mRNA_E-fasciculatus_F_contig13623.2690.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13623.2690.1
Unique NamemRNA_E-fasciculatus_F_contig13623.2690.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A6H5KKX3_9PHAE (M1PDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.590e-44
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 AKELREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            AKELREHDLL+YHTASPEIQEELWAWIVVRCLDLL RFGV+MLKNAH VETEEEVFEILLDYGRQTLDRFSSVVDSTSR
Sbjct:  135 AKELREHDLLSYHTASPEIQEELWAWIVVRCLDLLDRFGVEMLKNAHSVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 213          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: D7G793_ECTSI (Mannitol 1-phosphate dehydrogenase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G793_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 8.640e-44
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 AKELREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            AKELREHDLLAYHTASPEIQEELWAWIVVRCLDLL RFGV+MLKNAH VETEEEVFE+LLDYGRQTLDRFSSVVDSTSR
Sbjct:  282 AKELREHDLLAYHTASPEIQEELWAWIVVRCLDLLDRFGVEMLKNAHSVETEEEVFEVLLDYGRQTLDRFSSVVDSTSR 360          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A2Z4BWZ7_SACJA (Mannitol-1-phosphate dehydrogenase 2 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4BWZ7_SACJA)

HSP 1 Score: 134 bits (338), Expect = 1.400e-36
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 AKELREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            AKELREHDLLAY TASPEI+ ELWAW+VVRCL LL  FGVDMLK+AH +ETEEEVF++LLDYG Q LDRFSSVVDSTSR
Sbjct:  162 AKELREHDLLAYDTASPEIRAELWAWVVVRCLALLDEFGVDMLKSAHDLETEEEVFDVLLDYGGQALDRFSSVVDSTSR 240          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A0G4I719_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I719_9ALVE)

HSP 1 Score: 81.6 bits (200), Expect = 2.680e-16
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   16 EHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            EH+L+ + TA+   +E LWAW V RC+  +    VD++K+AH V T++EV EILL Y ++TLDRFS+V D+T+R
Sbjct:  416 EHELMTWETATEAEKERLWAWAVSRCILCVFEHDVDIIKSAHNVTTDKEVCEILLAYAKKTLDRFSTVKDTTTR 489          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A061RXH7_9CHLO (Mannitol 1-phosphate dehydrogenase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RXH7_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 1.120e-14
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   10 LREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            L E  LL Y  ASP+++E +WAW V + L L+   GVD++  AH  E++EE+ E +L   RQTL+RFSS+ D+TSR
Sbjct:  370 LPELPLLNYAEASPDVKESVWAWAVAQILVLMKEKGVDVMTQAHNAESDEELVEQMLAVARQTLERFSSIEDTTSR 445          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A0G4FY26_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FY26_9ALVE)

HSP 1 Score: 76.6 bits (187), Expect = 1.540e-14
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   16 EHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            +H+L+ +   + E +  +W W V RC+   H+  VD++K+AHGV ++EEV  ILL Y R TLDRFS+V D+TSR
Sbjct:  389 DHELVNWAQGTEEDRRMMWNWAVARCILCCHQHTVDVIKSAHGVTSDEEVCRILLAYARSTLDRFSTVRDTTSR 462          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A0G4EUF0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EUF0_VITBC)

HSP 1 Score: 69.7 bits (169), Expect = 4.230e-12
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   13 REHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            R HDLL   T   E Q E++AW V R L +L++    ++K+AHGV  +E+V +IL+DY  +TL RF+++ D+T R
Sbjct:  445 RSHDLLTSATLPEEKQREVYAWAVARVLMILNQHDKHVIKHAHGVLEDEKVAQILIDYATRTLQRFTTIPDTTGR 519          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A7S3SQ70_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SQ70_9SPIT)

HSP 1 Score: 67.0 bits (162), Expect = 3.770e-11
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    7 ELREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTL-DRFSSVVDSTSR 237
            E RE+ LL Y +   + Q    AW+ +R   L+ ++GV+ L   HGVET+E+V+++LLDYG Q L +RFS V D  SR
Sbjct:  449 EAREYVLLKYDSMPRKQQLMCEAWVTLRAAQLISKYGVENLMQWHGVETQEQVWDVLLDYGEQVLIERFSQVDDVVSR 526          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: A0A6P6S003_9EIME (uncharacterized protein LOC34620999 n=2 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6S003_9EIME)

HSP 1 Score: 66.6 bits (161), Expect = 5.140e-11
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   10 LREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            LR+  LL       + ++ +WAW+  RCL +L     +++K  H ++T+EEV E+LL YG++TL RFS+V D+  R
Sbjct:  497 LRQVPLLKEGEMVDKQKDIMWAWLAARCLHVLWEHDKEVIKRTHNIQTDEEVVEMLLTYGKKTLSRFSTVEDTAGR 572          
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Match: U6KQC9_EIMTE (Mannitol-1-phosphate dehydrogenase n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KQC9_EIMTE)

HSP 1 Score: 64.3 bits (155), Expect = 3.230e-10
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   10 LREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVETEEEVFEILLDYGRQTLDRFSSVVDSTSR 237
            LR   LL       + +E +WAW+  RCL +L     +++K  H ++T++EV  +LL+YG++TL RFS+V D+  R
Sbjct:  287 LRSVPLLKETEMQQQQKETMWAWLTARCLQVLWEHDKEVIKRTHNLKTDDEVVAMLLNYGKKTLARFSTVDDTAGR 362          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13623.2690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KKX3_9PHAE2.590e-4494.94M1PDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G793_ECTSI8.640e-4494.94Mannitol 1-phosphate dehydrogenase, partial n=1 Ta... [more]
A0A2Z4BWZ7_SACJA1.400e-3682.28Mannitol-1-phosphate dehydrogenase 2 n=1 Tax=Sacch... [more]
A0A0G4I719_9ALVE2.680e-1650.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A061RXH7_9CHLO1.120e-1448.68Mannitol 1-phosphate dehydrogenase n=1 Tax=Tetrase... [more]
A0A0G4FY26_9ALVE1.540e-1447.30Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4EUF0_VITBC4.230e-1244.00Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3SQ70_9SPIT3.770e-1144.87Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A6P6S003_9EIME5.140e-1139.47uncharacterized protein LOC34620999 n=2 Tax=Cyclos... [more]
U6KQC9_EIMTE3.230e-1038.16Mannitol-1-phosphate dehydrogenase n=1 Tax=Eimeria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13623contigE-fasciculatus_F_contig13623:152..1068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue3.3e-36
Seed eggNOG ortholog2880.D7G793
EggNOG OGs2BX5V@1,2S2EN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927859.598154-CDS-E-fasciculatus_F_contig13623:151..2831622927859.598154-CDS-E-fasciculatus_F_contig13623:151..283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13623 152..283 +
1695995726.7358768-CDS-E-fasciculatus_F_contig13623:151..2831695995726.7358768-CDS-E-fasciculatus_F_contig13623:151..283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13623 152..283 +
1622927859.609298-CDS-E-fasciculatus_F_contig13623:960..10681622927859.609298-CDS-E-fasciculatus_F_contig13623:960..1068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13623 961..1068 +
1695995726.746285-CDS-E-fasciculatus_F_contig13623:960..10681695995726.746285-CDS-E-fasciculatus_F_contig13623:960..1068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13623 961..1068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13623.2690.1prot_E-fasciculatus_F_contig13623.2690.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13623 152..1068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13623.2690.1

>prot_E-fasciculatus_F_contig13623.2690.1 ID=prot_E-fasciculatus_F_contig13623.2690.1|Name=mRNA_E-fasciculatus_F_contig13623.2690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
AKELREHDLLAYHTASPEIQEELWAWIVVRCLDLLHRFGVDMLKNAHGVE
TEEEVFEILLDYGRQTLDRFSSVVDSTSR*
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mRNA from alignment at E-fasciculatus_F_contig13623:152..1068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13623.2690.1 ID=mRNA_E-fasciculatus_F_contig13623.2690.1|Name=mRNA_E-fasciculatus_F_contig13623.2690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=917bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13623:152..1068+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAAGGAGCTGAGGGAGCACGACCTGCTGGCCTACCACACGGCGTCTCC GGAGATCCAGGAGGAGCTGTGGGCGTGGATCGTGGTCCGGTGCCTCGACC TGCTCCACCGCTTCGGGGTAGACATGCTCAAGGTGCGCGTGTGCTGATTG TCGCTGTAGGGCGTTGTTTTTGCTTTCGTTGACAGTGTTGCGGGGGGCGG ACGCATGTTTGGCCTGCCTTGGTTGCTAGACCATTGCCACGCATCCTCGG GAGGACGGGGCTTGTTCTTCCAGGACCGGCCAATCGCTCCTCCCCACTTT TGCCAAAGGTGGCTAAAAAAAATGTCCCTACAAGCCGCTCCATCTTACCA ATATCACTTCCCGCCTTTTCAGCCCGTGGATGGACGGGCCTTGTCACCCA CAGGTAGCGCTATAAACCTCTTTCATCAGCTGAAGCGGGGACAATGTATC TAGAGAACGTATTTTTTTGTTTCTGTTGTTTCGTTTTTTTTTACCCTCTG CCTATTACCGACGAAATCCGTTGATTCTCAGCATAACAGCAGACAACGGT TGACGTGCAAACGGAACGAGTGCTGAGCCTAGCTTGTGGCATGTTATCCC TGAACACGCACTGACTTTTGGTCGTTCTTCGCTCCGCCCGTCCCGTCCCG TCCCGCCCTATACTGTCCCGTCCCTTCCGTGTGATGCGCCGTCCTTCCGC ACCACGCGTTGGTGTTTTTCTTTTTTTGTTCGCGCTTCTGCTGCTGCTGC GGCGGCGGCTGGGTTTTAACCGCTGCGTCGCGGTAATTTTCAACCTTGGG GGCGAGCAGAATGCGCACGGTGTCGAGACCGAGGAAGAGGTGTTCGAGAT TCTTCTCGACTACGGCCGGCAAACTCTTGACCGGTTCTCGAGCGTCGTCG ACTCCACCAGCAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13623:152..1068+

>mRNA_E-fasciculatus_F_contig13623.2690.1 ID=mRNA_E-fasciculatus_F_contig13623.2690.1|Name=mRNA_E-fasciculatus_F_contig13623.2690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13623:152..1068+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAAGGAGCTGAGGGAGCACGACCTGCTGGCCTACCACACGGCGTCTCC
GGAGATCCAGGAGGAGCTGTGGGCGTGGATCGTGGTCCGGTGCCTCGACC
TGCTCCACCGCTTCGGGGTAGACATGCTCAAGGCGAAGGAGCTGAGGGAG
CACGACCTGCTGGCCTACCACACGGCGTCTCCGGAGATCCAGGAGGAGCT
GTGGGCGTGGATCGTGGTCCGGTGCCTCGACCTGCTCCACCGCTTCGGGG
TAGACATGCTCAAGAATGCGCACGGTGTCGAGACCGAGGAAGAGGTGTTC
GAGATTCTTCTCGACTACGGCCGGCAAACTCTTGACCGGTTCTCGAGCGT
CGTCGACTCCACCAGCAGGTGAAATGCGCACGGTGTCGAGACCGAGGAAG
AGGTGTTCGAGATTCTTCTCGACTACGGCCGGCAAACTCTTGACCGGTTC
TCGAGCGTCGTCGACTCCACCAGCAGGTGA
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