mRNA_E-fasciculatus_F_contig13554.2645.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13554.2645.1
Unique NamemRNA_E-fasciculatus_F_contig13554.2645.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: D8LMN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN2_ECTSI)

HSP 1 Score: 510 bits (1314), Expect = 1.860e-168
Identity = 253/255 (99.22%), Postives = 255/255 (100.00%), Query Frame = 1
Query:   34 MDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAKEKNPDFNLSAHRAAAR 798
            MDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIK+HIQ+HPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAKEKNPDFNLSAHRAAAR
Sbjct:    1 MDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKTHIQNHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAKEKNPDFNLSAHRAAAR 255          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 526 bits (1356), Expect = 8.590e-168
Identity = 260/266 (97.74%), Postives = 264/266 (99.25%), Query Frame = 1
Query:    1 PRAPDSLGTPNMDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAKEKNPDFNLSAHRAAAR 798
            PRAPDSLGTPNMDILMAKAEEPT LVNPPEGVMDRIHFVINNVTTSNLSSKVSEIK+HIQ+HPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELD+KELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTI DVPMYGRLRTRMTPAKEKNPDFNL+AHRAAAR
Sbjct: 1374 PRAPDSLGTPNMDILMAKAEEPTPLVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKAHIQNHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDIKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIGDVPMYGRLRTRMTPAKEKNPDFNLAAHRAAAR 1639          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 356 bits (914), Expect = 2.070e-108
Identity = 172/252 (68.25%), Postives = 205/252 (81.35%), Query Frame = 1
Query:   19 LGTPNMDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAKEKNPDFNL 774
            L  P++D +M    EP     PP+ +MDRIHF+INNV+ SNL +KV+EI++ I  HPE++ W+ANYLVVKRI TQPNFH LYL  +  L+ P L DA+L+SVFHNVGKLLRS KIITSTSERSLLKNLGSWLG+ TL R++PVLQR+LD+KELLF+GYETGRLIAVTPFVAKILEGA    S VF+PPNPW+MGL SALHEMY+LEDLKMNIKFE+EML +K N+ + DVP YGRL  R  P K+KNPDFN+
Sbjct: 1127 LDAPDIDSIMLSTREPPTAEPPPDAIMDRIHFIINNVSPSNLEAKVAEIRAQIAGHPEYYAWMANYLVVKRISTQPNFHALYLQFIDCLDAPGLADAVLRSVFHNVGKLLRSGKIITSTSERSLLKNLGSWLGQTTLARNRPVLQRQLDLKELLFRGYETGRLIAVTPFVAKILEGAQ--RSAVFQPPNPWLMGLLSALHEMYDLEDLKMNIKFEVEMLVKKLNIRLEDVPKYGRLARRRPPVKDKNPDFNV 1376          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A7S2RRA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRA8_9STRA)

HSP 1 Score: 300 bits (767), Expect = 5.560e-96
Identity = 152/249 (61.04%), Postives = 186/249 (74.70%), Query Frame = 1
Query:   34 MDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAKEKNPDFNLSA 780
            M+++M    E  A   PP+ V+ R+H  +NNV+ SNL  KVSE ++ +    EH  W  +YLV KRI TQ NFH LYL  V ++ETP LM +IL SVFHNV  LL S KI TSTS+RSLLKNLGSWLG++TL R+KP+LQR LDMKELL QGYETGRLIAVTPFVAKILEG    ++RVF+PPNPWIMGL   +HE+Y+L+DLKMNI+FEIE+LC+   + I DVP +G L  R+ P KEKNPDFN+ A
Sbjct:  176 MELIMPIGAEAPAASPPPDMVVQRVHLALNNVSMSNLEQKVSETRTMLSV--EHLAWFGSYLVTKRISTQANFHQLYLAFVLKMETPELMMSILASVFHNVAILLSSPKITTSTSDRSLLKNLGSWLGQMTLARNKPILQRNLDMKELLCQGYETGRLIAVTPFVAKILEGGK--DTRVFRPPNPWIMGLMGVMHELYDLDDLKMNIRFEIEVLCKHLGLKIDDVPKHGVLVHRLQPRKEKNPDFNVRA 420          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A7R9VXD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXD3_9STRA)

HSP 1 Score: 282 bits (721), Expect = 6.740e-87
Identity = 145/234 (61.97%), Postives = 177/234 (75.64%), Query Frame = 1
Query:   82 PPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELET--PPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMY-GRLRTRMTPAKEKNPDFNL 774
            PP+ V+DR+ F+INNV+ SN+  K  E+K  +   P++ GWL NYLVVKRI TQPNFH LYL  + +L      L++AIL SV+ NVGKLLRS KI TSTSERSLLKNLGSWLG+ITL R++P+LQ  LD KELLFQGYETG LIAVTPFVAKILEGA S  S VF+PPNPW+MGL      +Y +EDLKMNIKFE+E+LC+  NV + D+P+    L  R+ P KE+NPDFN+
Sbjct:  199 PPDAVLDRVQFLINNVSPSNVEQKAQELKDMLA--PKYFGWLGNYLVVKRISTQPNFHSLYLAFLDQLGDYGKGLVEAILSSVYLNVGKLLRSPKITTSTSERSLLKNLGSWLGQITLARNRPILQIMLDCKELLFQGYETGMLIAVTPFVAKILEGAKS--SVVFRPPNPWLMGLLGVFCALYGVEDLKMNIKFEVEVLCKNLNVKLEDIPIRTSELAKRIPPVKERNPDFNI 428          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: K0TIV2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIV2_THAOC)

HSP 1 Score: 285 bits (729), Expect = 1.330e-83
Identity = 147/240 (61.25%), Postives = 181/240 (75.42%), Query Frame = 1
Query:   82 PPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELET--PPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAKEKNPDFNLSAHRAAA 795
            PP+ V+DR+ F++NN++ SN   K ++++  +    ++ GWL N+LVVKRI TQPNFH LYL  ++ L      L++AIL SV+ NVGKLLRSQKI TSTSERSLLKNLGSWLG+ITL R++P+LQ  LD KELL QGYETG LIAVTPFVAKILEGA   NS VF+PPNPW+MGL S    +Y ++DLKMNIKFE+E+LC+   V + DVPM   L TR+ P KEKNPDFNL A  AAA
Sbjct:  875 PPDAVLDRVQFLVNNLSMSNCKEKSNDLREILDR--KYFGWLGNFLVVKRISTQPNFHALYLSFLENLGEYGRGLVEAILASVYVNVGKLLRSQKITTSTSERSLLKNLGSWLGQITLARNRPILQIMLDCKELLLQGYETGMLIAVTPFVAKILEGAK--NSIVFRPPNPWLMGLLSVFRALYCVDDLKMNIKFEVEVLCKNLGVKLEDVPMRTDLSTRVPPVKEKNPDFNLKASSAAA 1110          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A7S0UKJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKJ1_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.760e-82
Identity = 133/245 (54.29%), Postives = 173/245 (70.61%), Query Frame = 1
Query:   55 AEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELET--PPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYG-RLRTRMTPAKEKNPDFNLSA 780
            A+E     +PP+ ++DRI F+INN+  SN+ SK  E+K  ++  P++  WLA++LVVKRI TQ N+H LYL  +  L      L++AIL S + N+GKLLRS KI TS+SERS LKNLG WLG+ITL R++P+LQ  LD KELL QGYETG+LIAV PF+AK LEGA   NS VF+PPNPW+MGL      +Y +E LKMNIKFE+E+LC+     + D+P+    L  R+ P KEKNPDFN+ A
Sbjct:   37 ADEEQEHESPPQNLLDRIQFLINNLAPSNVESKSQELKDLLE--PKYFSWLAHFLVVKRISTQANYHSLYLSFLDNLGEYGKGLLEAILDSAYRNIGKLLRSPKITTSSSERSYLKNLGIWLGQITLARNRPILQLMLDCKELLLQGYETGKLIAVAPFLAKTLEGAK--NSGVFRPPNPWLMGLLGVFRSVYNVEGLKMNIKFEVEVLCKNLGTRLEDIPLKDMELAKRVAPVKEKNPDFNIKA 277          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A7S2UP57_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP57_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.930e-82
Identity = 147/246 (59.76%), Postives = 178/246 (72.36%), Query Frame = 1
Query:   52 KAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELET--PPLMDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGR-LRTRMTPAKEKNPDFNLSA 780
            K +  T    PP+ V+DR+ F+INNV+ SN+  K  E+K  +   P++ GWL +YLVVKRI TQPNFH LYL  + +L      L+DAIL SV+ NVGKLLRS KI TSTSERSLLKNLGSWLG+ITL R++P+LQ  LD KELLFQGYETG LIAVTPFVAKILEGA   NS VF+PPNPW+MGL S    +Y +EDLKMNIKFE+E+LC+     + D+P+    L  R  P K KNPDFNL +
Sbjct: 1128 KVDSETQHEAPPDSVLDRVQFLINNVSPSNVEQKSQELKDMLD--PKYFGWLGHYLVVKRISTQPNFHSLYLTFLDQLGDYGKGLVDAILSSVYLNVGKLLRSPKITTSTSERSLLKNLGSWLGQITLARNRPILQIMLDCKELLFQGYETGMLIAVTPFVAKILEGAK--NSSVFRPPNPWLMGLLSVFRALYGVEDLKMNIKFEVEVLCKNMGFKLEDIPLRTNDLSKRFPPEKAKNPDFNLKS 1369          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A7S3NMR3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMR3_9STRA)

HSP 1 Score: 280 bits (715), Expect = 9.070e-82
Identity = 149/270 (55.19%), Postives = 188/270 (69.63%), Query Frame = 1
Query:   31 NMDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKEL-----------ETPPLMD--------AILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVP---MYGRLRTRMTPAKEKNPDFNL 774
            NM  LM  ++E    V P E V+D +H V NNV+ SN+  KV +I   ++  PEH  W ANYLVVKRI TQPNFH LYLD +++L              PLM         A++ +V+HN+ KLLRS KI TSTSERSLLKNLGSWLG+ITL +++P+LQR LD+KELLFQGYETGRLIA+ PFVAKILEGA   NS VF+PPNPW+MGL + L E+Y +EDLKMNIKFEIE+L +   + + ++P   +   L  R+TP KE+NPDFN+
Sbjct:  133 NMSELMPASQEAPPTVVPSEIVLDCVHMVFNNVSQSNVDDKVKDIAPLLK--PEHFPWFANYLVVKRISTQPNFHSLYLDFLEKLGDFENQNKKKGNANPLMTPRARALNKAVVNAVYHNIAKLLRSNKITTSTSERSLLKNLGSWLGQITLQKNRPILQRRLDVKELLFQGYETGRLIAICPFVAKILEGAK--NSIVFRPPNPWLMGLMAVLGELYHVEDLKMNIKFEIEVLAKHLGIKLDEIPTTILSQSLAKRLTPHKERNPDFNV 398          
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Match: A0A7S3YCC2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCC2_HETAK)

HSP 1 Score: 258 bits (659), Expect = 1.380e-81
Identity = 138/264 (52.27%), Postives = 186/264 (70.45%), Query Frame = 1
Query:    4 RAPDSLGTP-NMDILMAKAE-EPTALVNPPEGVMDRIHFVINNVTTSNLSSKVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPLMDA-ILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVLQRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMGLFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRL--RTRMTPAKEKNPDFNLSA 780
            R P +LG P ++  LM   +    A  +PPE V DR HF+INN++++NL  K  E++  + + P H  WLA YLVVKRI TQPNFH LYL ++ +L     + A +L +V+ +V +LL S KI+TST+ERSLLKNLGSWLG+ TL RD+PVLQR LD++ LL +GYETGRLIAV PF AK+L GA    S+VF+PPNPW+MGL + L E+Y+++ LKMNIKFE+E+LC+   +++ +VP  GR+  R    P K KNPDF + A
Sbjct:    6 RGPVALGAPLDLSELMPTVDLSAPAPADPPEAVRDRCHFLINNISSANLEPKAEELRR-VLADPAHLPWLAGYLVVKRISTQPNFHGLYLAMLDKLGLGERLGAPLLAAVYRSVARLLLSPKIVTSTAERSLLKNLGSWLGQATLARDRPVLQRALDLRALLLRGYETGRLIAVVPFAAKVLGGAQG--SQVFRPPNPWLMGLLAVLRELYDVDGLKMNIKFEVEVLCKALGLSLGEVPK-GRVLRREAAAPQKLKNPDFMVKA 265          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13554.2645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN2_ECTSI1.860e-16899.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXN6_9PHAE8.590e-16897.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHM2_9STRA2.070e-10868.25CCR4-Not complex component, Not1-domain-containing... [more]
A0A7S2RRA8_9STRA5.560e-9661.04Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9VXD3_9STRA6.740e-8761.97Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
K0TIV2_THAOC1.330e-8361.25Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0UKJ1_9STRA1.760e-8254.29Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2UP57_9STRA2.930e-8259.76Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3NMR3_9STRA9.070e-8255.19Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3YCC2_HETAK1.380e-8152.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13554contigE-fasciculatus_F_contig13554:74..3160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score513.5
Seed ortholog evalue7.2e-143
Seed eggNOG ortholog2880.D8LMN2
KEGG koko:K12604
KEGG Pathwayko03018,map03018
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5103@1,KOG1831@2759
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size940
Cds size939
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13554.2645.1prot_E-fasciculatus_F_contig13554.2645.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13554 74..3160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927852.7503633-CDS-E-fasciculatus_F_contig13554:73..3911622927852.7503633-CDS-E-fasciculatus_F_contig13554:73..391Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 74..391 -
1695995723.6244023-CDS-E-fasciculatus_F_contig13554:73..3911695995723.6244023-CDS-E-fasciculatus_F_contig13554:73..391Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 74..391 -
1622927852.767558-CDS-E-fasciculatus_F_contig13554:995..11301622927852.767558-CDS-E-fasciculatus_F_contig13554:995..1130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 996..1130 -
1695995723.6378477-CDS-E-fasciculatus_F_contig13554:995..11301695995723.6378477-CDS-E-fasciculatus_F_contig13554:995..1130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 996..1130 -
1622927852.7797706-CDS-E-fasciculatus_F_contig13554:1728..19261622927852.7797706-CDS-E-fasciculatus_F_contig13554:1728..1926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 1729..1926 -
1695995723.6493213-CDS-E-fasciculatus_F_contig13554:1728..19261695995723.6493213-CDS-E-fasciculatus_F_contig13554:1728..1926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 1729..1926 -
1622927852.7904148-CDS-E-fasciculatus_F_contig13554:2351..24861622927852.7904148-CDS-E-fasciculatus_F_contig13554:2351..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 2352..2486 -
1695995723.6652336-CDS-E-fasciculatus_F_contig13554:2351..24861695995723.6652336-CDS-E-fasciculatus_F_contig13554:2351..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 2352..2486 -
1622927852.8042576-CDS-E-fasciculatus_F_contig13554:3007..31601622927852.8042576-CDS-E-fasciculatus_F_contig13554:3007..3160Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 3008..3160 -
1695995723.6808534-CDS-E-fasciculatus_F_contig13554:3007..31601695995723.6808534-CDS-E-fasciculatus_F_contig13554:3007..3160Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13554 3008..3160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13554.2645.1

>prot_E-fasciculatus_F_contig13554.2645.1 ID=prot_E-fasciculatus_F_contig13554.2645.1|Name=mRNA_E-fasciculatus_F_contig13554.2645.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=313bp
PRAPDSLGTPNMDILMAKAEEPTALVNPPEGVMDRIHFVINNVTTSNLSS
KVSEIKSHIQSHPEHHGWLANYLVVKRICTQPNFHDLYLDLVKELETPPL
MDAILKSVFHNVGKLLRSQKIITSTSERSLLKNLGSWLGKITLGRDKPVL
QRELDMKELLFQGYETGRLIAVTPFVAKILEGAPSGNSRVFKPPNPWIMG
LFSALHEMYELEDLKMNIKFEIEMLCQKFNVTIADVPMYGRLRTRMTPAK
EKNPDFNLSAHRAAARAEAERLREESAAAAASATAAGGGAGNKNAGAAGA
GASPEDGAGRGEE
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mRNA from alignment at E-fasciculatus_F_contig13554:74..3160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13554.2645.1 ID=mRNA_E-fasciculatus_F_contig13554.2645.1|Name=mRNA_E-fasciculatus_F_contig13554.2645.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3087bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13554:74..3160- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAGGGCACCCGACAGCCTCGGAACGCCGAACATGGACATCCTCATGGC CAAGGCGGAGGAGCCCACGGCTCTGGTGAACCCGCCGGAGGGGGTGATGG ACCGTATTCACTTCGTCATCAACAACGTCACCACGTCCAACCTTTCGTCG AAGGTGTGTGTGTGTGTGTCTGTATGTGCCATTGTGTTGTGTACTCGGCC GTGTGTACAACGTCTTCGGTGTAGGCATTTTATGCTTATGGCTACCGGTT GCCGTATCCGTGGTGCCTTTGCTGGGGGGGTTGTTTCTGTTTTTTCACGA GTACATAACTCACGACGTTGTCCGCCACCGTCATGTACTTGAAGCTTTTT CTAGTCTCACTCGTTGTTGTTTCACGCTGTACCGCATTGTGTTAAATAGC CACTGCGGTGTGTCAAATCGCCCGTACTGCGCTACATACGCGCACGACCA CCACATGCAATGCGCTCTCGTGATTGTTTCACGCTGTACCGTATTGTGTC AAATAGCCACTGCGGTGTGTCAAATCGACCGTACTGCGCTACGCGTACAA CCACCACATGCAATGCGTGACATGTTACCTTGCCTGGCCTTGTAGGCTTC GCAGAAACGCATGCCCCTTCCAGAACCCAGTGGCCAGCTAGCTCTCCCCT CCACCCCCGTGGGCAACGTTACAGGTGTCGGAGATTAAGTCGCACATTCA GAGCCACCCGGAGCACCACGGTTGGCTGGCCAACTACCTGGTGGTGAAGC GCATCTGCACGCAGCCGAACTTCCACGACCTTTACTTGGACCTTGTCAAG GAGCTTGAGGTGAAAACGAAAGAGATGATAAGGCCCCCCCACTATCCAGC TATAGGTGGACGTGATCTTCTTGCCACGGGTGTGTTTTGAATGCGTTTAC CGGGCGAAAGCTAGATATCTATCGCGGTCCTTGCGCGCCATGGCAGGAAG TGAGTCAGTGGGAGGAGCGGGGAACTTTGATGCAGTGTGCTCTGTCTCGT CGGATGCCCACGTCCCAGCCTTACCGACACCGACGTAAAAAATGCGATGC TTTTCCCGTCATGCCCCGTCCCCCCGTTCGTTGCGCATGGGATGGGAGGA ACATGCGACCACACCACTTGTTTTGACGCACGCAACGCTCGCTCTTGTCT GGTCCCTCGCTCCTCATCCCGCCGCACACGATACACGAACAAATCGAACA CACATCGTCGAACATACTAATAAAAATAAAACAGACCCCGCCGCTGATGG ACGCGATCCTCAAGAGCGTGTTTCACAACGTCGGCAAGCTGCTCCGGTCG CAGAAGATCATCACGTCCACCTCGGAGCGCTCCCTTCTCAAGAACCTGGG CTCCTGGCTCGGGAAGATCACGCTGGGACGGGACAAGCCCGTCCTACAGA GGGAGCTGGACATGAAGGAGCTTCTCTTCCAGGTTGGTTTTGCGCGTGTA GATTGTGTGTGTGTGTGTGTGTGTTTTACGTCCATGTGCAATGTGCATGC ATGATGCCTCTGGTGGTCGTATGAGCGAGTTTCGATGCGTGTAGATACCG CACACAGCGGGACGGCGCTCCAGTTGTACTTTTTGTTGCCGGTGCTGTGC GCGAGAGAAGCATCATCTATGTTTTGGCCCGTTTTTTTTCTGTTTCCTCC TCGAGCACGCTTTCTCCCTTCTCCCTGCCCTCTCCCTCTCTCTTTCTCTT TCTGTCTTGCTCTCTCTCTATTCCTTTTGTCTTGCCCTCTCTCTCTCTCG CTTCCTCCCCGTCTTGCTCGGAGGATAAGGATACCCTCCGCACACTCTCA CTCTTGTAATCACGCGTTTTTTCTCCTGCTTCCTTCTCGTGTTCGTTGAG CGGGCCGGACTCCATATGGGACAGACGAGGTGTTGGCAGGCAGAGATTTT TGTGTTGGCCGTGGTGTTGTTGCCAGCAGCTCCGTTTTCAGACGCTGCTG CTCTACAACAGAATTTTCCCGGAAGTTTCCTTGGGTTGATTTTCTCTCTC GCGGGTTGGCGCCTTGACTTGCTCGCGCAGGGGTACGAGACGGGGCGCCT GATCGCGGTGACACCGTTCGTGGCGAAGATTCTGGAGGGGGCCCCGTCGG GCAACAGCCGCGTCTTCAAGCCGCCGAACCCGTGGATCATGGGGCTCTTC TCGGCCTTGCACGAGGTGTGTTTTGTGGTGTTGTTTTCGTCGTCGTCAAC TAGTCGTGTCTGGGCGGGGGCCAGAGTGTCGTTGGGTTTGGTACATGTAG TCGGCAGTACGAGTTGTGTTGTGTTGATGTCGTCAAAAGAAGTCGTGTCT GGACAGGCCAGAGTGTCGGTGAGTTTGTTTGTCGTCGGCCGCCGCCGAAC TTTAGAGCGCACGCGCGACAACGGGAGGCGCTTGCTTTGTCATTTGGTTG TGGTGGTGATGGGTGATGGTGGCGGTCTCGCTTTACTTGAGGCTACATAT TTGCCCCCGCGGGTTGGTTGCTTGGGTCACTTAGCACCTCACCACCCTCG CCGTTCTTCCCTGCGAGATTTTCAGCAGAAGGTCCTCTGCTGTGCGTGTC CAACACTACCCTGGCTATCCTCCCCGCAGTCTCCCTCTTTCTGTCTGTCT CTCTCTCTCGGTCTCTCTTTCTATCTCTCTGTGTGTCTCTCTCGGTCTCT CTCTCGGTCTGTCTATCTCCCCCCCCTATCTCCCTCTCGGGAGCTGACTC GACCCTTTCCTTCCCGCTCGCTGCGCCGATGCCTGGCCGTTTATCTACCC CCCGTCCCCCCCTCCCCAGATGTATGAGCTGGAAGACCTCAAGATGAACA TCAAGTTCGAGATCGAGATGCTCTGCCAGAAGTTCAACGTCACCATCGCG GACGTGCCCATGTACGGCCGGCTCCGCACGCGCATGACCCCGGCCAAGGA GAAGAACCCGGACTTCAACCTCTCGGCCCACCGGGCCGCGGCCCGCGCGG AAGCCGAGCGCTTGCGCGAGGAATCGGCGGCCGCGGCCGCCTCGGCGACG GCGGCGGGCGGCGGTGCCGGCAACAAGAACGCAGGCGCCGCCGGCGCCGG GGCGTCGCCCGAGGACGGGGCGGGGAGAGGTGAGGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13554:74..3160-

>mRNA_E-fasciculatus_F_contig13554.2645.1 ID=mRNA_E-fasciculatus_F_contig13554.2645.1|Name=mRNA_E-fasciculatus_F_contig13554.2645.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1878bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13554:74..3160- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAGGGCACCCGACAGCCTCGGAACGCCGAACATGGACATCCTCATGGC
CAAGGCGGAGGAGCCCACGGCTCTGGTGAACCCGCCGGAGGGGGTGATGG
ACCGTATTCACTTCGTCATCAACAACGTCACCACGTCCAACCTTTCGTCG
AAGCCGAGGGCACCCGACAGCCTCGGAACGCCGAACATGGACATCCTCAT
GGCCAAGGCGGAGGAGCCCACGGCTCTGGTGAACCCGCCGGAGGGGGTGA
TGGACCGTATTCACTTCGTCATCAACAACGTCACCACGTCCAACCTTTCG
TCGAAGGTGTCGGAGATTAAGTCGCACATTCAGAGCCACCCGGAGCACCA
CGGTTGGCTGGCCAACTACCTGGTGGTGAAGCGCATCTGCACGCAGCCGA
ACTTCCACGACCTTTACTTGGACCTTGTCAAGGAGCTTGAGGTGTCGGAG
ATTAAGTCGCACATTCAGAGCCACCCGGAGCACCACGGTTGGCTGGCCAA
CTACCTGGTGGTGAAGCGCATCTGCACGCAGCCGAACTTCCACGACCTTT
ACTTGGACCTTGTCAAGGAGCTTGAGACCCCGCCGCTGATGGACGCGATC
CTCAAGAGCGTGTTTCACAACGTCGGCAAGCTGCTCCGGTCGCAGAAGAT
CATCACGTCCACCTCGGAGCGCTCCCTTCTCAAGAACCTGGGCTCCTGGC
TCGGGAAGATCACGCTGGGACGGGACAAGCCCGTCCTACAGAGGGAGCTG
GACATGAAGGAGCTTCTCTTCCAGACCCCGCCGCTGATGGACGCGATCCT
CAAGAGCGTGTTTCACAACGTCGGCAAGCTGCTCCGGTCGCAGAAGATCA
TCACGTCCACCTCGGAGCGCTCCCTTCTCAAGAACCTGGGCTCCTGGCTC
GGGAAGATCACGCTGGGACGGGACAAGCCCGTCCTACAGAGGGAGCTGGA
CATGAAGGAGCTTCTCTTCCAGGGGTACGAGACGGGGCGCCTGATCGCGG
TGACACCGTTCGTGGCGAAGATTCTGGAGGGGGCCCCGTCGGGCAACAGC
CGCGTCTTCAAGCCGCCGAACCCGTGGATCATGGGGCTCTTCTCGGCCTT
GCACGAGGGGTACGAGACGGGGCGCCTGATCGCGGTGACACCGTTCGTGG
CGAAGATTCTGGAGGGGGCCCCGTCGGGCAACAGCCGCGTCTTCAAGCCG
CCGAACCCGTGGATCATGGGGCTCTTCTCGGCCTTGCACGAGATGTATGA
GCTGGAAGACCTCAAGATGAACATCAAGTTCGAGATCGAGATGCTCTGCC
AGAAGTTCAACGTCACCATCGCGGACGTGCCCATGTACGGCCGGCTCCGC
ACGCGCATGACCCCGGCCAAGGAGAAGAACCCGGACTTCAACCTCTCGGC
CCACCGGGCCGCGGCCCGCGCGGAAGCCGAGCGCTTGCGCGAGGAATCGG
CGGCCGCGGCCGCCTCGGCGACGGCGGCGGGCGGCGGTGCCGGCAACAAG
AACGCAGGCGCCGCCGGCGCCGGGGCGTCGCCCGAGGACGGGGCGGGGAG
AGGTGAGGAAATGTATGAGCTGGAAGACCTCAAGATGAACATCAAGTTCG
AGATCGAGATGCTCTGCCAGAAGTTCAACGTCACCATCGCGGACGTGCCC
ATGTACGGCCGGCTCCGCACGCGCATGACCCCGGCCAAGGAGAAGAACCC
GGACTTCAACCTCTCGGCCCACCGGGCCGCGGCCCGCGCGGAAGCCGAGC
GCTTGCGCGAGGAATCGGCGGCCGCGGCCGCCTCGGCGACGGCGGCGGGC
GGCGGTGCCGGCAACAAGAACGCAGGCGCCGCCGGCGCCGGGGCGTCGCC
CGAGGACGGGGCGGGGAGAGGTGAGGAA
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