|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1399.2920.1 vs. uniprot
Match: D8LS79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS79_ECTSI) HSP 1 Score: 249 bits (635), Expect = 1.220e-74 Identity = 179/262 (68.32%), Postives = 187/262 (71.37%), Query Frame = 1
Query: 316 TSLPSSSELCPDETAACYESTLCWDCVAQFEDSSGYCEDRYPVLAAEDDDGCESASALYCCSFDASGQDCLDDTVTLDYFRCGVLEGSGCDLSDSPCGGSXXXXXXXXXXLGTGTSLSPAXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXESVXXXXXXXXXSWADEND---------------------DSSPSAXXXXXXXXDEENDDLDADSGDTSGAAGTFAAPSPSSSAPSLWVALYCIVLVFTDALARL 1038
T+LPSSSELCPDETAACYESTLCWDCVAQFEDSS YCEDR+PVLAAEDDDGCE+ASALYCCSFDASGQDCLDDTVT+DYFRCGVLEGSGCDLSDSPCGGSXXXXXXXXXX XXXXXXXXX XXXXXXX X ES XXX +WAD+ DSSPS XXX DEENDDL DSGD SGAA TFAAPS SSSA SLW ALYCIVLV +DALAR+
Sbjct: 45 TTLPSSSELCPDETAACYESTLCWDCVAQFEDSSEYCEDRFPVLAAEDDDGCEAASALYCCSFDASGQDCLDDTVTVDYFRCGVLEGSGCDLSDSPCGGSXXXXXXXXXXX-------------------------XXXXXXXXXXXXXXXXXADXDESADNXXXADGDAWADDXXXXXXXXXXXXXXXXXXXXXXXDSSPSXXXXGSQSADEENDDLGPDSGDNSGAAWTFAAPSRSSSAVSLWGALYCIVLVVSDALARI 281
BLAST of mRNA_E-fasciculatus_F_contig1399.2920.1 vs. uniprot
Match: A0A6H5L2W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W4_9PHAE) HSP 1 Score: 234 bits (596), Expect = 1.380e-68 Identity = 174/241 (72.20%), Postives = 181/241 (75.10%), Query Frame = 1
Query: 316 TSLPSSSELCPDETAACYESTLCWDCVAQFEDSSGYCEDRYPVLAAEDDDGCESASALYCCSFDASGQDCLDDTVTLDYFRCGVLEGSGCDLSDSPCGGSXXXXXXXXXXLGTGTSLSPAXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXESVXXXXXXXXXSWADENDDSSPSAXXXXXXXXDEENDDLDADSGDTSGAAGTFAAPSPSSSAPSLWVALYCIVLVFTDALARL 1038
TSLPSSSELCPDETAACYESTLCWDCVAQFEDSS YCEDRYPVLAAEDDDGCE+A+ALYCCSFDASG+DCLDDTVT+DYFRC V+E SGCDLSDSPCGGSXXXXXXXXXX XXXXXXXXXXXX XXX XXXXXXXXXXX XX DSSPS DEENDDL DSGDTSGA GTFAA S +SSA LW AL CIVLV TDALAR+
Sbjct: 75 TSLPSSSELCPDETAACYESTLCWDCVAQFEDSSEYCEDRYPVLAAEDDDGCEAATALYCCSFDASGEDCLDDTVTVDYFRCSVVEVSGCDLSDSPCGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFADNDESAYXXXXXXXXXXXXXXXXXXXXDY------------DSSPSEDDDGSQSADEENDDLGPDSGDTSGAIGTFAALSRASSAAFLWGALCCIVLVVTDALARI 303
BLAST of mRNA_E-fasciculatus_F_contig1399.2920.1 vs. uniprot
Match: A0A6H5JEP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 7.450e-23 Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 316 TSLPSSS-ELCPDETAACYESTLCWDCVAQF-EDSSGYCEDRYPVLAAEDDDGCESASALYCCSFDASGQDCLDDTVTLDYFRCGVLE 573
TSLPSSS E C +E AACY+S LCWDCVAQF ED C +RYP ++ C+ ASAL+CCSF SGQDCLDD VT+++F+CG+ E
Sbjct: 38 TSLPSSSSEACVEEAAACYDSALCWDCVAQFAEDGVDSCGERYPAMSNSGASDCDVASALFCCSFYVSGQDCLDDAVTMEFFQCGLEE 125
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_004510.2 |
| Exons | 2 |
| Model size | 1814 |
| Cds size | 1023 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1399.2920.1 >prot_E-fasciculatus_F_contig1399.2920.1 ID=prot_E-fasciculatus_F_contig1399.2920.1|Name=mRNA_E-fasciculatus_F_contig1399.2920.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=341bp
MVGRGRRRQRPCVVRMVADAVPFGGAGQNRGREVTVTRNKKERIDTTTTT TATTTDGVAVAASTCPEIKKARAAPFRFALPLPLLLVADALRLRLASAST SLPSSSELCPDETAACYESTLCWDCVAQFEDSSGYCEDRYPVLAAEDDDG CESASALYCCSFDASGQDCLDDTVTLDYFRCGVLEGSGCDLSDSPCGGSS SSTTSSDDNLGTGTSLSPADDDESSTPAPAAYDESVVVVVDDDDSYDESV VVVDDDESVDDDESADDDSWADENDDSSPSADDGGSPSADEENDDLDADS GDTSGAAGTFAAPSPSSSAPSLWVALYCIVLVFTDALARL* back to topmRNA from alignment at E-fasciculatus_F_contig1399:5637..10331+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1399.2920.1 ID=mRNA_E-fasciculatus_F_contig1399.2920.1|Name=mRNA_E-fasciculatus_F_contig1399.2920.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4695bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1399:5637..10331+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) AACTTCCTTTGCTCGGCGATGGTGGGTCGAGGGAGGAGACGTCAACGCCC
GTGCGTTGTGCGCATGGTAGCTGATGCAGTACCATTTGGAGGAGCTGGTC
AAAACAGAGGGCGAGAGGTGAGATTGTGAGAGTTCTACAGAGAGTTTTCG
CGTTTGACCAAACACTCTCTCTGCCGAGCTCCGTCGCTCCCACTCAAGAC
TATCCCTCTCCCCGTCCACATGAAATTTTGCGACAGTATTCGACCCCTAC
AAGGGTGTGCCTGCTTGGTAGTGATCTTCGGTTGTAATGTAGCTCAACTC
GTATGCTAGAAAAGGTTCGACACAGCTCGTGGGATACAAACAGCACATGA
ATGAAATGCTTCGCAAATGTGTGCGTGCGATGATCATGAGTTTTGAACAT
GAGCCCGCTGCAGCCCGGCACTTGACCCCCTCAGTCCACCCGGCAGTGAC
ATGCGGCAGTCTACATGGCGATCGATTAGATCGTTGGGCTCGTGCTATCC
AACAGAAACGTATGCTCCTCCTGGACAGCACCCTGTATGGGATGTACAAG
TATTGGTGATAATGGTTTGACGCTTTCAAGGAGCAGCGACACATGCGTTT
TGGCACACGCCTCAACAGATCAGTTTCTGGATCGCAGCAGCCACGGCTGC
AGCTCGCGGTCCGAAAAGTCCGCAAGTCTGGTTCCGTACGATTCACGATC
CACTGCTGTCCGCGCCGTGGCAGACCCAGTCCCCCTTACTTCGGGCCGCC
CAAGGCTACATAGGTGGCGACGACGTGTGACAGCAAAACTCTTGATTTGT
GTGTACGGGCCGAGCAAGCTGCAGCCTTCCCACAGCACGACGCCAGCAGC
AGATCTGGGCGTGCCAACGCGTACGTCGCCGGTCCACCGTCTCGTGTGTT
AACCGATTTGTCTCCTACCGATTTGGCAAGAACTTTCAAAGCGCCCGCCG
TTTCGCGTGGTAGATCTTCAAATGGAGTTACGGAAATATCGTCTTGATTT
AAGAGAGGGTTTGTGGAAGTAGATTGAATGATATGCCTGTAGAGACCAGA
GCCGACCGCTGCTCTGTGCGACAAACAGAGTTTTTTTCGTGCGCAACACT
CATCTCGTGTGTGCTTGGTGGGTGCTCTGTCTGTCTGTCTGTCGGTCATT
GTTTCACATTAGACAATGCCAAGATCGACCTTCAGCACCCCCTTGATGAA
ACCCTTTTGGACGCACAGAAAACTCGGCGTCCTCACGCGAAATTGCTGAA
ACAACAAAATAGAGACGCCTGACTGGATGATGCGGACACTTGCAGCCCTG
GGTGCGGGTGCACAGCTGTCTCCCCACCTGAGCCGTTCTCTTGCCAAACA
GCCCTATCAAATGGCCCCTCGTTTGTCGAGGGCCATTTGATCGGGGACTA
GACACCTGGCAGGCGCATGGTACACGGAGCACGACAAGGAGGTTTCCAAG
GTATTCCTCAAGAGACCCAGCGAGACCTGAAGTCCCAGCTCTAGGTTGCC
CAGTGTCTCCTTTCATCGGTTGGCGAGGTGCTTCTCCCGCGCTTGCCCCT
AATAGCCCTTTCCACCAAGCACAGATAGATGTGGCACAACTTCGCTGTTG
AACCTGCGGTATAGTCCCGCGATTCTCCCTGCCATTCCCCTCTTACTCCT
GCCCTCTGCAAAGCACCCACACTAGACTTGACGAGACTACAATGCTCCCC
GCGCACCCCGGCACCCACGTTGTCGAGGAATTCAAAGGTGGAGGCGGCCG
TGCCGTTCTGCGCGAGCTAAATCAGGTGAACAAGGATGGGGTCAAAAAGT
CGCCCCCAAGGGTCGATCAAGCCCTAATTTGTGTTGGGAAGACGGATGCC
GGCCGATGGGAGCGTTTATTGGGTGGTGCCTGTTATGGCGATGGCGAGAA
ACAGGCGGGTGCATATACTTGGGGGGGGAAGGCGCGGGGTCACTGGAAGT
GCGCCCCCGGCGTTTTGAGAACATGCTGCCGCAGAGAACCCTCATTAACA
GACGAATACACCGTACACTAAGGAACGTACGACAGCTGCAATACTCCGAA
TAGAATAATACCATCGGCAAGTGGTGAAACACAATCCTTCGAGCGAACGA
CAATGGCACGCTGTCTGCTACAAAGTTTCTCGCACACAAATATGGCCCTT
CTGAGCACATCGACATGACAAGATCCCATTACATATTTCCGCTCTTCTCG
TCCCAACATATTACTGTTCTTATGCTTGCTTGCAAATACGATGAAAACCA
AAGCCGATACCAACAGTAAACGGCTCTCTGGTGTACTATGCTAGTGTTTC
GGTCACCACAACTCTGTGATCCACTGCTTGCCGTGATACCAAACCTTGGT
GTTCGTGGATGTGTAGCTACGAGGTCTCGTTGGTTGAACGAGCTGCCAAG
AAAAAGTAAGCGGCAGAAGAAGCAAACGCGTACGCTCCCAGAGGGATTAC
TTTCCCGTTTGTACCGCTTCGACTACGGTAGTAGACAGTGTGTTGGTCTT
CCCCTGACCGATGAATCATACATCTATCACACGGCGGTAGCGACCTTCAA
ATGAGTCCTTCGGCGAGATGTACTCTTTCTATGGATAGCAGGGCGAGCCG
CATACCCCAACAGCCTGCCGAACAATTTTCAAGAAAACGCGGCGTGCATG
TCCAGCTTTGCGAGCACCGGACAGCGGAAAACCGCGATCTTCGTATCTAC
CATGATTGTTTGAGCTCTCTGATGTCTTGGTTTCGAGCGCGTTTATTCTT
GCTGCTCGGCTACTCGGCTGATCAACGGACGTTCCTCAGTCTCAGCGGGA
AAAGATACGCATTCTAGCCCGTGCGCTCCCGTGGCCGGGGGGCCGCAGAT
GAGACCGGAAGGAAGGCTTCAGGTCTGGATCGAACATGTTTACGAAGAAA
TGAAACGAAGGAATTTATCCACTAAGAATATCTTCCTCTCCTCATTTTTC
TCTCCCTTCTTCTCTCTCTCTTCCGCTCGCGTTCGACGTTATCTGCAGGT
TACTGTGACGAGAAACAAGAAAGAAAGGATAGACACCACTACCACCACTA
CCGCCACCACCACGGACGGGGTCGCCGTCGCTGCTTCGACTTGTCCGGAA
ATCAAGAAAGCGAGAGCAGCCCCTTTCCGTTTCGCGCTCCCCCTCCCCCT
CCTCCTTGTCGCCGACGCCCTGAGACTACGTCTCGCGAGCGCGTCGACTA
GCCTGCCGTCCTCCAGTGAGCTGTGCCCAGACGAGACGGCGGCGTGCTAC
GAATCAACGCTCTGCTGGGACTGCGTCGCGCAGTTCGAGGACAGCTCCGG
CTACTGCGAGGACCGCTACCCGGTCTTGGCCGCTGAGGACGATGATGGCT
GCGAGTCTGCGTCTGCCCTGTACTGCTGCAGCTTCGACGCGAGCGGCCAG
GACTGCCTCGACGACACGGTCACCTTGGACTACTTTCGGTGCGGCGTTCT
CGAGGGCAGCGGCTGCGATCTGTCCGACTCACCGTGCGGGGGAAGCAGCA
GCTCTACCACCAGCTCCGATGACAATCTGGGGACGGGAACATCACTGTCG
CCGGCTGACGACGACGAATCATCAACACCTGCACCTGCTGCTTATGATGA
ATCTGTTGTTGTCGTTGTTGATGATGATGACTCTTATGATGAATCTGTTG
TTGTTGTTGATGACGATGAATCTGTTGATGACGATGAATCTGCTGATGAC
GACTCGTGGGCTGATGAAAATGACGACTCATCACCGTCTGCTGATGATGG
CGGATCGCCGTCTGCTGATGAGGAAAATGATGACCTTGATGCCGACTCAG
GCGACACCAGCGGGGCAGCGGGGACTTTTGCAGCTCCTTCGCCCTCTTCG
AGTGCCCCTTCCCTGTGGGTTGCGCTTTACTGTATCGTCCTGGTATTCAC
GGACGCATTAGCAAGATTATAGTGTTGACCTGTACTTCTGTTGCGTGAAG
AAGGAAACCGACGCTAAGAGAGCGTCGCATGTTTGACAAGGGACTTTTGT
GAAGGTAGCTTACCTGTGTTGTGTCTCGAAATGGGTTGATTCTATCGTCT
TGGCGTATGTGCTTTGTTGAATGTAATTTACTTCCCAAAAATGTTGGGGC
TGTCGTGGACTGCATCTTGTTGAAAATGATGCACGCGGTGTGTATTTGTT
GGCGGTTTGGCCGTGCCGATTTAAATTGAGTTGACTCTGCCCAAGGGCTG
CCCAAGGGCAGGCTGGTTTTTACGCATGCGAGGGGTCAACGGCAGCGGTT
TGGAAATTGAGTTTCTCGCGTTCGCTGCGGACGTGGGGATAGGAGGAAGA
AGGGCCCTAGGCCCTCGAAAAATGTGGAGAGTGTTGGTGTTTGGCGTTAG
CAGGAGGGTCTGGCGTCACCGTCTGCCGGTGGCCTCAAGTACAGATCTGT
CCATCTTTGGTAGATTCCGGGGCGGACGGGAGCGGGCTGCCATTTCACTC
ATACGAGGTCTCTGGACATGGTTGTAGCGTTGTTCGCTAAGCTGCTAGTC
GTGTTGCCCACAGCAAATACGCCATTCACGGGTTGAAAAGGTATGCTTTG
CTCGTTCGAGATTTCGATTTAACCTATTGGTCTACATTTTCATATGCTGG
TTTTACCTCAAGTGGCGTGTGGACCAGATAGATGGGAATTTTGTCGGCGC
CGGGCAGCATGCTGTCAAGCGCCTTGTGTTCTACTGCGCTCAGCG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1399:5637..10331+ >mRNA_E-fasciculatus_F_contig1399.2920.1 ID=mRNA_E-fasciculatus_F_contig1399.2920.1|Name=mRNA_E-fasciculatus_F_contig1399.2920.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2046bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1399:5637..10331+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGTGGGTCGAGGGAGGAGACGTCAACGCCCGTGCGTTGTGCGCATGGT AGCTGATGCAGTACCATTTGGAGGAGCTGGTCAAAACAGAGGGCGAGAGA TGGTGGGTCGAGGGAGGAGACGTCAACGCCCGTGCGTTGTGCGCATGGTA GCTGATGCAGTACCATTTGGAGGAGCTGGTCAAAACAGAGGGCGAGAGGT TACTGTGACGAGAAACAAGAAAGAAAGGATAGACACCACTACCACCACTA CCGCCACCACCACGGACGGGGTCGCCGTCGCTGCTTCGACTTGTCCGGAA ATCAAGAAAGCGAGAGCAGCCCCTTTCCGTTTCGCGCTCCCCCTCCCCCT CCTCCTTGTCGCCGACGCCCTGAGACTACGTCTCGCGAGCGCGTCGACTA GCCTGCCGTCCTCCAGTGAGCTGTGCCCAGACGAGACGGCGGCGTGCTAC GAATCAACGCTCTGCTGGGACTGCGTCGCGCAGTTCGAGGACAGCTCCGG CTACTGCGAGGACCGCTACCCGGTCTTGGCCGCTGAGGACGATGATGGCT GCGAGTCTGCGTCTGCCCTGTACTGCTGCAGCTTCGACGCGAGCGGCCAG GACTGCCTCGACGACACGGTCACCTTGGACTACTTTCGGTGCGGCGTTCT CGAGGGCAGCGGCTGCGATCTGTCCGACTCACCGTGCGGGGGAAGCAGCA GCTCTACCACCAGCTCCGATGACAATCTGGGGACGGGAACATCACTGTCG CCGGCTGACGACGACGAATCATCAACACCTGCACCTGCTGCTTATGATGA ATCTGTTGTTGTCGTTGTTGATGATGATGACTCTTATGATGAATCTGTTG TTGTTGTTGATGACGATGAATCTGTTGATGACGATGAATCTGCTGATGAC GACTCGTGGGCTGATGAAAATGACGACTCATCACCGTCTGCTGATGATGG CGGATCGCCGTCTGCTGATGAGGAAAATGATGACCTTGATGCCGACTCAG GCGACACCAGCGGGGCAGCGGGGACTTTTGCAGCTCCTTCGCCCTCTTCG AGTGCCCCTTCCCTGTGGGTTGCGCTTTACTGTATCGTCCTGGTATTCAC GGACGCATTAGCAAGATTATAGGTTACTGTGACGAGAAACAAGAAAGAAA GGATAGACACCACTACCACCACTACCGCCACCACCACGGACGGGGTCGCC GTCGCTGCTTCGACTTGTCCGGAAATCAAGAAAGCGAGAGCAGCCCCTTT CCGTTTCGCGCTCCCCCTCCCCCTCCTCCTTGTCGCCGACGCCCTGAGAC TACGTCTCGCGAGCGCGTCGACTAGCCTGCCGTCCTCCAGTGAGCTGTGC CCAGACGAGACGGCGGCGTGCTACGAATCAACGCTCTGCTGGGACTGCGT CGCGCAGTTCGAGGACAGCTCCGGCTACTGCGAGGACCGCTACCCGGTCT TGGCCGCTGAGGACGATGATGGCTGCGAGTCTGCGTCTGCCCTGTACTGC TGCAGCTTCGACGCGAGCGGCCAGGACTGCCTCGACGACACGGTCACCTT GGACTACTTTCGGTGCGGCGTTCTCGAGGGCAGCGGCTGCGATCTGTCCG ACTCACCGTGCGGGGGAAGCAGCAGCTCTACCACCAGCTCCGATGACAAT CTGGGGACGGGAACATCACTGTCGCCGGCTGACGACGACGAATCATCAAC ACCTGCACCTGCTGCTTATGATGAATCTGTTGTTGTCGTTGTTGATGATG ATGACTCTTATGATGAATCTGTTGTTGTTGTTGATGACGATGAATCTGTT GATGACGATGAATCTGCTGATGACGACTCGTGGGCTGATGAAAATGACGA CTCATCACCGTCTGCTGATGATGGCGGATCGCCGTCTGCTGATGAGGAAA ATGATGACCTTGATGCCGACTCAGGCGACACCAGCGGGGCAGCGGGGACT TTTGCAGCTCCTTCGCCCTCTTCGAGTGCCCCTTCCCTGTGGGTTGCGCT TTACTGTATCGTCCTGGTATTCACGGACGCATTAGCAAGATTATAG back to top
|