mRNA_E-fasciculatus_F_contig1357.2656.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1357.2656.1
Unique NamemRNA_E-fasciculatus_F_contig1357.2656.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: D7FS74_ECTSI (Ribonuclease Z n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS74_ECTSI)

HSP 1 Score: 1369 bits (3543), Expect = 0.000e+0
Identity = 801/982 (81.57%), Postives = 824/982 (83.91%), Query Frame = 1
Query:   61 MKNEDLIQSYCQVVGTGDDGSSPCLIVSVEKAPRYNGGEPTENKILRRYLFNVGEGTQRFCGEAGVKLAKVNKLFLTGTGAEEHAGLSGLILTLSALGSPALEVFGPTGVDKLVEGLQAFGPRVGKCPAVSPMPLPLGTGESQCSYVLGDEHMEVRCGLVDPARAQSSKDVVTVDSSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGDERVPKSAAATNTLTPAPRGEKRAVANGGGANANPGAGHLKGARAARHPGIPAGIPARGPAVLYRCRVLHGDGSTFLVLSCPNVAYIPAVRDHAIVRGARGKDSVLFVFHLSPEDVVDDAAYAPLLALKGTHVLLGCGREGRGRGAGGLQHRKLAERSVQLNFVAPQAFPLHSALLNTAGHEGADSVSSCEEVGAGGSRAVVGHTLTKAMLLPVAARGINLSAVRPPVEVAEIWEDMEQRVEEAGLRDERDGIVARLWRAHGLIRESGLPSXXXXXXXXXXXFLNLGGEDGDEDDCDADNTMRSKSGASASGSGGQPTRLSSFLPXXXXXXXLYSGCGPPGKRARTGNGSRLPASHHPSRGPGPXXXXXXXXXXXQAPLFSGGGLAGAEVFFLGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAVLTFVKACKEFSGEDVSYQAMHCKNLERAWGWRGGSGTRTGSSGSG--GSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSGNTVGVLPAAANLLSQVLEPKDEDGDDAKEEIVPS 3000
            MK EDLI SYCQV+GTGDDGSSPCLIVSVEKAPRY+GGEPTENKILRRYLFNVGEGTQRFCGEAGVKLAKVNKLFLTGTGAEEHAGLSGLILTLSALGSPALEVFGPTGVD LV GLQAFGPRVG+CPAVSPMPLPLG GESQCSYVLGDEHMEVRCG+VDPAR+QSSK          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        DG D           +LTPAPRGE +A ANG GA ANPGAGH KGARA RHP IPAGIPARGPAVLYRCRVLHG+GSTFLVLSCPNVAY+PAVRDHAIVRGARGKDSVLFVFHLSPEDVVD AAYAPLLALKGTHVLLGCGREGR RGAGGLQHRKLAERSVQLNFVAPQAFPLHSAL+NTAGH+GADSVSSCEE+G GGSR VVGHTLTKAMLLPVAARGINLSAVRPPVEVAEIWEDMEQRVEEAGLRDERD +VARLWRAHGL+R+SG PS            LNLGGEDGDE+D DAD TMR++ GAS                                                                          GL GAEVFFLGTGSAAPTKNRGCSGIL+RIPQAGLVGHN  AAEGAPLRLLIDAGEGTLGHFERQFG EGALREIRGLDCVWISHKHADHHTGLFRLI EHHRARQASR AG GPRE AAPLVVVAPSAVLTFVKACKEFSGED+SYQAM CK+LERAW WRGGSGTR G S SG  GSRRG S LLSGMRSV VIHCREAYGLV+QLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQ FCVAFDGMVL+GNTVGVLPAAANLLSQVLEPK EDGDD KEEIVPS
Sbjct:    1 MKTEDLIHSYCQVIGTGDDGSSPCLIVSVEKAPRYSGGEPTENKILRRYLFNVGEGTQRFCGEAGVKLAKVNKLFLTGTGAEEHAGLSGLILTLSALGSPALEVFGPTGVDTLVAGLQAFGPRVGRCPAVSPMPLPLGPGESQCSYVLGDEHMEVRCGVVDPARSQSSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSNKRRADGAD-----------SLTPAPRGENKATANGDGAIANPGAGHPKGARADRHPEIPAGIPARGPAVLYRCRVLHGEGSTFLVLSCPNVAYVPAVRDHAIVRGARGKDSVLFVFHLSPEDVVDSAAYAPLLALKGTHVLLGCGREGRRRGAGGLQHRKLAERSVQLNFVAPQAFPLHSALVNTAGHDGADSVSSCEEIGTGGSRTVVGHTLTKAMLLPVAARGINLSAVRPPVEVAEIWEDMEQRVEEAGLRDERDVVVARLWRAHGLMRKSGPPSGLTRESGLPNECLNLGGEDGDEEDYDADATMRNEPGASG--------------------------------------------------------------------XXXXXGLGGAEVFFLGTGSAAPTKNRGCSGILVRIPQAGLVGHNGLAAEGAPLRLLIDAGEGTLGHFERQFGREGALREIRGLDCVWISHKHADHHTGLFRLIAEHHRARQASRPAGGGPREAAAPLVVVAPSAVLTFVKACKEFSGEDISYQAMRCKDLERAWHWRGGSGTRAGPSPSGRRGSRRGVSALLSGMRSVSVIHCREAYGLVVQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQHFCVAFDGMVLNGNTVGVLPAAANLLSQVLEPKAEDGDDGKEEIVPS 903          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: A9RE01_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RE01_PHYPA)

HSP 1 Score: 202 bits (513), Expect = 2.370e-54
Identity = 128/315 (40.63%), Postives = 171/315 (54.29%), Query Frame = 1
Query: 2005 FLGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAVLTFVKACKEFSGEDVS-----------YQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRG------ASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSG 2898
            FLGTGSA P+K RG S IL++              EG    +L+DAGEG++G   R+FG  G    +R L CVW+SHKHADH  G+  +I  +             P E A  L ++ PSAV  ++        + VS           +Q +HC           G  +R   +G+ G+          ++ L G+RS+ V HC EAYGLV+     G  +VYSGDTRPC RL++AG G +LLIHEATF+D++   A+ K H T  EA++VG +MRA  VVLTHFSQRYP+   LD  R +  C AFDGMV+ G
Sbjct:    1 FLGTGSAEPSKFRGSSAILLQT-------------EGKH-SMLLDAGEGSIGQLRRKFGSAGVDEVLRSLQCVWLSHKHADHVLGMLSIIHAY-------------PTE-APKLTIIGPSAVKRWISEVFFCDSQAVSLWADMGYNFRPFQFLHCNAFSE------GIFSRPAGNGALGNAEQDTQGFLKNLALLGLRSIYVDHCHEAYGLVIH-GHSGWSIVYSGDTRPCHRLIQAGGGCSLLIHEATFEDNLSDHAIRKRHSTVLEAIDVGLQMRAQFVVLTHFSQRYPQAVTLDASRYKNVCTAFDGMVVRG 280          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: K3WRS3_GLOUD (Lactamase_B domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRS3_GLOUD)

HSP 1 Score: 202 bits (513), Expect = 3.170e-54
Identity = 127/298 (42.62%), Postives = 175/298 (58.72%), Query Frame = 1
Query: 1996 EVFFLGTGSAAPTKNRGCSGILIRI-----PQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEH---HRARQASRLAGAGPRETAAPLVVVAPSAVLTF--------VKACKEFSGEDVSYQAMH-CKNLERAWG-WRGGSGTRTGSSGSGGSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVP 2835
            ++  LGTGSAAP++ RG +GI + +     P A    H D   +     +LID GEGT G   RQFG   A R I GL C+WISH HADH  GL R++ E+   H +R  ++  G         L+++ P +VL++        + AC   S    S+     C++  +    +R    +  G+            ++  +RSVPV HC ++YGLVLQL ++G K+VYSGDTRPC++LV AG  A+LLIHEATFDDSM++DAV K H T  EAL + R+MRA EV+LTHFSQRYP++P
Sbjct:    2 KLIILGTGSAAPSRLRGSTGIYLELKSKAAPVAVPSDHGDMPTDS----MLIDCGEGTYGQLWRQFGDATAAR-IGGLRCIWISHSHADHQCGLVRILYEYVCFHTSRGLNQRQG---------LLIIGPESVLSYANSWVEHIMSACGVESSRRASFFGFATCRDFNQYHHPFRAQLFSHIGA------------VVREIRSVPVWHCYDSYGLVLQL-QNGQKIVYSGDTRPCNQLVTAGMDASLLIHEATFDDSMEEDAVKKKHSTVGEALTIARQMRATEVILTHFSQRYPKLP 272          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: A0A662Y5Q3_9STRA (Lactamase_B domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5Q3_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.140e-53
Identity = 133/312 (42.63%), Postives = 174/312 (55.77%), Query Frame = 1
Query: 2008 LGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAVLTFVKA-CKEFSGEDVS---YQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRGASMLLSGMR-------SVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSGNTVG 2910
            LGTGSAAP+K R  SG+ + +  +G       AAE A   +L+D GEGT G   RQFG E   R I GL C+WISH HADHH GL R++ E+ R             +T  PL+VV P +VL++VK+   EF G+  +   +Q   C    R+                         LLS +        SVPV HC ++YGLVL L + G KLVYSGDT+PC++LV AG  AALL+HEATFDD+M+QDA  K H T  +A+++ RRM+A ++VLTHFSQRYP +P   T  +       DG+    N  G
Sbjct:  130 LGTGSAAPSKLRASSGMYLELSGSG-------AAEVAS--MLVDCGEGTYGQLWRQFGREVTQR-IGGLRCIWISHNHADHHCGLVRVLYEYWRFHTHH-----SDGKTPPPLIVVGPQSVLSYVKSWLPEFGGKMPTSQLFQLATCSEFNRS------------------DHPLRRQLLSDIGFAVTSIISVPVFHCYDSYGLVLTL-QGGKKLVYSGDTKPCNQLVVAGMNAALLVHEATFDDTMEQDARLKKHSTVGQAMDIARRMKAQQLVLTHFSQRYPALPPPVTTSSSS-----DGITTGANPSG 402          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: UPI000D1C3D68 (tRNAse Z TRZ4, mitochondrial-like isoform X2 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C3D68)

HSP 1 Score: 208 bits (530), Expect = 1.180e-53
Identity = 134/326 (41.10%), Postives = 178/326 (54.60%), Query Frame = 1
Query: 1996 EVFFLGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAV---LTFVKACKEFSGEDV-SYQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSGNTVGVLPAAANLLSQVLEPKD 2961
            EV F GTGSA P+K RG SG+L+R+  +                +L+DAGEG LG   R +G   AL  +  ++C+W+SHKHADH  G   ++    RAR               PL+V+  +AV   LT V      SG  + ++  MH    E             GS   G  R   ++ L  + SVPV HC EAYGLVL   + G  LVYSGDTRP DRL++AG G  LLIHEATF+D ++  A  K H T SEAL+VG RM+A +V+LTHFSQRYP+V  +D       CVAFDGMV++ +++  L     ++  VL  +D
Sbjct:  263 EVQFFGTGSAEPSKYRGSSGVLLRLRGSAA--------------MLLDAGEGVLGQIFRSYGEAKALEAVNSIECLWLSHKHADHVLGAVAIVCSQARARTK-------------PLLVIGSTAVVKWLTEVGNAHAQSGFPLPAFVVMHFAEFE-------------GSHHLG--RVLETLQLKSIASVPVNHCYEAYGLVLH-GQTGWHLVYSGDTRPSDRLIQAGAGCTLLIHEATFEDCLESHARKKRHSTVSEALQVGSRMQAEQVILTHFSQRYPKVVEIDVTSYPNACVAFDGMVVTSSSMRGLRELQGVVRMVLAAQD 545          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: A0A2D4BGR7_PYTIN (Zinc phosphodiesterase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGR7_PYTIN)

HSP 1 Score: 207 bits (527), Expect = 1.330e-53
Identity = 133/304 (43.75%), Postives = 164/304 (53.95%), Query Frame = 1
Query: 1996 EVFFLGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQF-GPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAVLTFVKACKEFSGEDVSYQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVL---DTERAQQFCVAFDGMVLS 2895
            +V  LGTGSAAP+K R  S I + +        N R  E A   +L+D GEG  G   RQF   E     ++ L C+WISH HADH  GL R++ E  R R+ + L             V+AP+ VLT+V     F G     +   C  +      R     R                +S  RSV V HC +A+GLV +L  DG +LVYSGDT+PCD+LVRAG  A LLIHEATFDD+M+ DA  K H T S+AL V RRMRA +VVLTHFSQRYP +P     DT      C AFDG+VLS
Sbjct:  254 KVMILGTGSAAPSKLRASSAIYVELT----TDTNSRRTEHAVPAMLLDCGEGAYGQLVRQFDSTEAVATRLQALRCIWISHHHADHQCGLVRVLEEFLRVREDNEL------------FVIAPNCVLTYVTTW--FPGLPQGVRLATCDEINDHSSPRRHEFLRH-----------MRAFVSEWRSVRVWHCHDAFGLVCRL-VDGRRLVYSGDTKPCDQLVRAGMDATLLIHEATFDDTMEDDAERKKHSTVSQALGVARRMRAQQVVLTHFSQRYPSLPPTVSADTSSGAVVCCAFDGLVLS 527          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: D8RZL7_SELML (Lactamase_B domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RZL7_SELML)

HSP 1 Score: 211 bits (537), Expect = 1.510e-53
Identity = 136/326 (41.72%), Postives = 181/326 (55.52%), Query Frame = 1
Query: 1996 EVFFLGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAV---LTFVKACKEFSGEDV-SYQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSGNTVGVLPAAANLLSQVLEPKD 2961
            EV F GTGSA P+K RG SG+L+R+  +                +L+DAGEG LG   R +G   AL  +  ++C+W+SHKHADH  G   ++       QA        RE   PL+V+  +AV   LT V      SG  + ++  MH +  E             GS   G  R   ++ L  + SVPV HC EAYGLVL   + G  LVYSGDTRP DRL++AG G  LLIHEATF+D ++  A  K HCT SEAL+VG RM+A +V+LTHFSQRYP+V  +D       CVAFDGMV++ +++  L     ++  VL  +D
Sbjct:  406 EVQFFGTGSAEPSKYRGSSGVLLRLRGSAA--------------MLLDAGEGVLGQIFRSYGEAKALEAVNSIECLWLSHKHADHVLGAVAIVCS-----QA--------RERTKPLLVIGSTAVVKWLTEVCNAHAQSGFPLPAFVVMHFEEFE-------------GSHHLG--RVLETLQLKSIASVPVNHCYEAYGLVLH-GQTGWHLVYSGDTRPSDRLIQAGAGCTLLIHEATFEDCLESHARKKRHCTVSEALQVGSRMQAEQVILTHFSQRYPKVVEIDVTSYPNACVAFDGMVVTSSSMRGLRELQGVVRMVLAAQD 688          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: A0A5D6XTC9_9STRA (Ribonuclease Z n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTC9_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.770e-53
Identity = 136/307 (44.30%), Postives = 172/307 (56.03%), Query Frame = 1
Query: 1996 EVFFLGTGSAAPTKNRGCSGILIRIPQA-----GLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAVLTFVKA----------------------CKEFSGEDVSYQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVP 2835
            ++  LGTGSAAP+K RG + + +  P A      LVG    +A   P  +LID GEGT G   RQFG E A R I  L CVWISH HADH  GL R++ E  R   +     A P + A PLVV+AP +V+++ ++                      C+EF+      +A     +E                           +++ + SVPV HC ++YGLVL+L  DG K+VYSGDTRPCD LV AGT AALLIHEATFDD++  DAVSK H T  EALEV R+MRA EVVLTHFSQRYP++P
Sbjct:  634 KLVVLGTGSAAPSKLRGSTAMYLEFPGARSPPTSLVG--TESARRTPDAMLIDCGEGTFGQLWRQFGDETAAR-IGALSCVWISHSHADHQCGLIRVLSEFVRYHASV----AAPLDHA-PLVVIAPLSVISYARSWMRQIADSDGAAGRTVRVAFATCREFNDRRHPLRAALLARIET--------------------------VVAQLSSVPVHHCYDSYGLVLEL-RDGRKVVYSGDTRPCDALVAAGTPAALLIHEATFDDALASDAVSKRHSTVGEALEVARQMRAREVVLTHFSQRYPKLP 905          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: A0A0H5QW55_9EUKA (Ribonuclease Z n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QW55_9EUKA)

HSP 1 Score: 209 bits (531), Expect = 3.590e-53
Identity = 124/311 (39.87%), Postives = 171/311 (54.98%), Query Frame = 1
Query: 2005 FLGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAVLTFVKACKEFSGEDVSYQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRGASMLLSG-----MRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSGNTVGVLPA 2922
            FLGTG+AAP+K R  S I + IP  G+             RLLID GEG LG   R    +     +  L  VWISHKHADHH GL  ++    R+R+         + TA  + V+APS VL ++++    + +D+    + C++                          AS +LS      ++SVPV+HC  ++GLVL    DG + VYSGDTRPC  L+ AG+ A +L+HEATF+D +Q +A+ K HCTT EAL+VGR+M A E +LTHFSQRYP++P   T  A   CVAFD M +    + +LP+
Sbjct:  393 FLGTGAAAPSKYRSSSAIDLLIPSYGV-------------RLLIDCGEGALGQMHRIIPEKEFPSYMASLRVVWISHKHADHHVGLLNVL----RSRR---------QHTANDVTVIAPSTVLEWMRSFVANADDDIRCHLVDCRDAL------------------------ASTILSPFGITCLQSVPVLHCSNSFGLVLDHC-DGWRFVYSGDTRPCQALIDAGSNATVLVHEATFEDDLQDEAILKKHCTTKEALDVGRQMNAAETILTHFSQRYPKIPTATTVAAASSCVAFDLMRIQFGRLAILPS 652          
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Match: A0A7S2WA18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WA18_9STRA)

HSP 1 Score: 202 bits (515), Expect = 9.100e-53
Identity = 134/332 (40.36%), Postives = 185/332 (55.72%), Query Frame = 1
Query: 1981 GLAGAEVFFLGTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLGHFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRLAGAGPRETAAPLVVVAPSAVLTFVKACKEFSGEDV-SYQAMHCKNLERAWGWRGGSGTRTGSSGSGGSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDGAKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEALEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSGNTVGVLPAAANLLSQVLEPKDEDGD 2973
            G AGA V FLGTGSA P+K+R  S I + +P+A          EG    +L+D GEGTLG   R +G      ++ GL  +WISH HADHH GL  ++    R  +A R  G   RE    LV+VAP +V  +++  ++     V SYQ + C+ L      R  +      +        A + L  + +V V HCR+++G + +  E G KLVYSGD RP D LV AG GA LLIHEATF+DSM  DAV+K HCT SEA+ V  RM A   +LTHFSQRYP +P L ++ + +  VA D M +S   +    A+  +L  +L P+ ++ +
Sbjct:  125 GAAGARVSFLGTGSAIPSKHRNTSAIHVEVPRA----------EGVSRGMLLDVGEGTLGQMHRLWGAGATTDKLLGLSLIWISHPHADHHLGLIDILAARRRLVKAHRGGGGPFRER---LVLVAPRSVALWLEGYEKLDPCCVGSYQMILCETLLPMMAPRLSTTAAPAENSPPLVLALADLGLVCVSNVRVPHCRDSFGGIFES-ESGWKLVYSGDCRPSDSLVAAGQGATLLIHEATFEDSMADDAVAKRHCTISEAVGVAVRMNATRCILTHFSQRYPALPNLPSDVSGKVLVACDMMSVSFRDLLWASASVPVLRCLLPPEADESE 442          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1357.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS74_ECTSI0.000e+081.57Ribonuclease Z n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A9RE01_PHYPA2.370e-5440.63Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
K3WRS3_GLOUD3.170e-5442.62Lactamase_B domain-containing protein n=1 Tax=Glob... [more]
A0A662Y5Q3_9STRA1.140e-5342.63Lactamase_B domain-containing protein n=1 Tax=Noth... [more]
UPI000D1C3D681.180e-5341.10tRNAse Z TRZ4, mitochondrial-like isoform X2 n=2 T... [more]
A0A2D4BGR7_PYTIN1.330e-5343.75Zinc phosphodiesterase, putative n=1 Tax=Pythium i... [more]
D8RZL7_SELML1.510e-5341.72Lactamase_B domain-containing protein n=2 Tax=Sela... [more]
A0A5D6XTC9_9STRA1.770e-5344.30Ribonuclease Z n=1 Tax=Pythium brassicum TaxID=148... [more]
A0A0H5QW55_9EUKA3.590e-5339.87Ribonuclease Z n=1 Tax=Spongospora subterranea Tax... [more]
A0A7S2WA18_9STRA9.100e-5340.36Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1357contigE-fasciculatus_F_contig1357:7436..12235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1374.4
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FS74
KEGG koko:K00784
KEGG Pathwayko03013,map03013
EggNOG free text desc.3'-tRNA processing endoribonuclease activity
EggNOG OGsCOG1234@1,KOG2121@2759
EC3.1.26.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-01_000820.1
Exons6
Model size3327
Cds size2943
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1357.2656.1prot_E-fasciculatus_F_contig1357.2656.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1357 7760..12175 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927853.9874358-UTR-E-fasciculatus_F_contig1357:7435..77591622927853.9874358-UTR-E-fasciculatus_F_contig1357:7435..7759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1357 7436..7759 -
1695995724.2404685-UTR-E-fasciculatus_F_contig1357:7435..77591695995724.2404685-UTR-E-fasciculatus_F_contig1357:7435..7759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1357 7436..7759 -
1622927854.1481643-UTR-E-fasciculatus_F_contig1357:12175..122351622927854.1481643-UTR-E-fasciculatus_F_contig1357:12175..12235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1357 12176..12235 -
1695995724.3140905-UTR-E-fasciculatus_F_contig1357:12175..122351695995724.3140905-UTR-E-fasciculatus_F_contig1357:12175..12235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1357 12176..12235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927854.0628936-CDS-E-fasciculatus_F_contig1357:7759..96201622927854.0628936-CDS-E-fasciculatus_F_contig1357:7759..9620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 7760..9620 -
1695995724.2544932-CDS-E-fasciculatus_F_contig1357:7759..96201695995724.2544932-CDS-E-fasciculatus_F_contig1357:7759..9620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 7760..9620 -
1622927854.080041-CDS-E-fasciculatus_F_contig1357:9961..106251622927854.080041-CDS-E-fasciculatus_F_contig1357:9961..10625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 9962..10625 -
1695995724.267637-CDS-E-fasciculatus_F_contig1357:9961..106251695995724.267637-CDS-E-fasciculatus_F_contig1357:9961..10625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 9962..10625 -
1622927854.0964687-CDS-E-fasciculatus_F_contig1357:10927..110031622927854.0964687-CDS-E-fasciculatus_F_contig1357:10927..11003Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 10928..11003 -
1695995724.2810712-CDS-E-fasciculatus_F_contig1357:10927..110031695995724.2810712-CDS-E-fasciculatus_F_contig1357:10927..11003Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 10928..11003 -
1622927854.107174-CDS-E-fasciculatus_F_contig1357:11354..115221622927854.107174-CDS-E-fasciculatus_F_contig1357:11354..11522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 11355..11522 -
1695995724.2897513-CDS-E-fasciculatus_F_contig1357:11354..115221695995724.2897513-CDS-E-fasciculatus_F_contig1357:11354..11522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 11355..11522 -
1622927854.1211314-CDS-E-fasciculatus_F_contig1357:11839..119771622927854.1211314-CDS-E-fasciculatus_F_contig1357:11839..11977Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 11840..11977 -
1695995724.2979817-CDS-E-fasciculatus_F_contig1357:11839..119771695995724.2979817-CDS-E-fasciculatus_F_contig1357:11839..11977Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 11840..11977 -
1622927854.1337306-CDS-E-fasciculatus_F_contig1357:12139..121751622927854.1337306-CDS-E-fasciculatus_F_contig1357:12139..12175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 12140..12175 -
1695995724.3060927-CDS-E-fasciculatus_F_contig1357:12139..121751695995724.3060927-CDS-E-fasciculatus_F_contig1357:12139..12175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1357 12140..12175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1357.2656.1

>prot_E-fasciculatus_F_contig1357.2656.1 ID=prot_E-fasciculatus_F_contig1357.2656.1|Name=mRNA_E-fasciculatus_F_contig1357.2656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=981bp
MKNEDLIQSYCQVVGTGDDGSSPCLIVSVEKAPRYNGGEPTENKILRRYL
FNVGEGTQRFCGEAGVKLAKVNKLFLTGTGAEEHAGLSGLILTLSALGSP
ALEVFGPTGVDKLVEGLQAFGPRVGKCPAVSPMPLPLGTGESQCSYVLGD
EHMEVRCGLVDPARAQSSKDVVTVDSSSCESSSSSSSSSSGESSSAESSS
AESSSEESSSEESSSGDDDDDSASEESGDAGQGGKGEEQGGKQKCGSSGG
GSRGDGGDERVPKSAAATNTLTPAPRGEKRAVANGGGANANPGAGHLKGA
RAARHPGIPAGIPARGPAVLYRCRVLHGDGSTFLVLSCPNVAYIPAVRDH
AIVRGARGKDSVLFVFHLSPEDVVDDAAYAPLLALKGTHVLLGCGREGRG
RGAGGLQHRKLAERSVQLNFVAPQAFPLHSALLNTAGHEGADSVSSCEEV
GAGGSRAVVGHTLTKAMLLPVAARGINLSAVRPPVEVAEIWEDMEQRVEE
AGLRDERDGIVARLWRAHGLIRESGLPSGLIRESGLPNGFLNLGGEDGDE
DDCDADNTMRSKSGASASGSGGQPTRLSSFLPPPPPPPPLYSGCGPPGKR
ARTGNGSRLPASHHPSRGPGPPPPPPPPPPPQQAPLFSGGGLAGAEVFFL
GTGSAAPTKNRGCSGILIRIPQAGLVGHNDRAAEGAPLRLLIDAGEGTLG
HFERQFGPEGALREIRGLDCVWISHKHADHHTGLFRLIVEHHRARQASRL
AGAGPRETAAPLVVVAPSAVLTFVKACKEFSGEDVSYQAMHCKNLERAWG
WRGGSGTRTGSSGSGGSRRGASMLLSGMRSVPVIHCREAYGLVLQLWEDG
AKLVYSGDTRPCDRLVRAGTGAALLIHEATFDDSMQQDAVSKFHCTTSEA
LEVGRRMRAGEVVLTHFSQRYPRVPVLDTERAQQFCVAFDGMVLSGNTVG
VLPAAANLLSQVLEPKDEDGDDAKEEIVPS*
back to top

mRNA from alignment at E-fasciculatus_F_contig1357:7436..12235-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1357.2656.1 ID=mRNA_E-fasciculatus_F_contig1357.2656.1|Name=mRNA_E-fasciculatus_F_contig1357.2656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4800bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1357:7436..12235- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAGAGAGAGGTCCCACAAACCGTACGTGTGGCACGACCCTCTCGCCGA CGCTGATGCCATGAAGAACGAGGACCTCATCCAAAGCTACTGCCAGGTGA GTTAGCTCCCAGGGCACATCGATGATACCGGAGAAGCGCGCGATGATAAT AAGCATAACCAGTCTCGACGCCTCCCTGTCCAATCTCCTTGACAACAGCA GTGCTGGCTGCGTACCTTTGCTGCTGCTGCTGCTGCTGCCGCTGTTGTTT TTGTTCAGGTCGTTGGGACAGGAGACGATGGGAGCAGCCCGTGCCTCATT GTCTCCGTGGAGAAGGCTCCAAGGTACAACGGGGGCGAGCCGACGGAGAA CAAAATACTGCGCCGCTATCTGTTCAACGTTGGAGAGGGAACCCAGGTGA GCGATTCGAGACTTTGGTAGATGCAGCAGTAGAGATTGCCTGGGCCGTTG CTGCCAACTAAATAGCGCTTTTCATGTTTCGTGCGTGCTTTGTCGAGGGC GTGTTGGTGCCGTGCTGACTGCGACATTAGGCCGCACCAGTCCTGCTGTA GTTCTGGTCGGGTATGTCAGCGTCAAACCAAGCCTGCTCATCGCGGACGA AATAAGCATGGGAGTCTACTGCTGTGGATTGCTACCATGCACGAAGCAGG AAACATCGACACTCCAAACGTCTCAAGCCACTCCCCCCCCTCCCTTCTTC ATTTCCCTCTTAGCGTTTCTGCGGAGAGGCCGGCGTCAAGCTGGCTAAGG TAAACAAGCTCTTCTTGACGGGCACGGGGGCGGAGGAGCACGCGGGTCTA TCGGGACTGATACTGACCCTGTCTGCTCTGGGTTCTCCGGCGCTTGAGGT GTTTGGTCCGACTGGAGTCGATAAACTCGTGGTGAGACAGAGACAACCAT CGACTTGTAAAATAGGAACAGGCCTCATCCATATTTTCTCCAGAAATCTC AGGTCTCCACGCACCAGGCTACAATAACCAGTACCAAGTCATGTTATGCT GCTGCCCACGCCATGCAAATCCACCCGTAGGTGCGGATAGCCTGTAGCAT TCCGAATCCGATCCACCACACACCTTGACGCGCACGCCCCCCCCTCCTCT GCATCGCTATCTATATCTGTATTCCTCTCGCTTTTTGAACCGAACACCCC AGTGCCCGTCTCTCACCGCTTCATACCTCTCTCTTGCCCTGTCGTGATCC TTGTCTTGTCTTTGCCCTTCCCGTGTCTGCAGGAAGGTCTTCAAGCCTTT GGGCCACGAGTCGGCAAATGCCCTGCGGTTTCACCGATGCCTCTCCCTCT TGGTACCGGTACGCGTCGAAATCTACCTCTTAGACTCTTGTACTGCTGTG TGCCGCATCAACGCCAAAATGTATCCGAAAGTCGCGGCTAAGAACTGCAC TCGACAGCGATAGTTCCACAGACGACCACGCTGAAACCCACGGCCCTAAC TAGGCTCGACGATCGCAATGACTGACAAACCCACGCGCTGCTTCTCTCCC GCGAGCGGTAGGTAGACACTTGCCACAACCACAGGAATCGTGACGCAGAC CTTACTCTTTCGGCCCTTGTCTGCTATCACGATTTTCCACAATGAAATGA AATGAAACAGGCGAATCGCAGTGCAGCTACGTGCTAGGGGATGAGCACAT GGAGGTCAGGTGCGGCCTGGTGGACCCTGCACGAGCGCAGTCGTCGAAGG ACGTGGTAACGGTCGACTCTTCTTCTTGTGAAAGCTCTAGCAGCAGCAGC AGCAGCAGCAGCGGAGAGAGCAGTAGTGCAGAGAGCAGCAGTGCAGAAAG CAGCAGTGAAGAGAGCAGCAGCGAAGAGAGCAGCAGCGGGGACGACGACG ATGATAGCGCCAGCGAAGAAAGCGGAGACGCGGGGCAAGGGGGAAAGGGC GAGGAACAGGGGGGCAAGCAGAAATGCGGCAGCAGCGGCGGTGGAAGCCG TGGTGATGGTGGTGACGAAAGGGTACCGAAGAGTGCAGCAGCTACCAATA CCCTCACCCCAGCACCTCGCGGCGAGAAAAGGGCGGTAGCAAACGGAGGG GGAGCCAATGCTAACCCGGGAGCAGGCCACCTAAAGGGTGCGAGAGCGGC CCGACACCCGGGAATACCCGCGGGTATCCCTGCTCGAGGGCCTGCTGTGC TGTACCGCTGCAGGGTCCTGCACGGGGATGGGTCTACGTTCCTTGTGCTC TCCTGCCCGAACGTCGCGTACATTCCGGCCGTCAGGGACCATGCGATCGT GAGAGGTGCACGAGGCAAAGACAGGTGGGTGGTTTTCTGTTCTTGAGGAC AGTAACTTTCGGAGGCGGTGGGTGTGCCGTCTCGACCTTAGTTTTGAGTG TCCTTTGCTGCGGCAGATTGTCCATACAGATGCGTTTCCACATGCTTCCA ACTCGTCCTCTCGTCGATGCCGGTTGTCCAGACCCTTCTCGACGCGTGTC GTATCGCACCACCCGTACCCAGGCCGACGCTCGATGTACCTTCTACCCGC AATCCATGACCCAGGTAACAGACGGCAATCCTTGTCCCCCGCGAAATCAA GTATTTCACGGTCCCTCCCCCCCCACCCTCCGTCTTCACCTGCTCCCTTT CGAAAACGATTGCAGTGTCCTGTTCGTTTTTCATTTGTCCCCGGAGGACG TGGTCGACGACGCGGCGTACGCCCCGCTGCTAGCCCTCAAGGGCACCCAC GTGCTTCTGGGCTGCGGGCGCGAAGGGCGCGGGCGAGGAGCAGGCGGGCT GCAGCACCGCAAGCTGGCGGAGAGGTCTGTCCAGCTGAACTTCGTCGCTC CGCAGGCTTTCCCGCTGCACTCCGCCCTGCTAAATACGGCGGGGCACGAA GGCGCCGATAGTGTCAGCTCTTGCGAGGAAGTCGGCGCTGGGGGATCAAG GGCCGTGGTAGGGCACACGCTGACGAAGGCGATGTTGCTGCCGGTGGCCG CGCGCGGGATCAACTTGTCTGCCGTAAGACCTCCAGTTGAGGTTGCCGAG ATATGGGAGGACATGGAGCAGAGGGTGGAGGAAGCAGGGTTGAGAGACGA AAGGGATGGGATTGTGGCAAGGCTCTGGCGGGCGCACGGCCTGATCAGGG AGAGCGGGCTACCAAGCGGCCTGATTAGAGAAAGCGGGCTGCCAAACGGG TTCCTGAATCTAGGTGGGGAAGATGGTGATGAAGACGACTGCGACGCCGA CAACACGATGCGGAGTAAGTCGGGAGCCTCGGCCTCGGGCTCAGGCGGGC AACCAACCCGACTCTCTTCGTTTCTGCCGCCTCCGCCGCCGCCGCCCCCG TTGTACAGCGGCTGTGGTCCTCCCGGCAAGCGAGCACGGACAGGGAACGG CAGTAGACTTCCGGCATCCCATCACCCGTCCCGTGGACCAGGTCCGCCGC CACCGCCGCCGCCGCCACCGCCGCCCCAGCAGGCGCCATTGTTCTCCGGC GGCGGGCTGGCCGGGGCAGAAGTGTTTTTCCTCGGGACGGGAAGCGCAGC ACCCACCAAGAACAGAGGCTGCAGCGGCATCTTGATCCGGATCCCCCAGG CTGGGCTGGTTGGTCACAACGACAGGGCCGCGGAGGGCGCGCCGCTGCGG CTGCTGATAGACGCCGGCGAGGGCACCCTGGGACACTTCGAGCGCCAGTT CGGGCCGGAAGGGGCACTGCGGGAGATCCGAGGACTCGACTGCGTGTGGA TTTCGCACAAGCACGCCGACCACCACACGGGACTGTTCCGCCTTATCGTG GAGCATCACCGCGCGCGCCAAGCCTCCCGGCTGGCGGGGGCAGGGCCGCG GGAGACAGCGGCCCCGCTGGTGGTGGTCGCTCCGAGCGCCGTCCTCACGT TCGTGAAGGCGTGCAAGGAGTTTTCGGGAGAGGACGTATCATATCAAGCC ATGCACTGCAAGAACCTCGAGCGGGCTTGGGGCTGGCGGGGTGGCAGCGG TACCCGGACAGGCTCTAGTGGTAGTGGGGGCAGCAGGCGAGGGGCTTCCA TGTTGCTGAGCGGCATGCGCTCGGTGCCTGTCATCCACTGCCGGGAAGCG TACGGCCTCGTCCTGCAGCTGTGGGAGGACGGTGCGAAGCTGGTGTACAG CGGAGACACGAGGCCCTGCGATCGCCTGGTGAGGGCAGGGACCGGGGCGG CTCTGTTGATCCACGAGGCGACCTTCGACGACTCGATGCAGCAGGACGCC GTGTCAAAGTTCCACTGCACCACGTCCGAGGCGCTGGAGGTAGGGAGGCG CATGCGGGCGGGGGAGGTCGTGCTCACCCATTTCTCGCAGAGGTATCCGC GGGTGCCCGTCTTGGACACCGAGCGGGCCCAGCAGTTCTGTGTCGCGTTC GACGGTATGGTCCTGAGCGGCAACACGGTCGGCGTGCTTCCCGCGGCTGC GAACCTGCTCAGCCAAGTTTTGGAGCCCAAAGATGAGGACGGCGATGACG CGAAAGAAGAGATTGTGCCTTCTTGAGACATGGAGCTGTACTATACTTCT CTTGTGTTTTTTTGTTGTGAGGAAGGTACATGCCGGTTTTCTCTTGGTGC CAGAATTTTTTTTTGTTGAGCTCGTCTTGCATTTTATTGCAGTGGCGGGG GCGTCAATAACGCCGGTTGATTAGCGCGGGTGGTCCCGTATAGCGCCGGT GAAATTTCTGGGCACAGATTGAATCACCAAGTCATTCTGTGCATTGAATA GTGCCGGTCGATGCGCCGGGCACATACCTGCGTGTTATTGAGGGCCCCCC ACTGTAACTCGCCATTCCATCGGTTAAAATGGACAGGATACCCATATCCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1357:7436..12235-

>mRNA_E-fasciculatus_F_contig1357.2656.1 ID=mRNA_E-fasciculatus_F_contig1357.2656.1|Name=mRNA_E-fasciculatus_F_contig1357.2656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=5886bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1357:7436..12235- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGAACGAGGACCTCATCCAAAGCTACTGCCAGATGAAGAACGAGGA
CCTCATCCAAAGCTACTGCCAGGTCGTTGGGACAGGAGACGATGGGAGCA
GCCCGTGCCTCATTGTCTCCGTGGAGAAGGCTCCAAGGTACAACGGGGGC
GAGCCGACGGAGAACAAAATACTGCGCCGCTATCTGTTCAACGTTGGAGA
GGGAACCCAGGTCGTTGGGACAGGAGACGATGGGAGCAGCCCGTGCCTCA
TTGTCTCCGTGGAGAAGGCTCCAAGGTACAACGGGGGCGAGCCGACGGAG
AACAAAATACTGCGCCGCTATCTGTTCAACGTTGGAGAGGGAACCCAGCG
TTTCTGCGGAGAGGCCGGCGTCAAGCTGGCTAAGGTAAACAAGCTCTTCT
TGACGGGCACGGGGGCGGAGGAGCACGCGGGTCTATCGGGACTGATACTG
ACCCTGTCTGCTCTGGGTTCTCCGGCGCTTGAGGTGTTTGGTCCGACTGG
AGTCGATAAACTCGTGCGTTTCTGCGGAGAGGCCGGCGTCAAGCTGGCTA
AGGTAAACAAGCTCTTCTTGACGGGCACGGGGGCGGAGGAGCACGCGGGT
CTATCGGGACTGATACTGACCCTGTCTGCTCTGGGTTCTCCGGCGCTTGA
GGTGTTTGGTCCGACTGGAGTCGATAAACTCGTGGAAGGTCTTCAAGCCT
TTGGGCCACGAGTCGGCAAATGCCCTGCGGTTTCACCGATGCCTCTCCCT
CTTGGTACCGGAAGGTCTTCAAGCCTTTGGGCCACGAGTCGGCAAATGCC
CTGCGGTTTCACCGATGCCTCTCCCTCTTGGTACCGGCGAATCGCAGTGC
AGCTACGTGCTAGGGGATGAGCACATGGAGGTCAGGTGCGGCCTGGTGGA
CCCTGCACGAGCGCAGTCGTCGAAGGACGTGGTAACGGTCGACTCTTCTT
CTTGTGAAAGCTCTAGCAGCAGCAGCAGCAGCAGCAGCGGAGAGAGCAGT
AGTGCAGAGAGCAGCAGTGCAGAAAGCAGCAGTGAAGAGAGCAGCAGCGA
AGAGAGCAGCAGCGGGGACGACGACGATGATAGCGCCAGCGAAGAAAGCG
GAGACGCGGGGCAAGGGGGAAAGGGCGAGGAACAGGGGGGCAAGCAGAAA
TGCGGCAGCAGCGGCGGTGGAAGCCGTGGTGATGGTGGTGACGAAAGGGT
ACCGAAGAGTGCAGCAGCTACCAATACCCTCACCCCAGCACCTCGCGGCG
AGAAAAGGGCGGTAGCAAACGGAGGGGGAGCCAATGCTAACCCGGGAGCA
GGCCACCTAAAGGGTGCGAGAGCGGCCCGACACCCGGGAATACCCGCGGG
TATCCCTGCTCGAGGGCCTGCTGTGCTGTACCGCTGCAGGGTCCTGCACG
GGGATGGGTCTACGTTCCTTGTGCTCTCCTGCCCGAACGTCGCGTACATT
CCGGCCGTCAGGGACCATGCGATCGTGAGAGGTGCACGAGGCAAAGACAG
GCGAATCGCAGTGCAGCTACGTGCTAGGGGATGAGCACATGGAGGTCAGG
TGCGGCCTGGTGGACCCTGCACGAGCGCAGTCGTCGAAGGACGTGGTAAC
GGTCGACTCTTCTTCTTGTGAAAGCTCTAGCAGCAGCAGCAGCAGCAGCA
GCGGAGAGAGCAGTAGTGCAGAGAGCAGCAGTGCAGAAAGCAGCAGTGAA
GAGAGCAGCAGCGAAGAGAGCAGCAGCGGGGACGACGACGATGATAGCGC
CAGCGAAGAAAGCGGAGACGCGGGGCAAGGGGGAAAGGGCGAGGAACAGG
GGGGCAAGCAGAAATGCGGCAGCAGCGGCGGTGGAAGCCGTGGTGATGGT
GGTGACGAAAGGGTACCGAAGAGTGCAGCAGCTACCAATACCCTCACCCC
AGCACCTCGCGGCGAGAAAAGGGCGGTAGCAAACGGAGGGGGAGCCAATG
CTAACCCGGGAGCAGGCCACCTAAAGGGTGCGAGAGCGGCCCGACACCCG
GGAATACCCGCGGGTATCCCTGCTCGAGGGCCTGCTGTGCTGTACCGCTG
CAGGGTCCTGCACGGGGATGGGTCTACGTTCCTTGTGCTCTCCTGCCCGA
ACGTCGCGTACATTCCGGCCGTCAGGGACCATGCGATCGTGAGAGGTGCA
CGAGGCAAAGACAGTGTCCTGTTCGTTTTTCATTTGTCCCCGGAGGACGT
GGTCGACGACGCGGCGTACGCCCCGCTGCTAGCCCTCAAGGGCACCCACG
TGCTTCTGGGCTGCGGGCGCGAAGGGCGCGGGCGAGGAGCAGGCGGGCTG
CAGCACCGCAAGCTGGCGGAGAGGTCTGTCCAGCTGAACTTCGTCGCTCC
GCAGGCTTTCCCGCTGCACTCCGCCCTGCTAAATACGGCGGGGCACGAAG
GCGCCGATAGTGTCAGCTCTTGCGAGGAAGTCGGCGCTGGGGGATCAAGG
GCCGTGGTAGGGCACACGCTGACGAAGGCGATGTTGCTGCCGGTGGCCGC
GCGCGGGATCAACTTGTCTGCCGTAAGACCTCCAGTTGAGGTTGCCGAGA
TATGGGAGGACATGGAGCAGAGGGTGGAGGAAGCAGGGTTGAGAGACGAA
AGGGATGGGATTGTGGCAAGGCTCTGGCGGGCGCACGGCCTGATCAGGGA
GAGCGGGCTACCAAGCGGCCTGATTAGAGAAAGCGGGCTGCCAAACGGGT
TCCTGAATCTAGGTGGGGAAGATGGTGATGAAGACGACTGCGACGCCGAC
AACACGATGCGGAGTAAGTCGGGAGCCTCGGCCTCGGGCTCAGGCGGGCA
ACCAACCCGACTCTCTTCGTTTCTGCCGCCTCCGCCGCCGCCGCCCCCGT
TGTACAGCGGCTGTGGTCCTCCCGGCAAGCGAGCACGGACAGGGAACGGC
AGTAGACTTCCGGCATCCCATCACCCGTCCCGTGGACCAGGTCCGCCGCC
ACCGCCGCCGCCGCCACCGCCGCCCCAGCAGGCGCCATTGTTCTCCGGCG
GCGGGCTGGCCGGGGCAGAAGTGTTTTTCCTCGGGACGGGAAGCGCAGCA
CCCACCAAGAACAGAGGCTGCAGCGGCATCTTGATCCGGATCCCCCAGGC
TGGGCTGGTTGGTCACAACGACAGGGCCGCGGAGGGCGCGCCGCTGCGGC
TGCTGATAGACGCCGGCGAGGGCACCCTGGGACACTTCGAGCGCCAGTTC
GGGCCGGAAGGGGCACTGCGGGAGATCCGAGGACTCGACTGCGTGTGGAT
TTCGCACAAGCACGCCGACCACCACACGGGACTGTTCCGCCTTATCGTGG
AGCATCACCGCGCGCGCCAAGCCTCCCGGCTGGCGGGGGCAGGGCCGCGG
GAGACAGCGGCCCCGCTGGTGGTGGTCGCTCCGAGCGCCGTCCTCACGTT
CGTGAAGGCGTGCAAGGAGTTTTCGGGAGAGGACGTATCATATCAAGCCA
TGCACTGCAAGAACCTCGAGCGGGCTTGGGGCTGGCGGGGTGGCAGCGGT
ACCCGGACAGGCTCTAGTGGTAGTGGGGGCAGCAGGCGAGGGGCTTCCAT
GTTGCTGAGCGGCATGCGCTCGGTGCCTGTCATCCACTGCCGGGAAGCGT
ACGGCCTCGTCCTGCAGCTGTGGGAGGACGGTGCGAAGCTGGTGTACAGC
GGAGACACGAGGCCCTGCGATCGCCTGGTGAGGGCAGGGACCGGGGCGGC
TCTGTTGATCCACGAGGCGACCTTCGACGACTCGATGCAGCAGGACGCCG
TGTCAAAGTTCCACTGCACCACGTCCGAGGCGCTGGAGGTAGGGAGGCGC
ATGCGGGCGGGGGAGGTCGTGCTCACCCATTTCTCGCAGAGGTATCCGCG
GGTGCCCGTCTTGGACACCGAGCGGGCCCAGCAGTTCTGTGTCGCGTTCG
ACGGTATGGTCCTGAGCGGCAACACGGTCGGCGTGCTTCCCGCGGCTGCG
AACCTGCTCAGCCAAGTTTTGGAGCCCAAAGATGAGGACGGCGATGACGC
GAAAGAAGAGATTGTGCCTTCTTGATGTCCTGTTCGTTTTTCATTTGTCC
CCGGAGGACGTGGTCGACGACGCGGCGTACGCCCCGCTGCTAGCCCTCAA
GGGCACCCACGTGCTTCTGGGCTGCGGGCGCGAAGGGCGCGGGCGAGGAG
CAGGCGGGCTGCAGCACCGCAAGCTGGCGGAGAGGTCTGTCCAGCTGAAC
TTCGTCGCTCCGCAGGCTTTCCCGCTGCACTCCGCCCTGCTAAATACGGC
GGGGCACGAAGGCGCCGATAGTGTCAGCTCTTGCGAGGAAGTCGGCGCTG
GGGGATCAAGGGCCGTGGTAGGGCACACGCTGACGAAGGCGATGTTGCTG
CCGGTGGCCGCGCGCGGGATCAACTTGTCTGCCGTAAGACCTCCAGTTGA
GGTTGCCGAGATATGGGAGGACATGGAGCAGAGGGTGGAGGAAGCAGGGT
TGAGAGACGAAAGGGATGGGATTGTGGCAAGGCTCTGGCGGGCGCACGGC
CTGATCAGGGAGAGCGGGCTACCAAGCGGCCTGATTAGAGAAAGCGGGCT
GCCAAACGGGTTCCTGAATCTAGGTGGGGAAGATGGTGATGAAGACGACT
GCGACGCCGACAACACGATGCGGAGTAAGTCGGGAGCCTCGGCCTCGGGC
TCAGGCGGGCAACCAACCCGACTCTCTTCGTTTCTGCCGCCTCCGCCGCC
GCCGCCCCCGTTGTACAGCGGCTGTGGTCCTCCCGGCAAGCGAGCACGGA
CAGGGAACGGCAGTAGACTTCCGGCATCCCATCACCCGTCCCGTGGACCA
GGTCCGCCGCCACCGCCGCCGCCGCCACCGCCGCCCCAGCAGGCGCCATT
GTTCTCCGGCGGCGGGCTGGCCGGGGCAGAAGTGTTTTTCCTCGGGACGG
GAAGCGCAGCACCCACCAAGAACAGAGGCTGCAGCGGCATCTTGATCCGG
ATCCCCCAGGCTGGGCTGGTTGGTCACAACGACAGGGCCGCGGAGGGCGC
GCCGCTGCGGCTGCTGATAGACGCCGGCGAGGGCACCCTGGGACACTTCG
AGCGCCAGTTCGGGCCGGAAGGGGCACTGCGGGAGATCCGAGGACTCGAC
TGCGTGTGGATTTCGCACAAGCACGCCGACCACCACACGGGACTGTTCCG
CCTTATCGTGGAGCATCACCGCGCGCGCCAAGCCTCCCGGCTGGCGGGGG
CAGGGCCGCGGGAGACAGCGGCCCCGCTGGTGGTGGTCGCTCCGAGCGCC
GTCCTCACGTTCGTGAAGGCGTGCAAGGAGTTTTCGGGAGAGGACGTATC
ATATCAAGCCATGCACTGCAAGAACCTCGAGCGGGCTTGGGGCTGGCGGG
GTGGCAGCGGTACCCGGACAGGCTCTAGTGGTAGTGGGGGCAGCAGGCGA
GGGGCTTCCATGTTGCTGAGCGGCATGCGCTCGGTGCCTGTCATCCACTG
CCGGGAAGCGTACGGCCTCGTCCTGCAGCTGTGGGAGGACGGTGCGAAGC
TGGTGTACAGCGGAGACACGAGGCCCTGCGATCGCCTGGTGAGGGCAGGG
ACCGGGGCGGCTCTGTTGATCCACGAGGCGACCTTCGACGACTCGATGCA
GCAGGACGCCGTGTCAAAGTTCCACTGCACCACGTCCGAGGCGCTGGAGG
TAGGGAGGCGCATGCGGGCGGGGGAGGTCGTGCTCACCCATTTCTCGCAG
AGGTATCCGCGGGTGCCCGTCTTGGACACCGAGCGGGCCCAGCAGTTCTG
TGTCGCGTTCGACGGTATGGTCCTGAGCGGCAACACGGTCGGCGTGCTTC
CCGCGGCTGCGAACCTGCTCAGCCAAGTTTTGGAGCCCAAAGATGAGGAC
GGCGATGACGCGAAAGAAGAGATTGTGCCTTCTTGA
back to top