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Homology
BLAST of mRNA_E-fasciculatus_F_contig1347.2597.1 vs. uniprot
Match: A0A6H5L191_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L191_9PHAE) HSP 1 Score: 387 bits (993), Expect = 9.420e-128 Identity = 183/195 (93.85%), Postives = 188/195 (96.41%), Query Frame = 2
Query: 2 LNTP*RETETSKGGDIAIMPDVGNLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHSGGNHFEALKALGEVEPIDGWTVQEVMLEEDRSSSS 586
L+TP RET TSKGGD A+MPD G LILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHP RYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLH+GGNHFEALKALGEV+PIDGW VQEVMLEEDRSSS+
Sbjct: 10 LSTPWRETTTSKGGDAAVMPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPARYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGWKVQEVMLEEDRSSST 204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ovarian tumour, otubain |
| Ec32 ortholog | Ec-07_001140.2 |
| Exons | 5 |
| Model size | 2168 |
| Cds size | 546 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1347.2597.1 >prot_E-fasciculatus_F_contig1347.2597.1 ID=prot_E-fasciculatus_F_contig1347.2597.1|Name=mRNA_E-fasciculatus_F_contig1347.2597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
MPDVGNLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRN QAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINA VARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHSGGNHFEAL KALGEVEPIDGWTVQEVMLEEDRSSSSEGDQ* back to topmRNA from alignment at E-fasciculatus_F_contig1347:12174..17579- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1347.2597.1 ID=mRNA_E-fasciculatus_F_contig1347.2597.1|Name=mRNA_E-fasciculatus_F_contig1347.2597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5406bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1347:12174..17579- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GCTGAACACACCGTGAAGAGAAACAGAGACTTCAAAAGGGGGAGACATTG
CAATCATGCCTGATGTGGGGAACTTAATCCTCTATCCGGTGAGCATTTCT
GAGTTGTAGAGGCTGCGACCGATCAATGACGTGTACCTCATGCAGCCCGC
CGCATGCGGTGGAACTTCACCTGCACCCGACACAACGCAGCGCTCCCTCT
CAATACGGGTTGCCTTGCTACCGGCTTTCGCCGTGGCCATACATTCTTGC
TATGCGACATAACATTTTCACCAAGCGCCCGAACCACGTTTGGAACGAAG
CGTTTGGCGAAGAGCACTGCTTTGCTTCGATTGTTCTCCTGCTCGCTTTC
TCACGGTTACTTTTTTCCGACGACACTCCATCCAAGTATGCTATGCAGGA
TCACACCTAGGACGCTCTGACGAGAGTACCGCAGTACCGCCGTACCGGCC
CCGCTCGCTATTCAAAACACATTATGTAACAGAAGTGCATGTCTCAATTA
ATCGGAAACGATGCTGGGTTTAAAGAAACACGTCCCAAGTACTCGGGGTA
TGCATAGACTACAGTCTAGATGCGCTCGGCGGTGGCGAAGAAATACTGCT
GTATCAAGTTGTACGAACCTGGAACTTCGACCCGAGGACACTGCAGCTGC
TGTTGGATAGCGGGTACAGCAGTCGGGATCCCTCCAGAGGGCGGACGGAA
TCTCTTGGCACAGATAGAATGGCACAGACGTTTTGTTCGTTGAACAGGAT
AGGAGCCCTCGACAGGGCGGGCGAACCTGCCTACATCATTGAAGAACCCC
GTACGCTGCTGCAACAGGGGGTGTATACAGCAGTTGCAGTCTTCAAGCGT
TGTACAGCAGGATGCATTTGATATTCGTATGCAGAACGCGCCACCGCCAC
CGCCTGAGAAGAGAACCTGGAAGTTCAGAATTCCGGCTCAAGACACGGGA
AATTTAAGAACTTGACCATACGACCACATGCTCACGGGTAATAATCCTAC
ACGAATCCTACATGTATACATGAGGTGCCTGCATCAGCGTTGCGCGTCAG
CGTGTGTGGGATCTCTCTGTCTCTCTCTCTCTGTGTCTCTCCCTCTCTGT
CTCTCCCTTTCTGTCTCTCATTTGTTTGGTGACCGTTGATTGGGGACGAC
CGGTAGCAGCCACACTCGTGCACGGTCATGTCGAAACCGTGCCGTCTTGT
ATCGATACGAAGCAGGTCAGATGCTTTTGCACTCCGCTCACAAGCGTGAC
GTAGACGGAGAAGCGGAATCCCGACCAGGACCTCGCCGCTCTCGTTCCGG
ATGTTGAACAAACCTTCATGTAAACGCCGTCCGTCGCCACATCGCAAAAC
ACATGACGGTGTAAACAGAGGGAGCTATTCCAGGCGATTCCCAATGGCGG
GAAGGGGGACTGCGGCCCGGCTGCTCTATGGCACTTGATTTACGGCGGGC
GCCCAACCAGCCGCGACCTAAAAGAGATGCGGAATCAGGCGGTGGACCAG
GTAGGGCTGGGTGCACGGCAGCCAAGCAGCAGAGGTTCAGATCGATGGGA
AGATGAAGGCCTTCGTCGCCGGAATCGTGTTGTTTTAGTTGTTTACTTTT
TTTATTATACGTACGTGGGTCGGTGAACTAAGTGGCCAGATAACATTCTA
TGTTGGCACGCCAGTGGGGTACGTGGTCGTTTGACTTGTACGTCGGGACA
AATGCACACCCCAGGTGGCCGGTACCTGAATGGCCTAACGATTAAAACAG
CAGAGCCTATCTACAACTAGGACAGCTACAACACGACCGGGCCCACCGTA
ACGAGACGAGCAGGATATACCTCTGTTAGTCGTTCCGGGAGGCCGATAAA
CAGTACTCAAGCCACAACAATAACACTGTGTTGACTCCCGAAACCCGCCA
TGTTGTTGCTGAACCACAAAGGTTTACAGCCACCCTACTCGGTACATGGA
TTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGATGCTATATAAAT
GGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGATCAGCTGTTTATC
AACGCAGTCGCGAGAGCACACGAGGTGCGAGCGGTTTCCGATGCATTCGC
GGCTCGAATAGAGTATGGAAGGCTGCTTGTGTTGCCAGACCGCCATTTGT
TTGTCTCGGACTTATACAGTTAGCGCCCGCAATTAAGAAATATTTTCAAA
AGAAATTCAGGCTCACTTTTCCACGAAATATAAGAAAAAAGGGTTAAGAA
ATACAGCTCAATCTGGGTTACACGATAAGAAATGTCTCAATAAGAAACAG
CGACGACCGCTGCCCTACTACGTTACAAACGAGGGGTTGCAGGGGAGATG
AGTGTGTCGAACAAGAAACACCCCACCCACAGATCCTCCTATCTCTCGCT
CTTTACCCCCTCTCCCACTACCCCCGCCTCCCTAGTGCATTATTGGTTGT
ACGACGAGGGGGTTGTGTGTGTTTTTTTTGCGGCGCCCCCTCCGGCCCTC
TCTCTGGCGCTCCGGGTCTGGCACAGCACACCAAACAGGCTGCGAACCAC
GACATGCTGTCTGCTGTACGGTTTTGACGGTGCTCTCCGCCAGCTCTCGT
GAGCAGAGAAAATAAGAAATTGCCGATTGATTCAGCAGGATTTGGCGACG
CGAAAATAAGAAACTTGACATAAGAAATTGAACGACATACGCTGAGTTTA
TAGCCCACAAAAAGAATTCGAGGCTGGACCTGAAATAAGCGTTTCTTAAT
TGCGGGCGCTAACTGTAGACAAGGCTTGCCATCTTACTCATGCGCCCGTC
GGGACCGAACCCCGCGTTCGTGATATACGTCGTGTCCTCTGCATGCCTTG
CTGCAGCTCGATGGCAACTAGCGTGTTGCGCTCGATGGCAACTAGCGTGT
TGACAGTACCACCTCTACATCTTCGTCTGTCTGCCTGCCTGTCTTGTCTG
TGTACGGGCAATGTCCGTCAACATTGTTTTTTACAGCAGTGTGTCTTCTC
TTTGTGTTCTGGCTACTTCAAGGCACCTTTATTGTTAGTACCAGGTAGAC
AAATTTTCACGTGTCCTTATTTTTTGTCAAACCTCGATGGTGAAGGTTAA
CATTCGGATCCTGGTACCGGAGAAGAACAACACTCTACGTGACGAGCAAG
GGAACTACGCAGGCCAGGGCACCGCTCGACGGACGTACTACATGCTTCAC
AGCGGCGGCAACCACTTCGAGGCCCTCAAGGCGCTCGGCGAGGTCGAGCC
CATCGACGGCTGGACGGTTCAAGAGGTGTGGAAATGAGGATTGGCGGTGG
CGTTCGCGATGGCCGTGCCCCACGTTGATGGTTTAGAGCTGTTCCACAGT
TGGTTTTTTGTGATGGGCGTTGTTTGCATGTTGCTACACCACCCTATCAC
GAGCTGTGCTGACGCTTCGGTATTGTCGTCGGTTTTTCATACGTACACAT
TGACCTGAAAACGAAGAATCCTCGCCATACGGAGGCGCAAGGGTCAGCGC
TCCCACAACGAGGTATTGGCGTCACACCCCAACCGTAGTCTTAATGGAAT
TCATTGTTTTTCTTGCGGCGTTGGGTGTTTCGGAGAAGGAAAGCAACGAG
GGCAGGAGCCCCGTTCCTCGGAGTTTGTCCCCCGTTTGCAAGTGGTTATT
TACTTTGACTAGCCCTTTATCCCGAAGTTCCATCGGAAATGTCGGGATAT
CTGTTGCCCACCCTCGACTTCGCGTTGCTCACGGATGGCTTCGATTTCTG
TATACATTGTGTTCGCCCTCCCTGGGTCGTCCTGCACAAAGGTGATGCTC
GAGGAGGATAGGTCATCTTCGAGCGAGGGAGACCAATAGCACAATCGGAA
GGCGCCGGGCACTGCTGCTGCAGGAACAAACGATAATTTACTGTATACAC
AAGAGTTGGGATGGGGGAAAGCCTACAGGGCAGGGCCTTTTTGGTGGCAT
TATCGACAAGAAGACATGGTGAAGCTCTCTCGTCTCCTGGAAGTGTCGAG
ATTGCGAGGTGCAGACGGGGGGTGGCACGGCTAGAGAGGGGGAACGACGA
CGGCGCGTATGGAGGCGAAATAGCGAAGGTGGTCAACTGGATGGCTGTTT
TTCAGACAGCCGGCGGCGTTAGCTTTCGGATCCATGTCGGGTCTCTCCTC
GTGCAACGAGAGGGGGTCGGGAGCTTGTTCCACTGAGCAGGTTGGCAAAA
TTACGGTGGGGTCGGGGAGAAGTATAGTGGTGTTGTGGTGATGTACAGAG
GACTTGACATGAGTAGGGCTGGCGCGCATGAAAGCCGTGCTTGTGCTAGT
TAGTAGCAGTCGATATCGGCGGTGGCATAGATGTGTAGTCGGGTGACAAC
CCTTTGTGCGTTCTGTCTGTGGGGTGGAATAGAAAAGGATAGAGGAGTGA
TCGTGGGCAATACGCACCTAATCAACCCCTCGGTGCAAGAGCGTTCGCCT
TACGAGAAATATTTGGAAAATAAACGGAATACCAGGTGCTTTCAGGCTGC
ATCTGCCGAGCTTCGTGTGCATTTCCTCGCAGTAAGAGGGCAACACGAAG
ACGAGGACGGATAATTGAAGGTCATTTGGCAGCGCCCGACATGACGATCA
AGGTTGTGAATGCGTGTCTCTCGTGCGTGAAACGAGCTCGAGATGGGCAA
GCTTGGTGTCGTGTGTATGATGCGTTTTGAGTGAAATAGCAAGGATGTCG
GAAAACAAGCGACTGCTGATGCAGTGTGCAAGCAACGGAAATTCTTTGTG
TCATGTCTCAAGACGGGCCGGTGATCGAAAAGTTGTTCTACATACGCTAG
CCTTGTTCGCCACTTACAACTCAGCTTTAGGTACGTGTGCTAGTTCCGGG
GGGTAGTGCTAAGCTTATCCTAGTGTTGAATAAAGCACGCTCATGTCAAA
CGGTGGCACTGGCTTATGGCTCTCTGAATTTGTGCGTTTACATTCAAGTG
GGGTGCTTGAACATTATGCCATGTAGTGCTGAGCTTATCATAGTGTTGAA
AGCACGCTCATGCCACAGGGTGGCACCGGATGGCTTTCTGTATGAATATG
TATATCCTGTTTACATTCAAGTGTCCGTGCTTGAAATTTTGCCGTGTAAT
GCTGAGCTTATCCTAGTGTTGAAAGCACGCTCATGCCACAGGGTGGCGCT
GGCTTATGGCTCTCTGTATATGTGTTTCCTGTTTACGTTCAAGTGTCAGT
TCTGAACACTATGCCATGTATATTGTCGTCATGCACAGCCAACAAGGCCA
TGTCCTAGGGTCATATATACGGGTTTTTGACATTCCAGGGCACTTTTCGG
AGTCCGATTTTGGTGAACCGGTTCCACGCCTGGCAATATGTCTCGCTACC
ACGTGGTGTGTCGTGGTGGGCTGTGCTCGTTGTACGCGTGGAACAGGGGA
CGTACC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1347:12174..17579- >mRNA_E-fasciculatus_F_contig1347.2597.1 ID=mRNA_E-fasciculatus_F_contig1347.2597.1|Name=mRNA_E-fasciculatus_F_contig1347.2597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1347:12174..17579- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGCCTGATGTGGGGAACTTAATCCTCTATCCGATGCCTGATGTGGGGAA CTTAATCCTCTATCCGAGGGAGCTATTCCAGGCGATTCCCAATGGCGGGA AGGGGGACTGCGGCCCGGCTGCTCTATGGCACTTGATTTACGGCGGGCGC CCAACCAGCCGCGACCTAAAAGAGATGCGGAATCAGGCGGTGGACCAGAG GGAGCTATTCCAGGCGATTCCCAATGGCGGGAAGGGGGACTGCGGCCCGG CTGCTCTATGGCACTTGATTTACGGCGGGCGCCCAACCAGCCGCGACCTA AAAGAGATGCGGAATCAGGCGGTGGACCAGGTTTACAGCCACCCTACTCG GTACATGGATTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGATGC TATATAAATGGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGATCAG CTGTTTATCAACGCAGTCGCGAGAGCACACGAGGTTTACAGCCACCCTAC TCGGTACATGGATTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGA TGCTATATAAATGGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGAT CAGCTGTTTATCAACGCAGTCGCGAGAGCACACGAGGTTAACATTCGGAT CCTGGTACCGGAGAAGAACAACACTCTACGTGACGAGCAAGGGAACTACG CAGGCCAGGGCACCGCTCGACGGACGTACTACATGCTTCACAGCGGCGGC AACCACTTCGAGGCCCTCAAGGCGCTCGGCGAGGTCGAGCCCATCGACGG CTGGACGGTTCAAGAGGTTAACATTCGGATCCTGGTACCGGAGAAGAACA ACACTCTACGTGACGAGCAAGGGAACTACGCAGGCCAGGGCACCGCTCGA CGGACGTACTACATGCTTCACAGCGGCGGCAACCACTTCGAGGCCCTCAA GGCGCTCGGCGAGGTCGAGCCCATCGACGGCTGGACGGTTCAAGAGGTGA TGCTCGAGGAGGATAGGTCATCTTCGAGCGAGGGAGACCAATAGGTGATG CTCGAGGAGGATAGGTCATCTTCGAGCGAGGGAGACCAATAG back to top
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