mRNA_E-fasciculatus_F_contig13533.2630.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13533.2630.1
Unique NamemRNA_E-fasciculatus_F_contig13533.2630.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13533.2630.1 vs. uniprot
Match: D7FUT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT7_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.010e-67
Identity = 116/133 (87.22%), Postives = 119/133 (89.47%), Query Frame = 1 
Query:  127 GGGMTLLQAEEXXSSNNGTRARHQTNFILAGACTARAVSLVVVWGTGGWVPFTAVSDLLYIALFGSLILLYCEMRSILAVASSHRAVRLGVFLSLTGVLAVSLVICTARWAADPASRKSLALRKFLYLELGIT 525
            GGGMT      XX   NGTRARHQTNFILAGACTA+A+SL VVWGTGGWVPFTAVSDLLYIALFGSLILLY EMR+ILAVASSHR VRLGVFLSL GVL VSLVICTARWAADPASRKSLALRKFLYLELGIT
Sbjct:   44 GGGMTXXXXXXXXXXXNGTRARHQTNFILAGACTAKAISLGVVWGTGGWVPFTAVSDLLYIALFGSLILLYVEMRNILAVASSHRTVRLGVFLSLAGVLVVSLVICTARWAADPASRKSLALRKFLYLELGIT 176
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13533.2630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUT7_ECTSI1.010e-6787.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13533contigE-fasciculatus_F_contig13533:2749..3598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size530
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927851.0246146-CDS-E-fasciculatus_F_contig13533:2748..28031622927851.0246146-CDS-E-fasciculatus_F_contig13533:2748..2803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13533 2749..2803 +
1695995722.769212-CDS-E-fasciculatus_F_contig13533:2748..28031695995722.769212-CDS-E-fasciculatus_F_contig13533:2748..2803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13533 2749..2803 +
1622927851.0427868-CDS-E-fasciculatus_F_contig13533:3125..35981622927851.0427868-CDS-E-fasciculatus_F_contig13533:3125..3598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13533 3126..3598 +
1695995722.7791348-CDS-E-fasciculatus_F_contig13533:3125..35981695995722.7791348-CDS-E-fasciculatus_F_contig13533:3125..3598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13533 3126..3598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13533.2630.1prot_E-fasciculatus_F_contig13533.2630.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13533 2749..3598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13533.2630.1

>prot_E-fasciculatus_F_contig13533.2630.1 ID=prot_E-fasciculatus_F_contig13533.2630.1|Name=mRNA_E-fasciculatus_F_contig13533.2630.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=176bp
GVSRLLRVVAGGRRVPPPGRYLRVGVPPEQAGIGCRTAPGPAGGGMTLLQ
AEEEESSNNGTRARHQTNFILAGACTARAVSLVVVWGTGGWVPFTAVSDL
LYIALFGSLILLYCEMRSILAVASSHRAVRLGVFLSLTGVLAVSLVICTA
RWAADPASRKSLALRKFLYLELGIT*
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mRNA from alignment at E-fasciculatus_F_contig13533:2749..3598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13533.2630.1 ID=mRNA_E-fasciculatus_F_contig13533.2630.1|Name=mRNA_E-fasciculatus_F_contig13533.2630.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=850bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13533:2749..3598+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGTCTCTCGGCTCCTGCGTGTTGTTGCTGGAGGCCGGCGTGTTCCTCC
TCCTGGTGAGTGGGATGGGTTGGTTACGTCGATACAGTACACAATAAAAT
ACACCCATGAAACAAACATACGCCGCGGTTTTATGTATTGACAAAGGGCT
ACCTGTTACTGTGTATTGGAACGCCGCAGCATGTGAAAAGGAAGAGAGCT
ATTGAAGAGCTACGCATGACGTACAAAAACGAAAGGATGGCGGCTATATG
TGGAGAAGAACAAGCAAAGCTCGTTGCCGACTGTATGCATACAGTAGCGT
TCGAGTGTTTATCAGAGCACCAACGGGGAGGGGATGAACACCGACCCGCT
TGCCTCCCCACCGCCTCCTCCGCCAAGGCCGTTATCTCCGGGTGGGAGTT
CCACCGGAGCAGGCAGGAATCGGCTGTCGCACGGCACCAGGACCAGCGGG
GGGGGGGATGACCCTGCTTCAGGCCGAGGAGGAGGAGAGCAGCAACAACG
GGACCAGGGCTCGGCACCAGACGAACTTCATCCTGGCCGGCGCCTGCACG
GCCAGGGCGGTATCCCTCGTGGTGGTCTGGGGCACCGGCGGCTGGGTGCC
CTTCACGGCCGTCTCGGACCTGCTCTACATCGCCCTGTTCGGCTCCCTGA
TCCTCCTGTACTGCGAGATGAGGAGCATCTTGGCAGTGGCCAGCAGCCAC
CGAGCGGTCAGGCTCGGGGTGTTCCTGAGCCTGACGGGCGTTCTGGCGGT
GTCTCTTGTCATCTGCACGGCGCGTTGGGCCGCCGACCCCGCTTCCAGGA
AGTCCCTGGCGCTGAGAAAGTTCCTGTACCTGGAGCTGGGCATTACGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13533:2749..3598+

>mRNA_E-fasciculatus_F_contig13533.2630.1 ID=mRNA_E-fasciculatus_F_contig13533.2630.1|Name=mRNA_E-fasciculatus_F_contig13533.2630.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1056bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13533:2749..3598+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGTCTCTCGGCTCCTGCGTGTTGTTGCTGGAGGCCGGCGTGTTCCTCC
TCCTGGGTGTCTCTCGGCTCCTGCGTGTTGTTGCTGGAGGCCGGCGTGTT
CCTCCTCCTGGCCGTTATCTCCGGGTGGGAGTTCCACCGGAGCAGGCAGG
AATCGGCTGTCGCACGGCACCAGGACCAGCGGGGGGGGGGATGACCCTGC
TTCAGGCCGAGGAGGAGGAGAGCAGCAACAACGGGACCAGGGCTCGGCAC
CAGACGAACTTCATCCTGGCCGGCGCCTGCACGGCCAGGGCGGTATCCCT
CGTGGTGGTCTGGGGCACCGGCGGCTGGGTGCCCTTCACGGCCGTCTCGG
ACCTGCTCTACATCGCCCTGTTCGGCTCCCTGATCCTCCTGTACTGCGAG
ATGAGGAGCATCTTGGCAGTGGCCAGCAGCCACCGAGCGGTCAGGCTCGG
GGTGTTCCTGAGCCTGACGGGCGTTCTGGCGGTGTCTCTTGTCATCTGCA
CGGCGCGTTGGGCCGCCGACCCCGCTTCCAGGAAGTCCCTGGCGCTGAGA
AAGTTCCTGTACCTGGAGCTGGGCATTACGTGAGCCGTTATCTCCGGGTG
GGAGTTCCACCGGAGCAGGCAGGAATCGGCTGTCGCACGGCACCAGGACC
AGCGGGGGGGGGGATGACCCTGCTTCAGGCCGAGGAGGAGGAGAGCAGCA
ACAACGGGACCAGGGCTCGGCACCAGACGAACTTCATCCTGGCCGGCGCC
TGCACGGCCAGGGCGGTATCCCTCGTGGTGGTCTGGGGCACCGGCGGCTG
GGTGCCCTTCACGGCCGTCTCGGACCTGCTCTACATCGCCCTGTTCGGCT
CCCTGATCCTCCTGTACTGCGAGATGAGGAGCATCTTGGCAGTGGCCAGC
AGCCACCGAGCGGTCAGGCTCGGGGTGTTCCTGAGCCTGACGGGCGTTCT
GGCGGTGTCTCTTGTCATCTGCACGGCGCGTTGGGCCGCCGACCCCGCTT
CCAGGAAGTCCCTGGCGCTGAGAAAGTTCCTGTACCTGGAGCTGGGCATT
ACGTGA
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