mRNA_E-fasciculatus_F_contig13430.2575.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13430.2575.1
Unique NamemRNA_E-fasciculatus_F_contig13430.2575.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.050e-53
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
            RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA
Sbjct:  824 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 916          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A835YQ44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ44_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.080e-29
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLA------AHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
            RRFL  VL DM+VLERCTL  L         P+ +LFRQLLEM+RFYLGFEINDQTGRPL+ ++++  H +R+H LQ++VF+HY++ LP+ PF S+  A
Sbjct:  303 RRFLRAVLLDMKVLERCTLCPLGDGAEGVPRPEGKLFRQLLEMYRFYLGFEINDQTGRPLSGEEVVAMHQTRLHTLQRIVFKHYKEVLPELPFASASQA 401          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: T2MIY3_HYDVU (Intron-binding protein aquarius (Fragment) n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2MIY3_HYDVU)

HSP 1 Score: 97.4 bits (241), Expect = 1.330e-21
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDF 255
            RRF  V++++  V+ RC LS LA HPK +LF QL+EM +FY GFEIND TG PLTD++M EKH+  +  LQ+ VF++Y+    DF
Sbjct:   69 RRFFNVLIDNHHVVVRCRLSALAKHPKGKLFNQLVEMLKFYCGFEINDHTGSPLTDREMSEKHYESITSLQRAVFKNYKNDALDF 153          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A7M5XFH6_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XFH6_9CNID)

HSP 1 Score: 89.4 bits (220), Expect = 9.200e-19
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
            RRF  VV+++  V+  C LS LA HPK +LF QL++M +FY GFEIND TG  LTD DM E H+ ++  LQ+ VF++Y+     F  +S+VA+
Sbjct:  267 RRFFNVVIDNHHVVVTCQLSNLAKHPKGKLFNQLVDMLKFYTGFEINDHTGESLTDYDMTEAHYDKITSLQRAVFKNYKSDGSTFA-MSNVAS 358          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A162C8N0_9CRUS (Intron-binding protein aquarius n=7 Tax=Daphnia TaxID=6668 RepID=A0A162C8N0_9CRUS)

HSP 1 Score: 85.5 bits (210), Expect = 2.070e-17
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQ 240
            RRF  VV++D  ++ RC LS L    + +LF QLL+M +FY  FEINDQTG PLTD+DMM+ H+ R+  LQK  F  Y +
Sbjct:  275 RRFFNVVMDDCHLVTRCHLSSLNHRSEGKLFAQLLDMLKFYAHFEINDQTGDPLTDRDMMQLHYDRITALQKAAFVKYSE 354          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: UPI001FB8CC5A (RNA helicase aquarius n=4 Tax=Pieris TaxID=7115 RepID=UPI001FB8CC5A)

HSP 1 Score: 84.0 bits (206), Expect = 7.190e-17
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHY 234
            RRF   V++D  ++ RC L+KLA  P+ +LF QLL+M +FY  FEI+D+TG P+TDKDM  +H+SR+  LQK  F  +
Sbjct:  269 RRFFNTVMDDCHLVVRCQLAKLAERPEGQLFSQLLQMLKFYARFEISDETGDPMTDKDMALQHYSRITSLQKAAFSKF 346          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A6S7J3G9_PARCT (Intron-binding aquarius (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J3G9_PARCT)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-16
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHP-KARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
            RRF   VL+D  V+E C+LS LA  P K +LF QLL+M RFY GFEIND TG  LTD +M+E H++++  LQ+  F+++ + L +F  +S+VA+
Sbjct:   57 RRFFNTVLDDSHVVEHCSLSYLAKEPTKGKLFTQLLDMLRFYAGFEINDNTGSALTDHEMVEIHYNKITSLQRAAFKNFPE-LQNFA-LSNVAS 148          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A7R9BIT6_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BIT6_9CRUS)

HSP 1 Score: 82.4 bits (202), Expect = 2.500e-16
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHY 234
            RRF   VL+D +++ R ++S L   P+ +LFRQLL+M RFY  FEIND TG PLTD+DMM+ H++ +  LQ+ VF  Y
Sbjct:  280 RRFFNTVLDDSQIVIRSSMSSLVRKPEGKLFRQLLDMLRFYQRFEINDATGDPLTDRDMMKLHYASLVALQRAVFIKY 357          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: UPI001D099A6F (RNA helicase aquarius n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D099A6F)

HSP 1 Score: 81.6 bits (200), Expect = 4.660e-16
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDF 255
            RRF  +VL+D  ++ RC LS L   P+ RLF QLL+  +FY  FEIND+TG PLTD DM + H+ ++  LQKV F  + + L DF
Sbjct:  261 RRFFNIVLDDCHLVVRCQLSALIKKPEGRLFAQLLDTLKFYSKFEINDETGDPLTDHDMTQIHYDQITSLQKVAFTKFPELL-DF 344          
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: UPI0018D15966 (RNA helicase aquarius n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D15966)

HSP 1 Score: 80.9 bits (198), Expect = 8.680e-16
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVF 225
            RRF   VL+D  ++ RC LS LA  P+ +LF QLL+M +FY  FEI+D+TG P+TD+DM   H+SR+  LQK  F
Sbjct:  268 RRFFNTVLDDCHLVVRCQLSALARRPEGQLFTQLLQMLKFYARFEISDETGDPMTDRDMTLLHYSRITSLQKAAF 342          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI1.050e-53100.00Aquarius intron-binding protein similar to aquariu... [more]
A0A835YQ44_9STRA6.080e-2956.57Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
T2MIY3_HYDVU1.330e-2152.94Intron-binding protein aquarius (Fragment) n=3 Tax... [more]
A0A7M5XFH6_9CNID9.200e-1948.39Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A162C8N0_9CRUS2.070e-1751.25Intron-binding protein aquarius n=7 Tax=Daphnia Ta... [more]
UPI001FB8CC5A7.190e-1750.00RNA helicase aquarius n=4 Tax=Pieris TaxID=7115 Re... [more]
A0A6S7J3G9_PARCT1.310e-1648.94Intron-binding aquarius (Fragment) n=2 Tax=Paramur... [more]
A0A7R9BIT6_9CRUS2.500e-1651.28Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
UPI001D099A6F4.660e-1649.41RNA helicase aquarius n=1 Tax=Coccinella septempun... [more]
UPI0018D159668.680e-1652.00RNA helicase aquarius n=1 Tax=Plutella xylostella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13430contigE-fasciculatus_F_contig13430:2629..3340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue3.9e-40
Seed eggNOG ortholog2880.D7FMQ9
KEGG koko:K12874
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1806@1,KOG1806@2759
Ec32 ortholog descriptionAquarius intron-binding protein similar to aquarius
Ec32 orthologEc-23_001250.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13430.2575.1prot_E-fasciculatus_F_contig13430.2575.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13430 2659..3340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.2007747-UTR-E-fasciculatus_F_contig13430:2628..26581622927844.2007747-UTR-E-fasciculatus_F_contig13430:2628..2658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13430 2629..2658 +
1695995719.4833086-UTR-E-fasciculatus_F_contig13430:2628..26581695995719.4833086-UTR-E-fasciculatus_F_contig13430:2628..2658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13430 2629..2658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.2165403-CDS-E-fasciculatus_F_contig13430:2658..27541622927844.2165403-CDS-E-fasciculatus_F_contig13430:2658..2754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13430 2659..2754 +
1695995719.496921-CDS-E-fasciculatus_F_contig13430:2658..27541695995719.496921-CDS-E-fasciculatus_F_contig13430:2658..2754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13430 2659..2754 +
1622927844.2302005-CDS-E-fasciculatus_F_contig13430:3187..33401622927844.2302005-CDS-E-fasciculatus_F_contig13430:3187..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13430 3188..3340 +
1695995719.5067565-CDS-E-fasciculatus_F_contig13430:3187..33401695995719.5067565-CDS-E-fasciculatus_F_contig13430:3187..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13430 3188..3340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13430.2575.1

>prot_E-fasciculatus_F_contig13430.2575.1 ID=prot_E-fasciculatus_F_contig13430.2575.1|Name=mRNA_E-fasciculatus_F_contig13430.2575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
MRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMM
EKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA
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mRNA from alignment at E-fasciculatus_F_contig13430:2629..3340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13430.2575.1 ID=mRNA_E-fasciculatus_F_contig13430.2575.1|Name=mRNA_E-fasciculatus_F_contig13430.2575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=712bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13430:2629..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCGGTTCCTGTGCGTTGTCCTAGAGGACATGCGCGTGCTGGAGCGGTG CACGCTGTCGAAGCTCGCCGCCCACCCGAAGGCAAGGCTGTTCCGCCAGC TGCTGGAGATGTTCCGGTTCTACCTGGTGAGTTTGGTGGTTTGGTTTGGT TCTGTTCCACTGTTCCATATTTCATTGGATTTCAGCCCAAATGGGCACTA ACCATCCATCCAACATGGCTCAAGTACACCGCCGTTGAATGGAACCAACA GATGGCCTTGCCTGGGATGGCGACGACCCATGTGCTTCATACGCTCTCGT GTACAACACACACTTGCAGGCTGGTCAACTACAATGAACTAAACGAGAGA CCCCTGCGCGATAGCTAGAGAAGGCCAAGCAACGGGAGAAAAAGGTGTTC GCTCGATGTGAAAATCTATCTACTATTCTGCGTCCCCCCGCGGTTTGATT GTGGCTGTCTGACTGTCTCTCTGTTCTGTCTCGCGCTACTTCTTTGCCTG TTTGTGCTGTCTGCGCTGTCTTTATACGGCGTGTGTGCTTTCGGCGTGCG ATAACCCAGGGCTTTGAGATCAACGACCAGACGGGACGGCCCCTGACGGA CAAGGACATGATGGAGAAGCACCACTCGCGCGTGCACGTGCTGCAGAAGG TGGTGTTCGAGCACTACAGGCAGGCGCTGCCGGACTTCCCCTTCGTGAGC TCCGTCGCCGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13430:2629..3340+

>mRNA_E-fasciculatus_F_contig13430.2575.1 ID=mRNA_E-fasciculatus_F_contig13430.2575.1|Name=mRNA_E-fasciculatus_F_contig13430.2575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13430:2629..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCGTGCTGGAGCGGTGCACGCTGTCGAAGCTCGCCGCCCACCCGAA
GGCAAGGCTGTTCCGCCAGCTGCTGGAGATGTTCCGGTTCTACCTGATGC
GCGTGCTGGAGCGGTGCACGCTGTCGAAGCTCGCCGCCCACCCGAAGGCA
AGGCTGTTCCGCCAGCTGCTGGAGATGTTCCGGTTCTACCTGGGCTTTGA
GATCAACGACCAGACGGGACGGCCCCTGACGGACAAGGACATGATGGAGA
AGCACCACTCGCGCGTGCACGTGCTGCAGAAGGTGGTGTTCGAGCACTAC
AGGCAGGCGCTGCCGGACTTCCCCTTCGTGAGCTCCGTCGCCGCCGGCTT
TGAGATCAACGACCAGACGGGACGGCCCCTGACGGACAAGGACATGATGG
AGAAGCACCACTCGCGCGTGCACGTGCTGCAGAAGGTGGTGTTCGAGCAC
TACAGGCAGGCGCTGCCGGACTTCCCCTTCGTGAGCTCCGTCGCCGCC
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