prot_E-fasciculatus_F_contig13465.2594.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig13465.2594.1
Unique Nameprot_E-fasciculatus_F_contig13465.2594.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length311
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13465.2594.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 2.700e-123
Identity = 252/311 (81.03%), Postives = 261/311 (83.92%), Query Frame = 0 
Query:    1 MRPSGGVGGVARPGRGDDVDLEALQDAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDAPRSARGGADTADAPXXXXXXXXXXXXX-----ISSGTQPTSDKIGRETPRSLSGMPPDEREKGPLASASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGGS--GAIGRRGDKQRLGLAKEGKSGTAAVGRGIMGGFPAVRHRSEMGLIKLGAGAAXXXXXXXXXXXXXXXK---GNAASKRGGHGRTXXXXXXXGGHIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 301
            MRP  GV GVARPGRGDDVDLEALQDAFLRSAERPSAKV+RAKPPTIKAGSSLGVRKEDD PRS RGGADTA+AP     XXXXXX       IS GTQPT D   RE PRSL G+PP+EREKGPL SASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGG    GAIGRRGDKQR GLAK  K  TA   RGI+GGFPAVRHRSEMGL+KLG GAA   XXXXXXXXXXXX    GNAA++RGG    XXXXXXX G+IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG
Sbjct:    1 MRPGDGVRGVARPGRGDDVDLEALQDAFLRSAERPSAKVSRAKPPTIKAGSSLGVRKEDDDPRSGRGGADTANAPRSTGGXXXXXXAVAAATAISPGTQPTRDNNNREPPRSL-GVPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAERGIIGGFPAVRHRSEMGLVKLGVGAAAASXXXXXXXXXXXXXXXXGNAATERGGXXXXXXXXXXXVGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG 310
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BLAST of mRNA_E-fasciculatus_F_contig13465.2594.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.500e-91
Identity = 208/307 (67.75%), Postives = 217/307 (70.68%), Query Frame = 0 
Query:   26 DAFLRSAERPSAKVTRAKPPTIKAGSSLGVRKEDDAPRSARGGADTADAPXXXXXXXXXXXXX----ISSGTQPTSDKIGRETPRSLSGMPPDEREKGPLASASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGGS--GAIGRRGDKQRLGLAKEGKSGTAAVGRGIMGGFPAVRHRSEMGLIKLGAGAAXXXXXXXXXXXXXXXKGNAASKRGGHGRTXXXXXXX--------------GGHIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG--GGGKAASGT 310
            DA + SA R + K    +PPT+KAGSSLGVRKEDD PRS RGGAD A+AP                 ISSG QPT     RE P SL GM P+E EK PL SASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGG    G I  RGDKQRLGLAK  K G AA G GI+GGFPA RHRSEMGL+KLGAGAAXXXXXXXXXXXXXXX              XXXXXXX               G+IPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRG  GGGK A  T
Sbjct:   24 DATILSASRRAHK----QPPTVKAGSSLGVRKEDDDPRSGRGGADHANAPPSNGGDAAAVAVAAAPAISSGAQPTCGSNDREPPHSLGGMAPEESEKSPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGVIVTRGDKQRLGLAKGAKHGMAAAGSGIIGGFPAARHRSEMGLVKLGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRGRAGGGKTAGCT 326
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13465.2594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHI7_ECTSI2.700e-12381.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHK5_9PHAE1.500e-9167.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013930RNA polymerase II-associated protein 1, N-terminalPFAMPF08621RPAP1_Ncoord: 259..299
e-value: 2.8E-15
score: 55.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13465contigE-fasciculatus_F_contig13465:1649..3473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13465.2594.1mRNA_E-fasciculatus_F_contig13465.2594.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig13465 1618..3473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig13465.2594.1 ID=prot_E-fasciculatus_F_contig13465.2594.1|Name=mRNA_E-fasciculatus_F_contig13465.2594.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=311bp
MRPSGGVGGVARPGRGDDVDLEALQDAFLRSAERPSAKVTRAKPPTIKAG
SSLGVRKEDDAPRSARGGADTADAPPSNGGGTAAAAAAISSGTQPTSDKI
GRETPRSLSGMPPDEREKGPLASASSPTGGMILNAPGVVSKSVREREVKP
PAPMRIGGFAGGGSGAIGRRGDKQRLGLAKEGKSGTAAVGRGIMGGFPAV
RHRSEMGLIKLGAGAASASSGAPAAAAVAVAKGNAASKRGGHGRTGGGGG
KGGGHIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR
GGGGKAASGTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013930RNA_pol_II_AP1_N