mRNA_E-fasciculatus_F_contig13430.2575.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.050e-53 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA
Sbjct: 824 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 916
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A835YQ44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ44_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.080e-29 Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLA------AHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
RRFL VL DM+VLERCTL L P+ +LFRQLLEM+RFYLGFEINDQTGRPL+ ++++ H +R+H LQ++VF+HY++ LP+ PF S+ A
Sbjct: 303 RRFLRAVLLDMKVLERCTLCPLGDGAEGVPRPEGKLFRQLLEMYRFYLGFEINDQTGRPLSGEEVVAMHQTRLHTLQRIVFKHYKEVLPELPFASASQA 401
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: T2MIY3_HYDVU (Intron-binding protein aquarius (Fragment) n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2MIY3_HYDVU) HSP 1 Score: 97.4 bits (241), Expect = 1.330e-21 Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDF 255
RRF V++++ V+ RC LS LA HPK +LF QL+EM +FY GFEIND TG PLTD++M EKH+ + LQ+ VF++Y+ DF
Sbjct: 69 RRFFNVLIDNHHVVVRCRLSALAKHPKGKLFNQLVEMLKFYCGFEINDHTGSPLTDREMSEKHYESITSLQRAVFKNYKNDALDF 153
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A7M5XFH6_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XFH6_9CNID) HSP 1 Score: 89.4 bits (220), Expect = 9.200e-19 Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
RRF VV+++ V+ C LS LA HPK +LF QL++M +FY GFEIND TG LTD DM E H+ ++ LQ+ VF++Y+ F +S+VA+
Sbjct: 267 RRFFNVVIDNHHVVVTCQLSNLAKHPKGKLFNQLVDMLKFYTGFEINDHTGESLTDYDMTEAHYDKITSLQRAVFKNYKSDGSTFA-MSNVAS 358
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A162C8N0_9CRUS (Intron-binding protein aquarius n=7 Tax=Daphnia TaxID=6668 RepID=A0A162C8N0_9CRUS) HSP 1 Score: 85.5 bits (210), Expect = 2.070e-17 Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQ 240
RRF VV++D ++ RC LS L + +LF QLL+M +FY FEINDQTG PLTD+DMM+ H+ R+ LQK F Y +
Sbjct: 275 RRFFNVVMDDCHLVTRCHLSSLNHRSEGKLFAQLLDMLKFYAHFEINDQTGDPLTDRDMMQLHYDRITALQKAAFVKYSE 354
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: UPI001FB8CC5A (RNA helicase aquarius n=4 Tax=Pieris TaxID=7115 RepID=UPI001FB8CC5A) HSP 1 Score: 84.0 bits (206), Expect = 7.190e-17 Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHY 234
RRF V++D ++ RC L+KLA P+ +LF QLL+M +FY FEI+D+TG P+TDKDM +H+SR+ LQK F +
Sbjct: 269 RRFFNTVMDDCHLVVRCQLAKLAERPEGQLFSQLLQMLKFYARFEISDETGDPMTDKDMALQHYSRITSLQKAAFSKF 346
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A6S7J3G9_PARCT (Intron-binding aquarius (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J3G9_PARCT) HSP 1 Score: 83.2 bits (204), Expect = 1.310e-16 Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHP-KARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDFPFVSSVAA 279
RRF VL+D V+E C+LS LA P K +LF QLL+M RFY GFEIND TG LTD +M+E H++++ LQ+ F+++ + L +F +S+VA+
Sbjct: 57 RRFFNTVLDDSHVVEHCSLSYLAKEPTKGKLFTQLLDMLRFYAGFEINDNTGSALTDHEMVEIHYNKITSLQRAAFKNFPE-LQNFA-LSNVAS 148
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: A0A7R9BIT6_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BIT6_9CRUS) HSP 1 Score: 82.4 bits (202), Expect = 2.500e-16 Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHY 234
RRF VL+D +++ R ++S L P+ +LFRQLL+M RFY FEIND TG PLTD+DMM+ H++ + LQ+ VF Y
Sbjct: 280 RRFFNTVLDDSQIVIRSSMSSLVRKPEGKLFRQLLDMLRFYQRFEINDATGDPLTDRDMMKLHYASLVALQRAVFIKY 357
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: UPI001D099A6F (RNA helicase aquarius n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D099A6F) HSP 1 Score: 81.6 bits (200), Expect = 4.660e-16 Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVFEHYRQALPDF 255
RRF +VL+D ++ RC LS L P+ RLF QLL+ +FY FEIND+TG PLTD DM + H+ ++ LQKV F + + L DF
Sbjct: 261 RRFFNIVLDDCHLVVRCQLSALIKKPEGRLFAQLLDTLKFYSKFEINDETGDPLTDHDMTQIHYDQITSLQKVAFTKFPELL-DF 344
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Match: UPI0018D15966 (RNA helicase aquarius n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D15966) HSP 1 Score: 80.9 bits (198), Expect = 8.680e-16 Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 1 RRFLCVVLEDMRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMEKHHSRVHVLQKVVF 225
RRF VL+D ++ RC LS LA P+ +LF QLL+M +FY FEI+D+TG P+TD+DM H+SR+ LQK F
Sbjct: 268 RRFFNTVLDDCHLVVRCQLSALARRPEGQLFTQLLQMLKFYARFEISDETGDPMTDRDMTLLHYSRITSLQKAAF 342 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13430.2575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13430.2575.1 >prot_E-fasciculatus_F_contig13430.2575.1 ID=prot_E-fasciculatus_F_contig13430.2575.1|Name=mRNA_E-fasciculatus_F_contig13430.2575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp MRVLERCTLSKLAAHPKARLFRQLLEMFRFYLGFEINDQTGRPLTDKDMMback to top mRNA from alignment at E-fasciculatus_F_contig13430:2629..3340+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13430.2575.1 ID=mRNA_E-fasciculatus_F_contig13430.2575.1|Name=mRNA_E-fasciculatus_F_contig13430.2575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=712bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13430:2629..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13430:2629..3340+ >mRNA_E-fasciculatus_F_contig13430.2575.1 ID=mRNA_E-fasciculatus_F_contig13430.2575.1|Name=mRNA_E-fasciculatus_F_contig13430.2575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13430:2629..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |