mRNA_E-fasciculatus_F_contig1347.2597.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1347.2597.1
Unique NamemRNA_E-fasciculatus_F_contig1347.2597.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1347.2597.1 vs. uniprot
Match: A0A6H5L191_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L191_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 9.420e-128
Identity = 183/195 (93.85%), Postives = 188/195 (96.41%), Query Frame = 2
Query:    2 LNTP*RETETSKGGDIAIMPDVGNLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHSGGNHFEALKALGEVEPIDGWTVQEVMLEEDRSSSS 586
            L+TP RET TSKGGD A+MPD G LILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHP RYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLH+GGNHFEALKALGEV+PIDGW VQEVMLEEDRSSS+
Sbjct:   10 LSTPWRETTTSKGGDAAVMPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPARYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGWKVQEVMLEEDRSSST 204          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1347.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L191_9PHAE9.420e-12893.85OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1347contigE-fasciculatus_F_contig1347:12174..17579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOvarian tumour, otubain
Ec32 orthologEc-07_001140.2
Exons5
Model size2168
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.74058-UTR-E-fasciculatus_F_contig1347:12173..137401622927846.74058-UTR-E-fasciculatus_F_contig1347:12173..13740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1347 12174..13740 -
1695995720.7219985-UTR-E-fasciculatus_F_contig1347:12173..137401695995720.7219985-UTR-E-fasciculatus_F_contig1347:12173..13740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1347 12174..13740 -
1622927846.8345163-UTR-E-fasciculatus_F_contig1347:17524..175791622927846.8345163-UTR-E-fasciculatus_F_contig1347:17524..17579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1347 17525..17579 -
1695995720.778493-UTR-E-fasciculatus_F_contig1347:17524..175791695995720.778493-UTR-E-fasciculatus_F_contig1347:17524..17579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1347 17525..17579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.7530165-CDS-E-fasciculatus_F_contig1347:13740..137881622927846.7530165-CDS-E-fasciculatus_F_contig1347:13740..13788Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 13741..13788 -
1695995720.7301333-CDS-E-fasciculatus_F_contig1347:13740..137881695995720.7301333-CDS-E-fasciculatus_F_contig1347:13740..13788Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 13741..13788 -
1622927846.770197-CDS-E-fasciculatus_F_contig1347:14304..144841622927846.770197-CDS-E-fasciculatus_F_contig1347:14304..14484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 14305..14484 -
1695995720.738447-CDS-E-fasciculatus_F_contig1347:14304..144841695995720.738447-CDS-E-fasciculatus_F_contig1347:14304..14484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 14305..14484 -
1622927846.7871335-CDS-E-fasciculatus_F_contig1347:15505..156581622927846.7871335-CDS-E-fasciculatus_F_contig1347:15505..15658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 15506..15658 -
1695995720.7482188-CDS-E-fasciculatus_F_contig1347:15505..156581695995720.7482188-CDS-E-fasciculatus_F_contig1347:15505..15658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 15506..15658 -
1622927846.8071737-CDS-E-fasciculatus_F_contig1347:16079..162111622927846.8071737-CDS-E-fasciculatus_F_contig1347:16079..16211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 16080..16211 -
1695995720.7581706-CDS-E-fasciculatus_F_contig1347:16079..162111695995720.7581706-CDS-E-fasciculatus_F_contig1347:16079..16211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 16080..16211 -
1622927846.820078-CDS-E-fasciculatus_F_contig1347:17491..175241622927846.820078-CDS-E-fasciculatus_F_contig1347:17491..17524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 17492..17524 -
1695995720.768714-CDS-E-fasciculatus_F_contig1347:17491..175241695995720.768714-CDS-E-fasciculatus_F_contig1347:17491..17524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1347 17492..17524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1347.2597.1prot_E-fasciculatus_F_contig1347.2597.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1347 13741..17524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1347.2597.1

>prot_E-fasciculatus_F_contig1347.2597.1 ID=prot_E-fasciculatus_F_contig1347.2597.1|Name=mRNA_E-fasciculatus_F_contig1347.2597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
MPDVGNLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRN
QAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINA
VARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHSGGNHFEAL
KALGEVEPIDGWTVQEVMLEEDRSSSSEGDQ*
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mRNA from alignment at E-fasciculatus_F_contig1347:12174..17579-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1347.2597.1 ID=mRNA_E-fasciculatus_F_contig1347.2597.1|Name=mRNA_E-fasciculatus_F_contig1347.2597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5406bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1347:12174..17579- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGAACACACCGTGAAGAGAAACAGAGACTTCAAAAGGGGGAGACATTG CAATCATGCCTGATGTGGGGAACTTAATCCTCTATCCGGTGAGCATTTCT GAGTTGTAGAGGCTGCGACCGATCAATGACGTGTACCTCATGCAGCCCGC CGCATGCGGTGGAACTTCACCTGCACCCGACACAACGCAGCGCTCCCTCT CAATACGGGTTGCCTTGCTACCGGCTTTCGCCGTGGCCATACATTCTTGC TATGCGACATAACATTTTCACCAAGCGCCCGAACCACGTTTGGAACGAAG CGTTTGGCGAAGAGCACTGCTTTGCTTCGATTGTTCTCCTGCTCGCTTTC TCACGGTTACTTTTTTCCGACGACACTCCATCCAAGTATGCTATGCAGGA TCACACCTAGGACGCTCTGACGAGAGTACCGCAGTACCGCCGTACCGGCC CCGCTCGCTATTCAAAACACATTATGTAACAGAAGTGCATGTCTCAATTA ATCGGAAACGATGCTGGGTTTAAAGAAACACGTCCCAAGTACTCGGGGTA TGCATAGACTACAGTCTAGATGCGCTCGGCGGTGGCGAAGAAATACTGCT GTATCAAGTTGTACGAACCTGGAACTTCGACCCGAGGACACTGCAGCTGC TGTTGGATAGCGGGTACAGCAGTCGGGATCCCTCCAGAGGGCGGACGGAA TCTCTTGGCACAGATAGAATGGCACAGACGTTTTGTTCGTTGAACAGGAT AGGAGCCCTCGACAGGGCGGGCGAACCTGCCTACATCATTGAAGAACCCC GTACGCTGCTGCAACAGGGGGTGTATACAGCAGTTGCAGTCTTCAAGCGT TGTACAGCAGGATGCATTTGATATTCGTATGCAGAACGCGCCACCGCCAC CGCCTGAGAAGAGAACCTGGAAGTTCAGAATTCCGGCTCAAGACACGGGA AATTTAAGAACTTGACCATACGACCACATGCTCACGGGTAATAATCCTAC ACGAATCCTACATGTATACATGAGGTGCCTGCATCAGCGTTGCGCGTCAG CGTGTGTGGGATCTCTCTGTCTCTCTCTCTCTGTGTCTCTCCCTCTCTGT CTCTCCCTTTCTGTCTCTCATTTGTTTGGTGACCGTTGATTGGGGACGAC CGGTAGCAGCCACACTCGTGCACGGTCATGTCGAAACCGTGCCGTCTTGT ATCGATACGAAGCAGGTCAGATGCTTTTGCACTCCGCTCACAAGCGTGAC GTAGACGGAGAAGCGGAATCCCGACCAGGACCTCGCCGCTCTCGTTCCGG ATGTTGAACAAACCTTCATGTAAACGCCGTCCGTCGCCACATCGCAAAAC ACATGACGGTGTAAACAGAGGGAGCTATTCCAGGCGATTCCCAATGGCGG GAAGGGGGACTGCGGCCCGGCTGCTCTATGGCACTTGATTTACGGCGGGC GCCCAACCAGCCGCGACCTAAAAGAGATGCGGAATCAGGCGGTGGACCAG GTAGGGCTGGGTGCACGGCAGCCAAGCAGCAGAGGTTCAGATCGATGGGA AGATGAAGGCCTTCGTCGCCGGAATCGTGTTGTTTTAGTTGTTTACTTTT TTTATTATACGTACGTGGGTCGGTGAACTAAGTGGCCAGATAACATTCTA TGTTGGCACGCCAGTGGGGTACGTGGTCGTTTGACTTGTACGTCGGGACA AATGCACACCCCAGGTGGCCGGTACCTGAATGGCCTAACGATTAAAACAG CAGAGCCTATCTACAACTAGGACAGCTACAACACGACCGGGCCCACCGTA ACGAGACGAGCAGGATATACCTCTGTTAGTCGTTCCGGGAGGCCGATAAA CAGTACTCAAGCCACAACAATAACACTGTGTTGACTCCCGAAACCCGCCA TGTTGTTGCTGAACCACAAAGGTTTACAGCCACCCTACTCGGTACATGGA TTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGATGCTATATAAAT GGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGATCAGCTGTTTATC AACGCAGTCGCGAGAGCACACGAGGTGCGAGCGGTTTCCGATGCATTCGC GGCTCGAATAGAGTATGGAAGGCTGCTTGTGTTGCCAGACCGCCATTTGT TTGTCTCGGACTTATACAGTTAGCGCCCGCAATTAAGAAATATTTTCAAA AGAAATTCAGGCTCACTTTTCCACGAAATATAAGAAAAAAGGGTTAAGAA ATACAGCTCAATCTGGGTTACACGATAAGAAATGTCTCAATAAGAAACAG CGACGACCGCTGCCCTACTACGTTACAAACGAGGGGTTGCAGGGGAGATG AGTGTGTCGAACAAGAAACACCCCACCCACAGATCCTCCTATCTCTCGCT CTTTACCCCCTCTCCCACTACCCCCGCCTCCCTAGTGCATTATTGGTTGT ACGACGAGGGGGTTGTGTGTGTTTTTTTTGCGGCGCCCCCTCCGGCCCTC TCTCTGGCGCTCCGGGTCTGGCACAGCACACCAAACAGGCTGCGAACCAC GACATGCTGTCTGCTGTACGGTTTTGACGGTGCTCTCCGCCAGCTCTCGT GAGCAGAGAAAATAAGAAATTGCCGATTGATTCAGCAGGATTTGGCGACG CGAAAATAAGAAACTTGACATAAGAAATTGAACGACATACGCTGAGTTTA TAGCCCACAAAAAGAATTCGAGGCTGGACCTGAAATAAGCGTTTCTTAAT TGCGGGCGCTAACTGTAGACAAGGCTTGCCATCTTACTCATGCGCCCGTC GGGACCGAACCCCGCGTTCGTGATATACGTCGTGTCCTCTGCATGCCTTG CTGCAGCTCGATGGCAACTAGCGTGTTGCGCTCGATGGCAACTAGCGTGT TGACAGTACCACCTCTACATCTTCGTCTGTCTGCCTGCCTGTCTTGTCTG TGTACGGGCAATGTCCGTCAACATTGTTTTTTACAGCAGTGTGTCTTCTC TTTGTGTTCTGGCTACTTCAAGGCACCTTTATTGTTAGTACCAGGTAGAC AAATTTTCACGTGTCCTTATTTTTTGTCAAACCTCGATGGTGAAGGTTAA CATTCGGATCCTGGTACCGGAGAAGAACAACACTCTACGTGACGAGCAAG GGAACTACGCAGGCCAGGGCACCGCTCGACGGACGTACTACATGCTTCAC AGCGGCGGCAACCACTTCGAGGCCCTCAAGGCGCTCGGCGAGGTCGAGCC CATCGACGGCTGGACGGTTCAAGAGGTGTGGAAATGAGGATTGGCGGTGG CGTTCGCGATGGCCGTGCCCCACGTTGATGGTTTAGAGCTGTTCCACAGT TGGTTTTTTGTGATGGGCGTTGTTTGCATGTTGCTACACCACCCTATCAC GAGCTGTGCTGACGCTTCGGTATTGTCGTCGGTTTTTCATACGTACACAT TGACCTGAAAACGAAGAATCCTCGCCATACGGAGGCGCAAGGGTCAGCGC TCCCACAACGAGGTATTGGCGTCACACCCCAACCGTAGTCTTAATGGAAT TCATTGTTTTTCTTGCGGCGTTGGGTGTTTCGGAGAAGGAAAGCAACGAG GGCAGGAGCCCCGTTCCTCGGAGTTTGTCCCCCGTTTGCAAGTGGTTATT TACTTTGACTAGCCCTTTATCCCGAAGTTCCATCGGAAATGTCGGGATAT CTGTTGCCCACCCTCGACTTCGCGTTGCTCACGGATGGCTTCGATTTCTG TATACATTGTGTTCGCCCTCCCTGGGTCGTCCTGCACAAAGGTGATGCTC GAGGAGGATAGGTCATCTTCGAGCGAGGGAGACCAATAGCACAATCGGAA GGCGCCGGGCACTGCTGCTGCAGGAACAAACGATAATTTACTGTATACAC AAGAGTTGGGATGGGGGAAAGCCTACAGGGCAGGGCCTTTTTGGTGGCAT TATCGACAAGAAGACATGGTGAAGCTCTCTCGTCTCCTGGAAGTGTCGAG ATTGCGAGGTGCAGACGGGGGGTGGCACGGCTAGAGAGGGGGAACGACGA CGGCGCGTATGGAGGCGAAATAGCGAAGGTGGTCAACTGGATGGCTGTTT TTCAGACAGCCGGCGGCGTTAGCTTTCGGATCCATGTCGGGTCTCTCCTC GTGCAACGAGAGGGGGTCGGGAGCTTGTTCCACTGAGCAGGTTGGCAAAA TTACGGTGGGGTCGGGGAGAAGTATAGTGGTGTTGTGGTGATGTACAGAG GACTTGACATGAGTAGGGCTGGCGCGCATGAAAGCCGTGCTTGTGCTAGT TAGTAGCAGTCGATATCGGCGGTGGCATAGATGTGTAGTCGGGTGACAAC CCTTTGTGCGTTCTGTCTGTGGGGTGGAATAGAAAAGGATAGAGGAGTGA TCGTGGGCAATACGCACCTAATCAACCCCTCGGTGCAAGAGCGTTCGCCT TACGAGAAATATTTGGAAAATAAACGGAATACCAGGTGCTTTCAGGCTGC ATCTGCCGAGCTTCGTGTGCATTTCCTCGCAGTAAGAGGGCAACACGAAG ACGAGGACGGATAATTGAAGGTCATTTGGCAGCGCCCGACATGACGATCA AGGTTGTGAATGCGTGTCTCTCGTGCGTGAAACGAGCTCGAGATGGGCAA GCTTGGTGTCGTGTGTATGATGCGTTTTGAGTGAAATAGCAAGGATGTCG GAAAACAAGCGACTGCTGATGCAGTGTGCAAGCAACGGAAATTCTTTGTG TCATGTCTCAAGACGGGCCGGTGATCGAAAAGTTGTTCTACATACGCTAG CCTTGTTCGCCACTTACAACTCAGCTTTAGGTACGTGTGCTAGTTCCGGG GGGTAGTGCTAAGCTTATCCTAGTGTTGAATAAAGCACGCTCATGTCAAA CGGTGGCACTGGCTTATGGCTCTCTGAATTTGTGCGTTTACATTCAAGTG GGGTGCTTGAACATTATGCCATGTAGTGCTGAGCTTATCATAGTGTTGAA AGCACGCTCATGCCACAGGGTGGCACCGGATGGCTTTCTGTATGAATATG TATATCCTGTTTACATTCAAGTGTCCGTGCTTGAAATTTTGCCGTGTAAT GCTGAGCTTATCCTAGTGTTGAAAGCACGCTCATGCCACAGGGTGGCGCT GGCTTATGGCTCTCTGTATATGTGTTTCCTGTTTACGTTCAAGTGTCAGT TCTGAACACTATGCCATGTATATTGTCGTCATGCACAGCCAACAAGGCCA TGTCCTAGGGTCATATATACGGGTTTTTGACATTCCAGGGCACTTTTCGG AGTCCGATTTTGGTGAACCGGTTCCACGCCTGGCAATATGTCTCGCTACC ACGTGGTGTGTCGTGGTGGGCTGTGCTCGTTGTACGCGTGGAACAGGGGA CGTACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1347:12174..17579-

>mRNA_E-fasciculatus_F_contig1347.2597.1 ID=mRNA_E-fasciculatus_F_contig1347.2597.1|Name=mRNA_E-fasciculatus_F_contig1347.2597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1347:12174..17579- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGATGTGGGGAACTTAATCCTCTATCCGATGCCTGATGTGGGGAA
CTTAATCCTCTATCCGAGGGAGCTATTCCAGGCGATTCCCAATGGCGGGA
AGGGGGACTGCGGCCCGGCTGCTCTATGGCACTTGATTTACGGCGGGCGC
CCAACCAGCCGCGACCTAAAAGAGATGCGGAATCAGGCGGTGGACCAGAG
GGAGCTATTCCAGGCGATTCCCAATGGCGGGAAGGGGGACTGCGGCCCGG
CTGCTCTATGGCACTTGATTTACGGCGGGCGCCCAACCAGCCGCGACCTA
AAAGAGATGCGGAATCAGGCGGTGGACCAGGTTTACAGCCACCCTACTCG
GTACATGGATTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGATGC
TATATAAATGGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGATCAG
CTGTTTATCAACGCAGTCGCGAGAGCACACGAGGTTTACAGCCACCCTAC
TCGGTACATGGATTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGA
TGCTATATAAATGGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGAT
CAGCTGTTTATCAACGCAGTCGCGAGAGCACACGAGGTTAACATTCGGAT
CCTGGTACCGGAGAAGAACAACACTCTACGTGACGAGCAAGGGAACTACG
CAGGCCAGGGCACCGCTCGACGGACGTACTACATGCTTCACAGCGGCGGC
AACCACTTCGAGGCCCTCAAGGCGCTCGGCGAGGTCGAGCCCATCGACGG
CTGGACGGTTCAAGAGGTTAACATTCGGATCCTGGTACCGGAGAAGAACA
ACACTCTACGTGACGAGCAAGGGAACTACGCAGGCCAGGGCACCGCTCGA
CGGACGTACTACATGCTTCACAGCGGCGGCAACCACTTCGAGGCCCTCAA
GGCGCTCGGCGAGGTCGAGCCCATCGACGGCTGGACGGTTCAAGAGGTGA
TGCTCGAGGAGGATAGGTCATCTTCGAGCGAGGGAGACCAATAGGTGATG
CTCGAGGAGGATAGGTCATCTTCGAGCGAGGGAGACCAATAG
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