTATCGTTGCGTCCTCGATCAACACGCGCCATGAGAAAACGGCGCAGCA
GCACAGTGCTGTTTGCGCGCGACGGGGAGCCCATGGGGCCGGGTACGCAG
CAACTGTCCAGGCAAGCGAAGCTAGCGATTTCCGTCCTGATCGATCTGAT
CGGGATGTCTTCCTATGCCCTCCCTGGCGTAGGCGAGATGGGGCTGCTTC
GGTTGTCTTCCGTAGTATTCCCCCTTCTCGTCCGCGGCGAGGCTTTCATA
GCCAGCCCGCCGCTGCTGTCCGCACTGCAACAACAGCAACGTTCAACACT
GCACCCAGCAACGGTCAACGCTGCCTCGCTCGCGCATCCCAGTCGTCGCG
AGCAGCAACCACGACCACCCACTCTCCTTCCCTCGACGGTATCGTTGCGT
CCTCGATCAACACGCGCCATGAGAAAACGGCGCAGCAGCACAGTGCTGTT
TGCGCGCGACGGGGAGCCCATGGGGCCGGGTACGCAGCAACTGTCCAGGC
AAGCGAAGCTAGCGATTTCCGTCCTGATCGATCTGATCGGGATGTCTTCC
TATGCCCTCCCTGGCGTAGGCGAGGCCACCGACCTCGGATGGGCGCCCAT
CAGCTCCGCCCTGATTTTCTACTTGTACGGCAACAGCATCTTCGCAGGCC
ACCGACCTCGGATGGGCGCCCATCAGCTCCGCCCTGATTTTCTACTTGTA
CGGCAACAGCATCTTCGCAGGACTCGCCTTTGTGGAGGAGATTCTGCCGG
GCTTCGACGTTATTCCGACAGCAACGATCGCTTGGTTTTTGAGACTCGCC
TTTGTGGAGGAGATTCTGCCGGGCTTCGACGTTATTCCGACAGCAACGAT
CGCTTGGTTTTTGACCAACAGCGAGATAGGCCAAAACGTCACCAACGCCG
CGGCTGGCAAGAAACCCGAAGGAGACGCCTCGTCCTCGGGTCCGCCGCCG
CCAGCGGGATCACCGTTCTCAACATTGAACGATGCGAGAGAGGCTGGCAA
GGGATCGGGAAGCCGCAAAGTTGATGACGGCATGGTTCAGTCGGGGGTGA
TAGACGTGGAGTCTGAGGACTAACCAACAGCGAGATAGGCCAAAACGTCA
CCAACGCCGCGGCTGGCAAGAAACCCGAAGGAGACGCCTCGTCCTCGGGT
CCGCCGCCGCCAGCGGGATCACCGTTCTCAACATTGAACGATGCGAGAGA
GGCTGGCAAGGGATCGGGAAGCCGCAAAGTTGATGACGGCATGGTTCAGT
CGGGGGTGATAGACGTGGAGTCTGAGGACTAA
back to top