mRNA_E-fasciculatus_F_contig13465.2594.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13465.2594.1
Unique NamemRNA_E-fasciculatus_F_contig13465.2594.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13465.2594.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 3.950e-123
Identity = 252/311 (81.03%), Postives = 261/311 (83.92%), Query Frame = 2 
Query:   32 MRPSGGVGGVARPGRGDDVDLEALQDAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDAPRSARGGADTADAPXXXXXXXXXXXXX-----ISSGTQPTSDKIGRETPRSLSGMPPDEREKGPLASASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGGS--GAIGRRGDKQRLGLAKEGKSGTAAVGRGIMGGFPAVRHRSEMGLIKLGAGAAXXXXXXXXXXXXXXXK---GNAASKRGGHGRTXXXXXXXGGHIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 934
            MRP  GV GVARPGRGDDVDLEALQDAFLRSAERPSAKV+RAKPPTIKAGSSLGVRKEDD PRS RGGADTA+AP     XXXXXX       IS GTQPT D   RE PRSL G+PP+EREKGPL SASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGG    GAIGRRGDKQR GLAK  K  TA   RGI+GGFPAVRHRSEMGL+KLG GAA   XXXXXXXXXXXX    GNAA++RGG    XXXXXXX G+IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG
Sbjct:    1 MRPGDGVRGVARPGRGDDVDLEALQDAFLRSAERPSAKVSRAKPPTIKAGSSLGVRKEDDDPRSGRGGADTANAPRSTGGXXXXXXAVAAATAISPGTQPTRDNNNREPPRSL-GVPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAERGIIGGFPAVRHRSEMGLVKLGVGAAAASXXXXXXXXXXXXXXXXGNAATERGGXXXXXXXXXXXVGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 310
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BLAST of mRNA_E-fasciculatus_F_contig13465.2594.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 2.150e-91
Identity = 208/307 (67.75%), Postives = 217/307 (70.68%), Query Frame = 2 
Query:  107 DAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDAPRSARGGADTADAPXXXXXXXXXXXXX----ISSGTQPTSDKIGRETPRSLSGMPPDEREKGPLASASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGGS--GAIGRRGDKQRLGLAKEGKSGTAAVGRGIMGGFPAVRHRSEMGLIKLGAGAAXXXXXXXXXXXXXXXKGNAASKRGGHGRTXXXXXXX--------------GGHIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG--GGGKAASGT 961
            DA + SA R + K    +PPT+KAGSSLGVRKEDD PRS RGGAD A+AP                 ISSG QPT     RE P SL GM P+E EK PL SASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGG    G I  RGDKQRLGLAK  K G AA G GI+GGFPA RHRSEMGL+KLGAGAAXXXXXXXXXXXXXXX              XXXXXXX               G+IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG  GGGK A  T
Sbjct:   24 DATILSASRRAHK----QPPTVKAGSSLGVRKEDDDPRSGRGGADHANAPPSNGGDAAAVAVAAAPAISSGAQPTCGSNDREPPHSLGGMAPEESEKSPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGVIVTRGDKQRLGLAKGAKHGMAAAGSGIIGGFPAARHRSEMGLVKLGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRGRAGGGKTAGCT 326
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13465.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHI7_ECTSI3.950e-12381.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHK5_9PHAE2.150e-9167.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13465contigE-fasciculatus_F_contig13465:1618..3473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.4
Seed ortholog evalue1.5e-108
Seed eggNOG ortholog2880.D8LHI7
Preferred nameRPAP1
KEGG koko:K19496,ko:K20826
KEGG TC1.A.17.1.1,1.A.17.1.22
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030154,GO:0030880,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048869,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription by RNA polymerase II
EggNOG OGsKOG4732@1,KOG4732@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size964
Cds size933
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13465.2594.1prot_E-fasciculatus_F_contig13465.2594.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13465 1649..3473 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.33966-UTR-E-fasciculatus_F_contig13465:1617..16481622927846.33966-UTR-E-fasciculatus_F_contig13465:1617..1648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13465 1618..1648 +
1695995720.496567-UTR-E-fasciculatus_F_contig13465:1617..16481695995720.496567-UTR-E-fasciculatus_F_contig13465:1617..1648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13465 1618..1648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.360454-CDS-E-fasciculatus_F_contig13465:1648..17771622927846.360454-CDS-E-fasciculatus_F_contig13465:1648..1777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13465 1649..1777 +
1695995720.509084-CDS-E-fasciculatus_F_contig13465:1648..17771695995720.509084-CDS-E-fasciculatus_F_contig13465:1648..1777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13465 1649..1777 +
1622927846.3779843-CDS-E-fasciculatus_F_contig13465:2669..34731622927846.3779843-CDS-E-fasciculatus_F_contig13465:2669..3473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13465 2670..3473 +
1695995720.519193-CDS-E-fasciculatus_F_contig13465:2669..34731695995720.519193-CDS-E-fasciculatus_F_contig13465:2669..3473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13465 2670..3473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13465.2594.1

>prot_E-fasciculatus_F_contig13465.2594.1 ID=prot_E-fasciculatus_F_contig13465.2594.1|Name=mRNA_E-fasciculatus_F_contig13465.2594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=311bp
MRPSGGVGGVARPGRGDDVDLEALQDAFLRSAERPSAKVTRAKPPTIKAG
SSLGVRKEDDAPRSARGGADTADAPPSNGGGTAAAAAAISSGTQPTSDKI
GRETPRSLSGMPPDEREKGPLASASSPTGGMILNAPGVVSKSVREREVKP
PAPMRIGGFAGGGSGAIGRRGDKQRLGLAKEGKSGTAAVGRGIMGGFPAV
RHRSEMGLIKLGAGAASASSGAPAAAAVAVAKGNAASKRGGHGRTGGGGG
KGGGHIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR
GGGGKAASGTP
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mRNA from alignment at E-fasciculatus_F_contig13465:1618..3473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13465.2594.1 ID=mRNA_E-fasciculatus_F_contig13465.2594.1|Name=mRNA_E-fasciculatus_F_contig13465.2594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1856bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13465:1618..3473+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCACACAGAGCAGAGCAGCGGGAATAAAAGATGCGCCCAAGCGGCGGCG
TTGGTGGCGTGGCAAGGCCCGGTCGTGGAGATGATGTCGATCTGGAGGCT
CTCCAGGATGCGTTTCTGAGGAGCGCAGAGAGGCCATCGGCAAAGGTTAC
TCGCGCAAAGGTGACTTTTCCTTTTTTTTTGAATTTGTTCACCTGCGGAG
AGCTGTATCTCCCTCTTTCGCGGTCATGAGACATGAGACCGCCCAGTGCC
GTTGACAGCAGTGTTGCTGCTACCGCTTTGTGTCACGGTTTGTAGGATCA
TGACCTTTGCCATTGAACCTCGCTACCACCGTAAGCGACCATTGGTTGCT
GACTTGACTTGCGTCTGAGGCAAGAGTATGCGGATGCTGCGGCTATTGAT
TGGTGTCCCAGTCCACGGGACTGTCAGTTTTTTTTCCGATGGCCCGAGCA
GCAGAGTGAACAGTGAGCAGCTACACACCAGTGTACAGCAGTCGTGAGCA
GCGAACAGCAATGAGGTGTGAGATAGGACGGAGGGGCAAAAAAAGGAGAG
ACGGATGCACNNNNNNNNNNGGGGGGGGGGGGGGGGGGGAGCATTCGAAG
TTGGCAGAACCGCTGAGGCTAGCAGCTGCTGTACACTTGACGTCTGTGCG
TCTGTGACTCCACCGCTCGCATATGCGTACCTACAGCGGGCTGTTCCCTA
CACTCCCGCTACCGCGAGTCGATGGGGAAAAGCTTCAGCCAGCTGTTGCT
GGTCTGCCCGCGCCGACTTCTGCCAAACCGATAGCTTTCCACACGTATGG
TGTCACGTGACCGCTTACGGCAGTACGTTTTCCTGCTTAATCCCACGTTC
CAGCTGTATGATGTGTCTCTTGCGTTGCCTGATTCGCTGGCAATGCTGAA
TGACACCAGGTATGCATGAGTACAGTAGTTGCAGTACGACCCTCCCCTTC
ATCTTCGAATAAGAAATGCCGGAGATCACACCCTGTGATGTAAACGACAA
GGCTCCTGCTGACGCGATGATTCTCTCTGCATCACGACGTGCGCACGAGC
AGCCGCCGACCATAAAAGCCGGATCCTCTCTAGGGGTAAGGAAGGAGGAC
GATGCGCCCCGCAGCGCCAGGGGCGGCGCTGATACCGCGGACGCGCCGCC
CTCAAACGGCGGTGGCACGGCGGCGGCAGCGGCGGCGATTTCGTCGGGAA
CCCAGCCAACCAGCGACAAGATCGGCCGCGAAACCCCTCGTAGTCTGAGC
GGCATGCCCCCGGACGAGCGCGAGAAGGGTCCGTTGGCGTCGGCCTCCTC
GCCTACGGGGGGGATGATTCTGAACGCCCCCGGGGTGGTGTCGAAGAGCG
TTCGCGAGAGGGAGGTCAAGCCGCCGGCGCCGATGAGGATAGGCGGCTTC
GCTGGCGGCGGTAGCGGGGCGATCGGGAGACGAGGAGACAAGCAGCGTCT
CGGACTCGCGAAGGAAGGGAAGAGCGGAACGGCGGCGGTGGGGCGGGGTA
TCATGGGAGGGTTCCCGGCGGTGCGCCACCGGTCAGAGATGGGCCTTATC
AAGCTCGGGGCGGGAGCCGCATCCGCTTCTTCTGGTGCTCCCGCCGCCGC
CGCCGTCGCTGTTGCAAAGGGAAACGCAGCATCCAAAAGAGGCGGCCATG
GCAGGACCGGCGGAGGCGGCGGCAAGGGCGGCGGCCATATTCCTGGCGAC
ATCCACGAAGAGAACCTGTCGCGGATCTCAGCCATGTCCCCGGACGAGAT
CGCCGACGCGCAGCAGGAGATTCGCGCGGCCTTGCCGCCCGGCGCGCTCG
AGATGCTCCTGCGGCGGGGACGGGGAGGGGGCGGGAAGGCCGCCAGTGGC
ACTCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13465:1618..3473+

>mRNA_E-fasciculatus_F_contig13465.2594.1 ID=mRNA_E-fasciculatus_F_contig13465.2594.1|Name=mRNA_E-fasciculatus_F_contig13465.2594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1866bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13465:1618..3473+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCCCAAGCGGCGGCGTTGGTGGCGTGGCAAGGCCCGGTCGTGGAGA
TGATGTCGATCTGGAGGCTCTCCAGGATGCGTTTCTGAGGAGCGCAGAGA
GGCCATCGGCAAAGGTTACTCGCGCAAAGATGCGCCCAAGCGGCGGCGTT
GGTGGCGTGGCAAGGCCCGGTCGTGGAGATGATGTCGATCTGGAGGCTCT
CCAGGATGCGTTTCTGAGGAGCGCAGAGAGGCCATCGGCAAAGGTTACTC
GCGCAAAGCCGCCGACCATAAAAGCCGGATCCTCTCTAGGGGTAAGGAAG
GAGGACGATGCGCCCCGCAGCGCCAGGGGCGGCGCTGATACCGCGGACGC
GCCGCCCTCAAACGGCGGTGGCACGGCGGCGGCAGCGGCGGCGATTTCGT
CGGGAACCCAGCCAACCAGCGACAAGATCGGCCGCGAAACCCCTCGTAGT
CTGAGCGGCATGCCCCCGGACGAGCGCGAGAAGGGTCCGTTGGCGTCGGC
CTCCTCGCCTACGGGGGGGATGATTCTGAACGCCCCCGGGGTGGTGTCGA
AGAGCGTTCGCGAGAGGGAGGTCAAGCCGCCGGCGCCGATGAGGATAGGC
GGCTTCGCTGGCGGCGGTAGCGGGGCGATCGGGAGACGAGGAGACAAGCA
GCGTCTCGGACTCGCGAAGGAAGGGAAGAGCGGAACGGCGGCGGTGGGGC
GGGGTATCATGGGAGGGTTCCCGGCGGTGCGCCACCGGTCAGAGATGGGC
CTTATCAAGCTCGGGGCGGGAGCCGCATCCGCTTCTTCTGGTGCTCCCGC
CGCCGCCGCCGTCGCTGTTGCAAAGGGAAACGCAGCATCCAAAAGAGGCG
GCCATGGCAGGACCGGCGGAGGCGGCGGCAAGGGCGGCGGCCATATTCCT
GGCGACATCCACGAAGAGAACCTGTCGCGGATCTCAGCCATGTCCCCGGA
CGAGATCGCCGACGCGCAGCAGGAGATTCGCGCGGCCTTGCCGCCCGGCG
CGCTCGAGATGCTCCTGCGGCGGGGACGGGGAGGGGGCGGGAAGGCCGCC
AGTGGCACTCCGCCGCCGACCATAAAAGCCGGATCCTCTCTAGGGGTAAG
GAAGGAGGACGATGCGCCCCGCAGCGCCAGGGGCGGCGCTGATACCGCGG
ACGCGCCGCCCTCAAACGGCGGTGGCACGGCGGCGGCAGCGGCGGCGATT
TCGTCGGGAACCCAGCCAACCAGCGACAAGATCGGCCGCGAAACCCCTCG
TAGTCTGAGCGGCATGCCCCCGGACGAGCGCGAGAAGGGTCCGTTGGCGT
CGGCCTCCTCGCCTACGGGGGGGATGATTCTGAACGCCCCCGGGGTGGTG
TCGAAGAGCGTTCGCGAGAGGGAGGTCAAGCCGCCGGCGCCGATGAGGAT
AGGCGGCTTCGCTGGCGGCGGTAGCGGGGCGATCGGGAGACGAGGAGACA
AGCAGCGTCTCGGACTCGCGAAGGAAGGGAAGAGCGGAACGGCGGCGGTG
GGGCGGGGTATCATGGGAGGGTTCCCGGCGGTGCGCCACCGGTCAGAGAT
GGGCCTTATCAAGCTCGGGGCGGGAGCCGCATCCGCTTCTTCTGGTGCTC
CCGCCGCCGCCGCCGTCGCTGTTGCAAAGGGAAACGCAGCATCCAAAAGA
GGCGGCCATGGCAGGACCGGCGGAGGCGGCGGCAAGGGCGGCGGCCATAT
TCCTGGCGACATCCACGAAGAGAACCTGTCGCGGATCTCAGCCATGTCCC
CGGACGAGATCGCCGACGCGCAGCAGGAGATTCGCGCGGCCTTGCCGCCC
GGCGCGCTCGAGATGCTCCTGCGGCGGGGACGGGGAGGGGGCGGGAAGGC
CGCCAGTGGCACTCCG
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