mRNA_E-fasciculatus_F_contig1361.2684.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1361.2684.1
Unique NamemRNA_E-fasciculatus_F_contig1361.2684.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: D7FSP6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP6_ECTSI)

HSP 1 Score: 480 bits (1236), Expect = 1.450e-162
Identity = 241/248 (97.18%), Postives = 246/248 (99.19%), Query Frame = 3
Query:    3 EHEWAERASGSGKEDTAVIQFHSLQEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEV 746
            EHEWAERA+GSGKEDTAVIQFHSLQEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDL+GVR+VLLPFT KQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVM+PLCNVDGVASVLFTKRSG MRAYKNDVCFPGGKVDIGQDQHII+TAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEV
Sbjct:  247 EHEWAERAAGSGKEDTAVIQFHSLQEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLSGVRRVLLPFTAKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSGNMRAYKNDVCFPGGKVDIGQDQHIIETAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEV 494          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A6H5JIG8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG8_9PHAE)

HSP 1 Score: 477 bits (1227), Expect = 2.390e-161
Identity = 240/248 (96.77%), Postives = 244/248 (98.39%), Query Frame = 3
Query:    3 EHEWAERASGSGKEDTAVIQFHSLQEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEV 746
            EHEWAERASGSGKEDTAVIQFHSL+EAALRRFEG GVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDL+GVRKVLLPFT KQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVM+PLCNVDGVASVLFTKRSG +RAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLS EQIHPNPDEV
Sbjct:  237 EHEWAERASGSGKEDTAVIQFHSLKEAALRRFEGFGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLSGVRKVLLPFTAKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSGNLRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSLEQIHPNPDEV 484          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A4D9DAL0_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAL0_9STRA)

HSP 1 Score: 235 bits (599), Expect = 5.550e-70
Identity = 126/245 (51.43%), Postives = 164/245 (66.94%), Query Frame = 3
Query:   18 ERASGSGKEDTAVIQFHSLQEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEVRE 752
            E+ S + K  TA  +  SL   A  +F+ LGVI+  K  D+  ++ ++T PALAA LRDRE  L  CA LLE G+L  + +VL P+  + +   RR    LDL   G T  H+  LRK LQR PR +T     RASV+IPLCNV+GVASVLF +RS  +R++KN VCFPGG V+   D +II+T++REM EEIG    SVDVLGVLRCDWSEV  + G+ VTPVVGFLG+L+++++ PNP EV E
Sbjct:   24 EQMSANEKSHTAATENKSLHSHA--QFKSLGVIEPSKDLDLQLMITNYTLPALAAGLRDREETLQFCARLLEDGNLEQLERVLHPYQAELITRRRRKTRSLDLAG-GLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRSPFVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTEKELSPNPKEVAE 265          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A7S2USV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USV2_9STRA)

HSP 1 Score: 229 bits (585), Expect = 4.480e-67
Identity = 113/219 (51.60%), Postives = 161/219 (73.52%), Query Frame = 3
Query:   90 RRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEV 746
            R+  GLGVI  DK +D+  LV+++TAPALA+ALRDRE  LH+ A LLE  +L  +RK+L PF    +   R     ++L  EGF   H++ +RK L R+PR ++    +RA+V++ LCNVDGV S+LF+KRS  + ++KN+VCFPGG VD  QD ++++T +RE+ EEIGI +++V++LGVLRCDW EV S++GVAVTPVVGF+ +LS +++ PNPDEV
Sbjct:   98 RKRSGLGVISPDKTQDLDLLVKNYTAPALASALRDREEVLHVAAQLLESEELDELRKLLRPFHHSNLERHRTKKRDMNLS-EGFQAKHLHMIRKYLHRMPRQISRSASRRAAVLLTLCNVDGVPSILFSKRSDKVTSHKNEVCFPGGHVD-EQDDNVVETCLREVREEIGIPDTTVEILGVLRCDWGEVESIVGVAVTPVVGFIDDLSLKKLKPNPDEV 314          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A7S3Y7X1_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7X1_9EUKA)

HSP 1 Score: 219 bits (558), Expect = 9.840e-63
Identity = 117/237 (49.37%), Postives = 163/237 (68.78%), Query Frame = 3
Query:   39 KEDTAVIQFHSLQEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQI-HPNPDEV 746
            KE   + +F  L  +A++   G GVI EDKA D+  LV++FTAPALAAALRDRE  LH+CA LLE+  +  + KVL PF   +++E R    ++ L  EGF   H+Y +RK L R+PR +    E+RASV++PLCN  GVA +LF +RS T+R++K+ VCFPGG VD   D +I++T +REM EE+GI ++  DV GVLRCDW  +A ++GV+VTPVVG++G++      + NPDEV
Sbjct:   90 KEKRKMDEFTGLDLSAIK---GYGVIHEDKARDLKHLVDNFTAPALAAALRDREETLHICATLLEEDRMDELHKVLRPFHTTKISERRLKRRKMFLH-EGFKSEHIYMIRKYLHRMPRQLPRYAEKRASVILPLCNSQGVACLLFQRRSDTVRSHKSQVCFPGGVVDNRLDANIVETCLREMHEEMGI-DAVQDVCGVLRCDWGTIAKIVGVSVTPVVGWMGDIEDYDFSNMNPDEV 321          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A7S3MB31_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB31_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.100e-61
Identity = 107/207 (51.69%), Postives = 146/207 (70.53%), Query Frame = 3
Query:  132 EDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEVRE 752
            +DI+ LV++FTAPALA ALRDRE  L   A L   G+   ++++L+PF  + V   R     LDL  +GFT+  +  L++ L R+PRHV    E+RASV+IPLCNV+GVASVLF +RS  +R +K  VCFPGG +D G D  IIQT++REM EE+GI    ++VLG+LRC+W+EVAS+ G+AVTPV+GF+G L+   + PN DEV +
Sbjct:    4 DDINVLVQNFTAPALAEALRDREITLQRAATLFFSGETEELKELLVPFLDESVERRRLRHHHLDLS-KGFTRKEIVILQRYLHRMPRHVFHNAERRASVIIPLCNVNGVASVLFERRSMKVRTHKQQVCFPGGMLDEGVDSTIIQTSLREMEEELGIPREKIEVLGILRCNWNEVASMTGIAVTPVIGFIGELNDLVLTPNSDEVEQ 209          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A482SUV1_9ARCH (CoA pyrophosphatase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUV1_9ARCH)

HSP 1 Score: 208 bits (529), Expect = 2.760e-59
Identity = 102/216 (47.22%), Postives = 145/216 (67.13%), Query Frame = 3
Query:  105 LGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEVRE 752
            +G+    +++DI  LV +FTAPALA ALRDRE  L   A L +QGD   ++ +L PF  K + +SR      DL   GF++  +  ++  L R+PR+V   +E+RASV+IPLCNV G+ S+LF +RS T+R +K  VCFPGG V+ G D  +I+T +REM EE+G+     +VLG+LRC+W+EVAS+ G+AVTPVVG++G L    + PN DEV +
Sbjct:   85 VGIFHSAESDDIQELVNNFTAPALATALRDREDILQNAALLADQGDFERLKNLLFPFLKKNIEQSRMRNFSFDLS-NGFSRKALLLIQGYLHRMPRYVYHGSERRASVVIPLCNVQGIPSILFERRSATVRTHKQQVCFPGGMVEYGVDASVIETCLREMEEELGVPSDKTEVLGILRCNWNEVASMTGIAVTPVVGYIGELKDITLKPNADEVEK 299          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A7S0DGZ8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGZ8_9EUKA)

HSP 1 Score: 204 bits (520), Expect = 1.770e-58
Identity = 106/207 (51.21%), Postives = 145/207 (70.05%), Query Frame = 3
Query:   90 RRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNL 710
            R  +G GV+ EDK  D+  LV++FTAPALAAALRDRE  LH+C+ LLE+G    +RKVL PF   +++E RR   ++ L  +GF   H+Y +RK L RLPR +    E+RASVM+PLCN  GVA VLF  RS  +R++K+ VCFPGG VD  +D +I++T +RE+ EE+GI +   DV GVLR DW  +  L+GV+VTPVV ++G++
Sbjct:   99 RSIKGYGVVFEDKRRDLKHLVDNFTAPALAAALRDREETLHICSTLLEEGREEELRKVLRPFHTTKISERRRKRRKMFLH-DGFQSEHVYMIRKYLHRLPRQLPRYAEKRASVMLPLCNSQGVACVLFQYRSDNVRSHKSQVCFPGGIVDNRKDSNIVETCLRELEEEMGISQVR-DVCGVLRLDWGTILKLVGVSVTPVVAWMGDI 303          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: B8CB77_THAPS (Nudix hydrolase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB77_THAPS)

HSP 1 Score: 209 bits (532), Expect = 1.420e-57
Identity = 106/217 (48.85%), Postives = 146/217 (67.28%), Query Frame = 3
Query:  105 LGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGR-LDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEVRE 752
            LGV++ED  ED+  L+E++T  ALA+ALRDRE  L +CA+LL    +  V K+L P+  K + + R + G+ LD    GF    +  +RK L R+ R V+T   +RA V++PLCNVDGV  +LF KRS  +RA+ ++VC PGG V  G D+ I+QT +REM EEIGI  ++  VLGVLRC+W EV  L+GVAVTPVV ++G +   Q++PN DEV E
Sbjct:  277 LGVLREDPHEDMRLLLENYTVAALASALRDREDTLQLCANLLSSNRIEEVSKILRPYEPKYIHQRRHSKGKMLDFRRGGFDNQSIELIRKGLNRMHRRVSTAHSKRAGVVLPLCNVDGVPCILFEKRSRDLRAHPDEVCLPGGMVSEGGDKSIVQTCLREMEEEIGIEHNAASVLGVLRCNWGEVHHLVGVAVTPVVCYIGQVGMSQLNPNSDEVAE 493          
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Match: A0A7S3V6J2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6J2_9STRA)

HSP 1 Score: 199 bits (505), Expect = 8.240e-55
Identity = 108/228 (47.37%), Postives = 148/228 (64.91%), Query Frame = 3
Query:   75 QEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEI-GILESSVDVLGVLRCDWSEVASLIGVAVTPVVGFLGNLSQEQIHPNPDEVRES 755
            +E    R   LGV++ED  ED+  L+E++T PALA+ALRDRE  L +CA L  +  +  +  +L PF  K V + R +   LDL  +GF   ++  +RK L R+PR V+    +RA V++PLCNV+GV  VLF KRS  +RA+ ++VC PGG V    D+ I+ T +REM EEI GI E++V  LGVLRC+W EV  L+GVAVTPVV ++G +   QI PN DEV E+
Sbjct:  147 REGGRMRERKLGVLREDPKEDMRLLIENYTVPALASALRDREDVLQLCATLFAEQKMEELSMILRPFERKYVEKRRLSKINLDLT-KGFDSANIQQVRKGLNRMPRRVSQAHSRRAGVVLPLCNVNGVPCVLFEKRSAQLRAHADEVCLPGGMVSAASDKSIVATCLREMDEEIEGIGEATV--LGVLRCNWGEVHHLVGVAVTPVVCYIGEIGDSQISPNSDEVAEA 371          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1361.2684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSP6_ECTSI1.450e-16297.18Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5JIG8_9PHAE2.390e-16196.77Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A4D9DAL0_9STRA5.550e-7051.43Nudix hydrolase domain-containing protein n=3 Tax=... [more]
A0A7S2USV2_9STRA4.480e-6751.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y7X1_9EUKA9.840e-6349.37Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S3MB31_9STRA1.100e-6151.69Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SUV1_9ARCH2.760e-5947.22CoA pyrophosphatase (Fragment) n=1 Tax=archaeon Ta... [more]
A0A7S0DGZ8_9EUKA1.770e-5851.21Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
B8CB77_THAPS1.420e-5748.85Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S3V6J2_9STRA8.240e-5547.37Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1361contigE-fasciculatus_F_contig1361:97..3555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.5
Seed ortholog evalue6.5e-94
Seed eggNOG ortholog2880.D7FSP6
KEGG koko:K18665
EggNOG free text desc.CoA pyrophosphatase activity
EggNOG OGsCOG0494@1,KOG3069@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-03_003030.1
Exons6
Model size1477
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1361.2684.1prot_E-fasciculatus_F_contig1361.2684.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1361 598..3046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927858.247158-UTR-E-fasciculatus_F_contig1361:96..2181622927858.247158-UTR-E-fasciculatus_F_contig1361:96..218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1361 97..218 +
1695995726.2650914-UTR-E-fasciculatus_F_contig1361:96..2181695995726.2650914-UTR-E-fasciculatus_F_contig1361:96..218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1361 97..218 +
1622927858.2577941-UTR-E-fasciculatus_F_contig1361:507..5971622927858.2577941-UTR-E-fasciculatus_F_contig1361:507..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1361 508..597 +
1695995726.2779624-UTR-E-fasciculatus_F_contig1361:507..5971695995726.2779624-UTR-E-fasciculatus_F_contig1361:507..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1361 508..597 +
1622927858.4286983-UTR-E-fasciculatus_F_contig1361:3046..35551622927858.4286983-UTR-E-fasciculatus_F_contig1361:3046..3555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1361 3047..3555 +
1695995726.3616996-UTR-E-fasciculatus_F_contig1361:3046..35551695995726.3616996-UTR-E-fasciculatus_F_contig1361:3046..3555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1361 3047..3555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927858.2682126-CDS-E-fasciculatus_F_contig1361:597..6211622927858.2682126-CDS-E-fasciculatus_F_contig1361:597..621Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 598..621 +
1695995726.2928703-CDS-E-fasciculatus_F_contig1361:597..6211695995726.2928703-CDS-E-fasciculatus_F_contig1361:597..621Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 598..621 +
1622927858.2804089-CDS-E-fasciculatus_F_contig1361:843..10251622927858.2804089-CDS-E-fasciculatus_F_contig1361:843..1025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 844..1025 +
1695995726.304581-CDS-E-fasciculatus_F_contig1361:843..10251695995726.304581-CDS-E-fasciculatus_F_contig1361:843..1025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 844..1025 +
1622927858.2900217-CDS-E-fasciculatus_F_contig1361:1495..16101622927858.2900217-CDS-E-fasciculatus_F_contig1361:1495..1610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 1496..1610 +
1695995726.3198636-CDS-E-fasciculatus_F_contig1361:1495..16101695995726.3198636-CDS-E-fasciculatus_F_contig1361:1495..1610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 1496..1610 +
1622927858.3072534-CDS-E-fasciculatus_F_contig1361:2038..21191622927858.3072534-CDS-E-fasciculatus_F_contig1361:2038..2119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 2039..2119 +
1695995726.332025-CDS-E-fasciculatus_F_contig1361:2038..21191695995726.332025-CDS-E-fasciculatus_F_contig1361:2038..2119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 2039..2119 +
1622927858.411978-CDS-E-fasciculatus_F_contig1361:2692..30461622927858.411978-CDS-E-fasciculatus_F_contig1361:2692..3046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 2693..3046 +
1695995726.3417618-CDS-E-fasciculatus_F_contig1361:2692..30461695995726.3417618-CDS-E-fasciculatus_F_contig1361:2692..3046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1361 2693..3046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1361.2684.1

>prot_E-fasciculatus_F_contig1361.2684.1 ID=prot_E-fasciculatus_F_contig1361.2684.1|Name=mRNA_E-fasciculatus_F_contig1361.2684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=252bp
MCAHLLEQGDLAGVRKVLLPFTGKQVAESRRALGRLDLEPEGFTKTHMYA
LRKVLQRLPRHVTTLTEQRASVMIPLCNVDGVASVLFTKRSGTMRAYKND
VCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSVDVLGVLRCDWSEVAS
LIGVAVTPVVGFLGNLSQEQIHPNPDEVRESERSHHSRGQGFRYLFFVFS
NHQYCCREHSAGIGPEHCSFRCGTPTVDVRVADPLGCSARKISQVRCKIA
L*
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mRNA from alignment at E-fasciculatus_F_contig1361:97..3555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1361.2684.1 ID=mRNA_E-fasciculatus_F_contig1361.2684.1|Name=mRNA_E-fasciculatus_F_contig1361.2684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3459bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1361:97..3555+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGCACGAGTGGGCGGAGAGGGCGTCAGGATCGGGAAAAGAGGACACT GCCGTCATTCAGTTTCATTCCCTTCAGGAGGCCGCGCTCCGCCGCTTTGA GGGCTTAGGAGTGATCAAAGAGGTGAGGGAGAGGTCGTGATTGGGCGTGA TGGGAGAGAGTTAAGGTTTTTGAGCGGCTCATCGGTGTTTGCGGTCGCGC GTCGTCGCGTCCTGTGGTGACAAGGCAGCGACCTTATTCCCCGCACCACA CCACACCACACCCCGATTGATCCCGACCTTCTGTGTTTATCGCTTTTGAT GGTGTTGATACGTCCCAACCTGCTTTGCTGTTCCTATCCCTGCCACCGGA GAGTCCCACACTTTCAAGAACTCTCATCTGTTGTCCCATTCCCCGACATG GACAATACCAGGACAAGGCCGAAGACATCCACACGCTGGTGGAGAGCTTC ACAGCCCCCGCGCTTGCGGCCGCTCTGCGCGACCGGGAGACCGCCCTCCA TATGTGCGCTCATCTGCTGGAACAGGTGAGAGGTACTGCTGCAGGGGCAA AAAGAAAGAAAGAAAGCGACTTGATGCCCCTGTGTTGCTTTTTTCCGACG AAGCAGGCAGAAGGGAGAGCTGCCCCTTGGTTGGACAACAGCAGCAAACT GTGCGTCCTAGTTTGTATCGCCGCCAGTCCCTCGAAGCCGCTTGAGTCGC TAAACATGGGCGGTTCTGGCGTAAAATTTTTTTTTCTTTTTCTGCAGGGA GATCTGGCCGGTGTGCGGAAGGTCCTCCTCCCCTTCACGGGGAAGCAGGT GGCGGAGAGCCGCCGGGCCCTGGGTCGGCTGGACCTCGAGCCCGAGGGCT TCACAAAGACCCACATGTACGCGCTCCGGAAGGTGCTCCAGCGGCTGCCG CGTCATGTCACCACGCTCACCGAGCAGAGGTATCTATCTATCTGTCTGCG CTGGACACAGCGGGTGGTACGGAGTAAATGTATAGCGGTGGCGATTCGGT TAGGTTAGATTGGTTTGCTGGGTGGTGATTGGATGGTGGCGGGTGTCAGT GATAGCGTGAATACGGAATGATAACATGATGCGGGACGTTTGGAGAGCAC GATACGGAGAGAGGGTTCATATCGTGGATTTGACGGGTTACGGCCCCGGT GTTCCCACCGAAGTGTTTCTGTCCGCTCCCGTCGTTTGGTTGGGGTTCCC CCTCGTCCTTATCGGATATGATGACGGCGCCGTCGATAGTTTGCGTTGTC GGTGTGCGTCTTTTTTTATCGGCAAGTCATTTGTGCTGTTTCTCCACTGC CTCCCCCCTTCCCTCTTCTTCAATCCCGCCCCTTACCCCCCTTCCCTTCC TCCCCCCTTTGCACATTTCCTGGACCAACTCGCGTCCCTCCCCAACAAGG GCTTCCGTGATGATTCCGCTGTGCAACGTGGACGGGGTGGCGTCCGTGCT CTTCACCAAGCGCTCGGGTACCATGAGGGCCTACAAGAACGACGTCTGCT TCCCTGGTGGCAAGGTGAAGAGGGGGTTGTGGTTCGGGCCTTGTGTAATG ACGACGCTTCCGAGTACTGCTACACCCCACGCGCGGCCCGGAAACGAGAA CAGTAGTCGAGGCAGCCCTTGCCGAGCGACGGAAGGCACGCCGGGAGACG ACAATATGGCCGTGGTCGCGAAATAAGTCTATTGTTTATGTACGCCACTC TTGGAATCCGACGAACTCGTTAAAATCGGCCAGTGGAGTTCGGCATGGCT ATAGATTGCGGCCACGTACGTGTTGAAGACCCGTAACTTTACGGCAATGC ACCGATAAGCACACTTCCCATGCCGTGCTAGCTGGTGACAAATGCTGACA CGCTTGGTTATGTATGGAAAATATAACGTGCTGACGTTGCCTTTAATTTA CTACGTCTGTGTGCGAAACCACGCCCTCCTGCGAAAATCTAGGTTGACAT CGGCCAGGACCAACACATCATCCAGACGGCTGTGAGAGAGATGGGGGAGG AGATCGGCATCCTCGAGTCTTCGGTGAGACAGACCTGTTGCAGTCCCCGC GATCATGCAGTACCACCCCAAAATATGCAGGAAGTGAACGCGCTCCCCGA GGCAAACCAAATGCCGTGCTTGTCGAAAAGGCTGGCGTGGGATGGTACGT CTCGATCGTGTGGTATCTTCCGTGACGCACCCCAATGCGGTACATGGAAA AGCTGGAGGATTCGGCGTTCGCCCGGAGGAGGAAGTTTTTTTTTTTTCGC CATCCATGTGCCCATCTCTGACTACTACAGCTTTTTTTTCGTGTCGGCAC GACAGCTAACCTACGGTATGGTTTTCGCGAATCGCCGTCTCCCCACGTAC GGCGCCTTGGGCGGGAAGAACACCTCGCGACATGCCATCCGCGAACCCGT CTCTATCATTAGAAACGCCGGCCAACACAGCATACTATTATAGCCGAAAT AATTCAGGCTGCTTTGATATGCTTTGTGCGCCTTTTCGGTGTGAGGGTGC CTGTGAACCGTGAAGTGGCTATCCTTGCTGGTACCCCGCACGTCCGAGTC TCAAAGTCCGAAACCACACAAAATCTATTTTTTCTTTATTTCCAAGGTTG ACGTGCTCGGAGTCCTTCGCTGCGACTGGTCCGAGGTGGCTTCCCTGATC GGCGTAGCGGTCACCCCCGTGGTGGGCTTCTTGGGGAACCTGTCTCAGGA GCAGATCCACCCTAATCCCGACGAGGTAAGAGAGAGCGAACGAAGCCATC ATAGCCGCGGGCAGGGCTTCCGGTACCTGTTTTTTGTGTTCAGCAACCAC CAGTACTGCTGTCGAGAGCATAGTGCGGGTATCGGTCCGGAGCATTGCTC CTTCCGTTGCGGCACGCCGACGGTCGATGTTCGTGTTGCAGACCCTCTAG GTTGTTCAGCGCGGAAAATATCCCAGGTGCGATGTAAAATCGCACTGTAG TAGAATTTCGGCGGGGAAAACACTGCGTGCGATTTTTGACGGAGAAACAC GGCACGTGCTTCCTTTCCCCGGTGGCCGTCTCGTTTCGTACGTCGTTGTT TTTGTCTCGGGTGAACACTTAGAAGACCCAAACCCCGACGTGCTGATAGC GCGCCCTGCACCTCCCGCACACCGGCCGAATGCTTCGCTTTGGCTTTCGT TGATTTGCATGCGACAGAAGTAGGCTTGAGCGTTGTGCGGATTTGGGGAC GGTGTGGCAAAGCCCTGTCTGCCTCGCAGCGAAAGTGTGGCACGGGTGAA GCACACAGCCCATCGCGGGGTGTACCCTTTTGCCCTCCGCGCTATCCTTC GTCCGCGCCGTAATTCGGTCAAAACTTTCGAGCCTCGTGCACAGGGATAG GCTACACGACATGAGTTTAGGACCATCGGTACTGCCTGCGTGCAACGAGT TTTGGAAGAAACGAGAAACGTGCATTATGATTCCATGACCTGCGGGGTTA CACTGCCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1361:97..3555+

>mRNA_E-fasciculatus_F_contig1361.2684.1 ID=mRNA_E-fasciculatus_F_contig1361.2684.1|Name=mRNA_E-fasciculatus_F_contig1361.2684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1512bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1361:97..3555+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCGCTCATCTGCTGGAACAGATGTGCGCTCATCTGCTGGAACAGGG
AGATCTGGCCGGTGTGCGGAAGGTCCTCCTCCCCTTCACGGGGAAGCAGG
TGGCGGAGAGCCGCCGGGCCCTGGGTCGGCTGGACCTCGAGCCCGAGGGC
TTCACAAAGACCCACATGTACGCGCTCCGGAAGGTGCTCCAGCGGCTGCC
GCGTCATGTCACCACGCTCACCGAGCAGAGGGAGATCTGGCCGGTGTGCG
GAAGGTCCTCCTCCCCTTCACGGGGAAGCAGGTGGCGGAGAGCCGCCGGG
CCCTGGGTCGGCTGGACCTCGAGCCCGAGGGCTTCACAAAGACCCACATG
TACGCGCTCCGGAAGGTGCTCCAGCGGCTGCCGCGTCATGTCACCACGCT
CACCGAGCAGAGGGCTTCCGTGATGATTCCGCTGTGCAACGTGGACGGGG
TGGCGTCCGTGCTCTTCACCAAGCGCTCGGGTACCATGAGGGCCTACAAG
AACGACGTCTGCTTCCCTGGTGGCAAGGGCTTCCGTGATGATTCCGCTGT
GCAACGTGGACGGGGTGGCGTCCGTGCTCTTCACCAAGCGCTCGGGTACC
ATGAGGGCCTACAAGAACGACGTCTGCTTCCCTGGTGGCAAGGTTGACAT
CGGCCAGGACCAACACATCATCCAGACGGCTGTGAGAGAGATGGGGGAGG
AGATCGGCATCCTCGAGTCTTCGGTTGACATCGGCCAGGACCAACACATC
ATCCAGACGGCTGTGAGAGAGATGGGGGAGGAGATCGGCATCCTCGAGTC
TTCGGTTGACGTGCTCGGAGTCCTTCGCTGCGACTGGTCCGAGGTGGCTT
CCCTGATCGGCGTAGCGGTCACCCCCGTGGTGGGCTTCTTGGGGAACCTG
TCTCAGGAGCAGATCCACCCTAATCCCGACGAGGTAAGAGAGAGCGAACG
AAGCCATCATAGCCGCGGGCAGGGCTTCCGGTACCTGTTTTTTGTGTTCA
GCAACCACCAGTACTGCTGTCGAGAGCATAGTGCGGGTATCGGTCCGGAG
CATTGCTCCTTCCGTTGCGGCACGCCGACGGTCGATGTTCGTGTTGCAGA
CCCTCTAGGTTGTTCAGCGCGGAAAATATCCCAGGTGCGATGTAAAATCG
CACTGTAGGTTGACGTGCTCGGAGTCCTTCGCTGCGACTGGTCCGAGGTG
GCTTCCCTGATCGGCGTAGCGGTCACCCCCGTGGTGGGCTTCTTGGGGAA
CCTGTCTCAGGAGCAGATCCACCCTAATCCCGACGAGGTAAGAGAGAGCG
AACGAAGCCATCATAGCCGCGGGCAGGGCTTCCGGTACCTGTTTTTTGTG
TTCAGCAACCACCAGTACTGCTGTCGAGAGCATAGTGCGGGTATCGGTCC
GGAGCATTGCTCCTTCCGTTGCGGCACGCCGACGGTCGATGTTCGTGTTG
CAGACCCTCTAGGTTGTTCAGCGCGGAAAATATCCCAGGTGCGATGTAAA
ATCGCACTGTAG
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