mRNA_E-fasciculatus_F_contig1391.2869.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1391.2869.1 vs. uniprot
Match: A0A4U0UGE6_9PEZI (USP domain-containing protein n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UGE6_9PEZI) HSP 1 Score: 60.1 bits (144), Expect = 8.810e-6 Identity = 74/305 (24.26%), Postives = 122/305 (40.00%), Query Frame = 1
Query: 472 TCYLGSLLQLVSIPSTSMGAAFVQLAKATDNDKRTKLPVTFKV------GNIADQVNSPPAATEGPLL-----GVHHPFI-------GADGYLGGGFATVRQQHCVDEAHC-RLFDRVREEATKAEFP--VPPPLALSAVKSTTTIHCPGCQTSHDNLDEAPSIRVSF---------ADGAQKPATLQQLLEDTTQKETRDLAGCQCGAQITHASLKYHELPETLVVFVRRAA-----ADGTKLDTPLKFGL-TGTPLQDEVYDVKGIIVHDGERSDSGHYSAYVPAEGDGTGWLHVNDSRVTEV 1278
T LG+L + + ++S+ + + T + + K+ + G+ AD+V S LL G PF G G GG + + + C F ++ +AE P V +L V +T+T C + P + +S +G K LQ LL ++ T + +C ++ LPE LVV +RRA+ D TK+ T + L G L ++ YDV +++H G+ + SGHY+AY G W ++D T+V
Sbjct: 379 TSLLGALKDVETFGASSLHVNLLNVGTKTKSREMGKMKAAIRAAIQRDAGDDADRVRSHLHDVLHRLLDRNASGAVAPFFLQMAFAYGGTGTASGGLSLREEMSGDTQEDCVEFFQKLMNVLCEAEDPTAVDGLRSLFEVITTSTDVCEDGCIVDTGMTSTPEVSISHELFVPETTPVNG--KSHDLQTLLANSMTSSTEQVC-TKCKTGTVSRVKRFATLPEQLVVEIRRASFDRATGDQTKITTEVVLPLDAGIQLVEQQYDVVAVVMHRGQHTHSGHYTAY---RKQGAEWFLMDDEEATKV 677
BLAST of mRNA_E-fasciculatus_F_contig1391.2869.1 vs. uniprot
Match: A0A250X3I7_9CHLO (USP domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3I7_9CHLO) HSP 1 Score: 59.3 bits (142), Expect = 1.780e-5 Identity = 79/330 (23.94%), Postives = 132/330 (40.00%), Query Frame = 1
Query: 451 GIQNGGNTCYLGSLLQLV--SIPSTSMGAAFVQLAKATDNDKRTKLPVTFKVGNIADQVNSPPAATEGPLLGVHHPFIGADGYLGGGFATVRQQHCVDEAHCRLFDRVREEATKAEFPVPPPLALS--------AVKSTTTIHCPGCQTSHDNLDEAPSIRVSFADGAQKPATLQQLLEDTTQKETRDLAG---CQCGAQITHA--SLKYHELPETLVVFVRRA--AADGTKLDTPLKF-------------GLTGT--PLQDEVYDVKGIIVHDGERSDSGHYSAYVPAEGDGTG-WLHVNDSRVTEVGAGVVTDQNP-AMFVMERQGR 1338
G+QN GNTC++ S+LQ + + P + + V+ ND + + ++ +P A +G + F RQ+ + C L D + E K P PPP S A + + I C D P + +S + ++++ L+ T E D C ++ A + HE P L V ++R + G+K+ +++ GLTG P ++YD+ G++VH G SGHY ++V TG W +D+ V +VG +V Q +F + RQ R
Sbjct: 96 GLQNLGNTCFMNSVLQCLFHTPPLCELFMSDVRYGGGYPNDPVHMTQLLIQRAFSGPRIIAPSAHAKGLKI------------FNKKFRLGRQEDSHEFLRC-LLDAMHEALLKPFQPKPPPDLASTTLVYRIFAGRLRSQIRCEDVDFESSKFD--PFLDLSLE--VNRAPSVRRALQHFTAPEVLDGPNKYRCPKNNKLVRAIKQITVHEPPNILTVHLKRFEFGSFGSKISKMVEYDLAMDLAPFMSSLGLTGKGQPSGSQMYDLYGVLVHQGHSVHSGHYYSFVRGP---TGLWYRCDDTSVGQVGERMVLAQQAYILFYIRRQPR 405 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1391.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1391.2869.1 >prot_E-fasciculatus_F_contig1391.2869.1 ID=prot_E-fasciculatus_F_contig1391.2869.1|Name=mRNA_E-fasciculatus_F_contig1391.2869.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=557bp GKARNVDAVGPARRASAAVAARQRATATGTGKKTARAAAVVAAARLSSTLback to top mRNA from alignment at E-fasciculatus_F_contig1391:2431..7984+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1391.2869.1 ID=mRNA_E-fasciculatus_F_contig1391.2869.1|Name=mRNA_E-fasciculatus_F_contig1391.2869.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1391:2431..7984+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1391:2431..7984+ >mRNA_E-fasciculatus_F_contig1391.2869.1 ID=mRNA_E-fasciculatus_F_contig1391.2869.1|Name=mRNA_E-fasciculatus_F_contig1391.2869.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1391:2431..7984+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |