mRNA_E-fasciculatus_F_contig13632.2693.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A6H5JPD9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD9_9PHAE) HSP 1 Score: 356 bits (914), Expect = 2.010e-120 Identity = 185/192 (96.35%), Postives = 189/192 (98.44%), Query Frame = 1
Query: 4 MHIADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQGCENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRRKGARQDEIEKLPV 579
MHIADDGVRG+SASRL LLLLTLVNLPLIAAGVVIL LHWQDTDVCDVDHRRKWKWWALLSVVRM++ITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQGC+NPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQR KGARQDEIEKLPV
Sbjct: 158 MHIADDGVRGLSASRLSLLLLTLVNLPLIAAGVVILILHWQDTDVCDVDHRRKWKWWALLSVVRMMLITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQGCDNPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRLKGARQDEIEKLPV 349
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: D7FY42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY42_ECTSI) HSP 1 Score: 244 bits (623), Expect = 1.130e-80 Identity = 117/121 (96.69%), Postives = 121/121 (100.00%), Query Frame = 1
Query: 4 MHIADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQG 366
MHIADDGVRGM+ASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDV+HRRKWKWWALLSVVRM++ITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQG
Sbjct: 1 MHIADDGVRGMNASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVEHRRKWKWWALLSVVRMMLITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQG 121
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A7S3XQH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH4_HETAK) HSP 1 Score: 164 bits (414), Expect = 8.280e-47 Identity = 86/194 (44.33%), Postives = 127/194 (65.46%), Query Frame = 1
Query: 1 RMHIADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLL-QNQGCENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRRKGARQDEIEKLPV 579
RM++ +G+R ++ RL + L +VNLP + A V+L+LHW D VCD DHR +WKWWA ++ R+ V T +++ + V +R D + I + SN RN +D +GL+WFV+G+MWL Q + C+ SP+YQLC+ +++TY+HICLPC++ XXXXXXXX R++ LQ P R KGA Q I+KL +
Sbjct: 15 RMNVLQNGIREVNNRRLVVFLTLVVNLPQLVAAAVVLSLHWDDDAVCDADHRERWKWWAAVAAARLAVYTGLLVALYLVLLRRPRDAREVI--VLSNARNGVDALGLIWFVVGNMWLFGQTESCDGAGASPVYQLCVAMLLVTYLHICLPCLIXXXXXXXXXXXXXXXXRVLARLQDPMRGKGANQAAIDKLKI 206
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A7S2V5V5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5V5_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.070e-46 Identity = 89/192 (46.35%), Postives = 129/192 (67.19%), Query Frame = 1
Query: 1 RMHIADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLL-QNQGCENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRRKGARQDEIEKL 573
RM++ +R ++ +L +L+ LVN+P I A + +L+LHW DT CD + R++W+WWAL+S VRM + T V++V + R D + L SN+RN +D +GL+WFV+G+MWL Q++ C+NP SPIYQLC+ ++ITYIHICLPC++ XXXXXXXX R++ LQ P R KGA Q I++L
Sbjct: 82 RMNVLGTSMREVNNRKLVVLVTLLVNIPQIVAAIAVLSLHWGDTFACDPERRQRWRWWALISTVRMAIYTVVMVVLYFFTLHRPRDSREVA--LLSNLRNGVDALGLIWFVVGNMWLFGQSESCDNPGSSPIYQLCVAMLLITYIHICLPCLIXXXXXXXXXXXXXXXXRVLSRLQDPMRGKGANQAAIDRL 271
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A7S2DZB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZB6_9STRA) HSP 1 Score: 158 bits (399), Expect = 8.200e-44 Identity = 83/200 (41.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query: 1 RMHIADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQ-REEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQG------CENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRRKGARQDEIEKLPV 579
R+++ +D +R +S+SR+ + L L N P I A +V+L+LHW D VCD +HR KW+ WAL++ +RMV+ + + V ++DR + + N+RN LD GLVWF++G+MWL C P SPIY LCL ++ YIHICLPCI+ +L++PV XXXXXI ++ ++ P+ KGA + I+KLP+
Sbjct: 63 RVNVLNDSLREVSSSRIAVSALILFNFPQIVAAIVVLSLHWPDDSVCDAEHRLKWRVWALIATIRMVLHMVTIFLIIGVSRMVTQQDRQTRLLMILHNLRNLLDAAGLVWFLVGNMWLFGGSDEKVTTVCVRPTQSPIYNLCLAMVVFNYIHICLPCIVAILMIPVLCFXXXXXIHMLRWMRDPEEGKGASEAAIKKLPL 262
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: K8YR69_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YR69_NANGC) HSP 1 Score: 129 bits (323), Expect = 3.900e-32 Identity = 72/191 (37.70%), Postives = 113/191 (59.16%), Query Frame = 1
Query: 13 ADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQN--QGCENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRRKGARQDEIEKLPV 579
A VR + ++ L ++ +VN+P I A VVIL+ +W DT C+ KWK +AL++ +RM + V +R+ G+ + S+ RN LD GL+WFV+G+MWL + C +P SP+Y LC+ ++ I Y +CLPC+++++++PV XXXX IR++ +Q P R KGA I KLP+
Sbjct: 17 ALHNVREVRSASFALCVVLVVNIPQIIAAVVILSKYWHDT-TCEPSETTKWKTYALIAALRMFLYVSSVSALYRLNGRMPATTR--LMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFXXXXLIRILARIQDPMRGKGATPSMINKLPM 204
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A4D9DBP5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBP5_9STRA) HSP 1 Score: 125 bits (315), Expect = 8.640e-31 Identity = 68/171 (39.77%), Postives = 103/171 (60.23%), Query Frame = 1
Query: 73 VNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQN--QGCENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRRKGARQDEIEKLPV 579
VN+P I A VVIL+ +W DT C+ KWK +AL++ +RM + V +R+ G+ + S+ RN LD GL+WFV+G+MWL + C +P SP+Y LC+ ++ I Y +CLPC+++++++PV XXXX IR++ +Q P R KGA I KLP+
Sbjct: 76 VNIPQIIAAVVILSKYWHDT-TCEPSETTKWKTYALIAALRMFLYVSSVSALYRLNGRMPATTR--LMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFXXXXLIRILARIQDPMRGKGATPSMINKLPM 243
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A7S1U290_9STRA (Hypothetical protein n=5 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U290_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.100e-29 Identity = 70/210 (33.33%), Postives = 120/210 (57.14%), Query Frame = 1
Query: 1 RMHIADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVV-MVRWRVEGQREEDRNQAI------------DHLSSNMRNSLDIVGLVWFVIGHMWLLQNQGCENPRD-SPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQ---RRKGARQDEIEKLPV 579
R++ A++G R + +SR LL+ V +P IAAG+ +L +W D + CD++H KW+WWAL+SVVRM V+ M V+ +R R + D L+ ++ +D++GLVWF+IG++W+L + + S ++ LC+ +I++ YI ICLPC + + +PV +R M +Q + R+GA +D I+++P+
Sbjct: 30 RLNAAEEGWRRILSSRTLLLITMGVYVPQIAAGIGVLATNWNDPNACDLEHLLKWRWWALVSVVRMAAFLLVMTMDHVLVDEERSPLREFVLRTGGEEQLILWHDKLARG-KHLVDVLGLVWFIIGNLWVLSDDDSSPGQGKSALFILCVFFIVVYYIQICLPCAVAVAAIPVLCFCLPCLLRFMVRMQDAEAHAERRGAEEDVIDRIPI 238
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A7S2SC38_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC38_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.010e-23 Identity = 72/204 (35.29%), Postives = 112/204 (54.90%), Query Frame = 1
Query: 10 IADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRM----------VVITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQG----CENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRRKGARQDEIEKLPV 579
+ + VR ++S + +L + +P + AG ++L L+W + DVCD H+ KWK WA++++ RM V +TP+ D + + +N +D VGL+WF++G+MWL + G C +P SPIY L L +II Y+HICLPC++ +L XXXXXXXX+ ++ L+ GA IEKLP+
Sbjct: 62 VRSNLVREFTSSWSAVAMLAFLYVPQVIAGNIVLCLYWTNPDVCDRVHQLKWKIWAIVAMARMMFHLMTVTLIVALTPIA------------DPASRVMRYLNTAKNFVDGVGLLWFLLGNMWLFGDDGSSGTCHHPTQSPIYVLSLSMLIINYLHICLPCVVAILXXXXXXXXXXXXLNVLRYLRVADE-AGATAQAIEKLPL 252
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Match: A0A7S3LZ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ97_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.900e-23 Identity = 56/157 (35.67%), Postives = 86/157 (54.78%), Query Frame = 1
Query: 28 RGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHRRKWKWWALLSVVRMVVITPVVMVRWRVEGQREEDRNQAIDHLSS-----NMRNSLDIVGLVWFVIGHMWLLQNQG--CENPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPV 477
R +A+R + LL ++ P + A ++L +HW D DVCD H R+WK W+ + RM + E R+ I+H+ + NMRN L+ G +WF++G+MWL + C + SPIY L L II+ Y+ +C PCI+ +LL+PV
Sbjct: 50 RNDAAARGSVYLLFVIYGPQVLASFIVLGMHWNDPDVCDATHTRRWKLWSFFAACRMFAFIGLGCYV-------ERYRSWLIEHVEASNRVRNMRNLLEGCGFLWFIVGNMWLFGDDDHICHHAGRSPIYNLSLSLIILQYVQMCFPCIVAILLLPV 199 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13632.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13632.2693.1 >prot_E-fasciculatus_F_contig13632.2693.1 ID=prot_E-fasciculatus_F_contig13632.2693.1|Name=mRNA_E-fasciculatus_F_contig13632.2693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=192bp MHIADDGVRGMSASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVDHback to top mRNA from alignment at E-fasciculatus_F_contig13632:73..2653- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13632.2693.1 ID=mRNA_E-fasciculatus_F_contig13632.2693.1|Name=mRNA_E-fasciculatus_F_contig13632.2693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13632:73..2653- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13632:73..2653- >mRNA_E-fasciculatus_F_contig13632.2693.1 ID=mRNA_E-fasciculatus_F_contig13632.2693.1|Name=mRNA_E-fasciculatus_F_contig13632.2693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13632:73..2653- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |