prot_E-fasciculatus_F_contig1391.2869.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1391.2869.1
Unique Nameprot_E-fasciculatus_F_contig1391.2869.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length557
Homology
BLAST of mRNA_E-fasciculatus_F_contig1391.2869.1 vs. uniprot
Match: A0A4U0UGE6_9PEZI (USP domain-containing protein n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UGE6_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 8.810e-6
Identity = 74/305 (24.26%), Postives = 122/305 (40.00%), Query Frame = 0
Query:  158 TCYLGSLLQLVSIPSTSMGAAFVQLAKATDNDKRTKLPVTFKV------GNIADQVNSPPAATEGPLL-----GVHHPFI-------GADGYLGGGFATVRQQHCVDEAHC-RLFDRVREEATKAEFP--VPPPLALSAVKSTTTIHCPGCQTSHDNLDEAPSIRVSF---------ADGAQKPATLQQLLEDTTQKETRDLAGCQCGAQITHASLKYHELPETLVVFVRRAA-----ADGTKLDTPLKFGL-TGTPLQDEVYDVKGIIVHDGERSDSGHYSAYVPAEGDGTGWLHVNDSRVTEV 426
            T  LG+L  + +  ++S+    + +   T + +  K+    +       G+ AD+V S        LL     G   PF        G  G   GG +   +     +  C   F ++     +AE P  V    +L  V +T+T  C         +   P + +S           +G  K   LQ LL ++    T  +   +C         ++  LPE LVV +RRA+      D TK+ T +   L  G  L ++ YDV  +++H G+ + SGHY+AY      G  W  ++D   T+V
Sbjct:  379 TSLLGALKDVETFGASSLHVNLLNVGTKTKSREMGKMKAAIRAAIQRDAGDDADRVRSHLHDVLHRLLDRNASGAVAPFFLQMAFAYGGTGTASGGLSLREEMSGDTQEDCVEFFQKLMNVLCEAEDPTAVDGLRSLFEVITTSTDVCEDGCIVDTGMTSTPEVSISHELFVPETTPVNG--KSHDLQTLLANSMTSSTEQVC-TKCKTGTVSRVKRFATLPEQLVVEIRRASFDRATGDQTKITTEVVLPLDAGIQLVEQQYDVVAVVMHRGQHTHSGHYTAY---RKQGAEWFLMDDEEATKV 677          
BLAST of mRNA_E-fasciculatus_F_contig1391.2869.1 vs. uniprot
Match: A0A250X3I7_9CHLO (USP domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3I7_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 1.780e-5
Identity = 79/330 (23.94%), Postives = 132/330 (40.00%), Query Frame = 0
Query:  151 GIQNGGNTCYLGSLLQLV--SIPSTSMGAAFVQLAKATDNDKRTKLPVTFKVGNIADQVNSPPAATEGPLLGVHHPFIGADGYLGGGFATVRQQHCVDEAHCRLFDRVREEATKAEFPVPPPLALS--------AVKSTTTIHCPGCQTSHDNLDEAPSIRVSFADGAQKPATLQQLLEDTTQKETRDLAG---CQCGAQITHA--SLKYHELPETLVVFVRRA--AADGTKLDTPLKF-------------GLTGT--PLQDEVYDVKGIIVHDGERSDSGHYSAYVPAEGDGTG-WLHVNDSRVTEVGAGVVTDQNP-AMFVMERQGR 446
            G+QN GNTC++ S+LQ +  + P   +  + V+      ND      +  +      ++ +P A  +G  +                F   RQ+   +   C L D + E   K   P PPP   S        A +  + I C          D  P + +S      +  ++++ L+  T  E  D      C    ++  A   +  HE P  L V ++R    + G+K+   +++             GLTG   P   ++YD+ G++VH G    SGHY ++V      TG W   +D+ V +VG  +V  Q    +F + RQ R
Sbjct:   96 GLQNLGNTCFMNSVLQCLFHTPPLCELFMSDVRYGGGYPNDPVHMTQLLIQRAFSGPRIIAPSAHAKGLKI------------FNKKFRLGRQEDSHEFLRC-LLDAMHEALLKPFQPKPPPDLASTTLVYRIFAGRLRSQIRCEDVDFESSKFD--PFLDLSLE--VNRAPSVRRALQHFTAPEVLDGPNKYRCPKNNKLVRAIKQITVHEPPNILTVHLKRFEFGSFGSKISKMVEYDLAMDLAPFMSSLGLTGKGQPSGSQMYDLYGVLVHQGHSVHSGHYYSFVRGP---TGLWYRCDDTSVGQVGERMVLAQQAYILFYIRRQPR 405          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1391.2869.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4U0UGE6_9PEZI8.810e-624.26USP domain-containing protein n=1 Tax=Friedmanniom... [more]
A0A250X3I7_9CHLO1.780e-523.94USP domain-containing protein n=1 Tax=Chlamydomona... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10coord: 144..451
e-value: 5.5E-27
score: 96.6
NoneNo IPR availablePANTHERPTHR21646FAMILY NOT NAMEDcoord: 78..443
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 151..429
e-value: 8.6E-13
score: 48.4
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 150..444
score: 18.774
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 148..445

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1391contigE-fasciculatus_F_contig1391:2431..7982 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1391.2869.1mRNA_E-fasciculatus_F_contig1391.2869.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1391 2431..7984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1391.2869.1 ID=prot_E-fasciculatus_F_contig1391.2869.1|Name=mRNA_E-fasciculatus_F_contig1391.2869.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=557bp
GKARNVDAVGPARRASAAVAARQRATATGTGKKTARAAAVVAAARLSSTL
AGEEDDEPCTSAAESGDEYLYEDDDDDDDDDQDLAQAAQPTPGYNEDEAT
AKAIQESSLEDALRKAQEACRRGDDPSPRGAGPILAPGACGGIARGKQKR
GIQNGGNTCYLGSLLQLVSIPSTSMGAAFVQLAKATDNDKRTKLPVTFKV
GNIADQVNSPPAATEGPLLGVHHPFIGADGYLGGGFATVRQQHCVDEAHC
RLFDRVREEATKAEFPVPPPLALSAVKSTTTIHCPGCQTSHDNLDEAPSI
RVSFADGAQKPATLQQLLEDTTQKETRDLAGCQCGAQITHASLKYHELPE
TLVVFVRRAAADGTKLDTPLKFGLTGTPLQDEVYDVKGIIVHDGERSDSG
HYSAYVPAEGDGTGWLHVNDSRVTEVGAGVVTDQNPAMFVMERQGRETAP
KVDAAAAVAAFLEEKSSGGAAGGGGAQAVSCPGENGTNSECSDSSNVFEL
AGRDSDEEWVPSSKDPARRVEHSHKKRGTATTAAAPPKRPRVRGGNSGKQ
PKTSVGA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain-like_cys_pep_sf
IPR028889USP_dom
IPR001394Peptidase_C19_UCH