mRNA_E-fasciculatus_F_contig1400.2937.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: D7FU98_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU98_ECTSI) HSP 1 Score: 314 bits (805), Expect = 5.080e-103 Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 2
Query: 353 MRKRRSSTVLFARDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDASSSGPPPPAGSPFSTLNDAREAGKGSGSRKVDDGMVQSGVIDVESED 859
MRKR SSTVLFAR GEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGD SSS PPPPAGSPFS LNDAREAGKG+GSRKVDDGMVQSGVIDV+SED
Sbjct: 1 MRKRSSSTVLFARQGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDVSSSAPPPPAGSPFSKLNDAREAGKGAGSRKVDDGMVQSGVIDVDSED 169
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S3ZL34_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZL34_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.570e-31 Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 2
Query: 407 GPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNV 679
G G +L+R+ KL +S+LIDLIGMS+Y LP GE D+GWAP+S+ALIF+LYG+ IFA F EEILPG D +PTATIAWFLT S+ GQ +
Sbjct: 44 GGGASELTREGKLIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATIAWFLTQSDAGQRI 134
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: R1CZS3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZS3_EMIHU) HSP 1 Score: 122 bits (305), Expect = 1.090e-28 Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 2
Query: 407 GPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDASSS 727
GP ++L KL +S+LIDL+G++SYA+P GE DL WAP+S+ L+ YLYGNSI GLAF EE+LPG DV+PTATI W L N+E+G++V A+A P+ DA SS
Sbjct: 74 GPDNERL---IKLLVSILIDLVGVASYAVPLAGEGADLAWAPVSALLVNYLYGNSILTGLAFAEEVLPGLDVVPTATIGWLLENTELGRSVNEASA-PPPKADAPSS 176
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S3AG80_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG80_9EUKA) HSP 1 Score: 120 bits (300), Expect = 4.540e-28 Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 2
Query: 365 RSSTVLFARDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAA 691
RS ++ A P +Q ++ KL IS+LIDLIGM++Y P VGE DL WAPIS+ LI LYGN++ GLAF EE+LPG D+IPTATIAW L N+E GQN +AA
Sbjct: 47 RSWPLVLATPEPPTPLADEQQAKLGKLLISLLIDLIGMATYVFPLVGETGDLAWAPISALLINQLYGNALITGLAFAEELLPGLDIIPTATIAWVLENTEFGQNFNSAA 155
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S2RIK8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIK8_9STRA) HSP 1 Score: 119 bits (297), Expect = 2.340e-27 Identity = 54/90 (60.00%), Postives = 71/90 (78.89%), Query Frame = 2
Query: 407 GPGTQQ-LSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQ 673
GPG + S++ KL +S+L+DL+GMS+YALPGVGEA D+ WAPIS+ L+ YLYGN+ +GLA VEE+LPG D IPTATIAWF+T + +
Sbjct: 65 GPGGEAGASKETKLLLSLLVDLVGMSTYALPGVGEAGDIAWAPISAILVQYLYGNAALSGLALVEELLPGLDFIPTATIAWFITYGTVSE 154
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A6U9ZMF8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9ZMF8_9STRA) HSP 1 Score: 118 bits (295), Expect = 7.960e-27 Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 2
Query: 347 RAMRKRRSSTVLFA----RDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNS 661
R +++R+SS + F D PG + KL + +LID IG++S+A PG+GEATD+GWAPIS+ L+ YL+GN +F LA VEE+ PGFD +PTATIAWFL NS
Sbjct: 82 RLLQRRQSSVLRFGFGNGNDNSNNAPGGADMDPGLKLLVCILIDFIGVASFAAPGLGEATDVGWAPISAFLVNYLFGNGLFTALALVEELSPGFDFVPTATIAWFLENS 190
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S4E380_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E380_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.310e-25 Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 2
Query: 407 GPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIA 643
G G +L+R+ KL +S+LIDLIGMS+Y LP GE D+GWAP+S+ALIF+LYG+ IFA F EEILPG D +PTATIA
Sbjct: 44 GGGASELTREGKLIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATIA 122
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S2CFZ0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFZ0_9STRA) HSP 1 Score: 110 bits (276), Expect = 5.400e-25 Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 2
Query: 416 TQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTN 658
TQ+ + KL +S+LID +G +S+ALPG+GEATD+GWAPIS LI +LYGNS+ +GL FVEEILPGFD IPTATI N
Sbjct: 68 TQEQEKAVKLLLSLLIDFVGYASFALPGLGEATDIGWAPISGILIQFLYGNSLLSGLGFVEEILPGFDFIPTATIGTLSCN 148
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S0Q5P0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5P0_9EUKA) HSP 1 Score: 108 bits (271), Expect = 2.210e-24 Identity = 59/124 (47.58%), Postives = 80/124 (64.52%), Query Frame = 2
Query: 368 SSTVLFARDGEPMGPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKP-EGDASSSGPP 736
SS +R +P T+Q + +KL IS+L+D IGM +YA+P GEA D+GWAPIS+A++FYLYG + LA VEE+LPG D++PTATI W L +E+ A + P E DAS+ PP
Sbjct: 4 SSGPRVSRAEQPPMDSTEQ-QKISKLLISLLVDAIGMFTYAIPVAGEAADIGWAPISAAVVFYLYGPGLLPALALVEELLPGLDIVPTATIGWLLEYTELRTAFGGGPAKEAPPETDASTDRPP 126
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Match: A0A7S3SDQ1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDQ1_9SPIT) HSP 1 Score: 108 bits (271), Expect = 3.340e-24 Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 2
Query: 437 AKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPEGDASSSG 730
AKL +S+LIDL+G S++ LP E DL WAP+S+ L+ LYGN + GLAF EE+LP D IPTATI W L N++IG+N AAA +K G A+ +G
Sbjct: 57 AKLLLSLLIDLVGFSTFVLPLAAEGADLAWAPVSALLVHQLYGNGLLTGLAFCEELLPATDFIPTATIGWVLENTQIGRNFNQAAADRKAGGAAAQAG 154 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1400.2937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1400.2937.1 >prot_E-fasciculatus_F_contig1400.2937.1 ID=prot_E-fasciculatus_F_contig1400.2937.1|Name=mRNA_E-fasciculatus_F_contig1400.2937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=247bp MGLLRLSSVVFPLLVRGEAFIASPPLLSALQQQQRSTLHPATVNAASLAHback to top mRNA from alignment at E-fasciculatus_F_contig1400:7116..10236- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1400.2937.1 ID=mRNA_E-fasciculatus_F_contig1400.2937.1|Name=mRNA_E-fasciculatus_F_contig1400.2937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3121bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:7116..10236- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1400:7116..10236- >mRNA_E-fasciculatus_F_contig1400.2937.1 ID=mRNA_E-fasciculatus_F_contig1400.2937.1|Name=mRNA_E-fasciculatus_F_contig1400.2937.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:7116..10236- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |