mRNA_E-fasciculatus_F_contig13393.2541.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13393.2541.1
Unique NamemRNA_E-fasciculatus_F_contig13393.2541.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: D8LC27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC27_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.720e-59
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNEKFHRSGRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEEKKKERAMDLQRLK 332
            QPLAKNGMAATLALLRPSGVLNEKFHRSGRAKDARKHHGEA+ETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLK VEEEKKKERAMDLQRLK
Sbjct:  789 QPLAKNGMAATLALLRPSGVLNEKFHRSGRAKDARKHHGEAEETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKLVEEEKKKERAMDLQRLK 898          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: A0A836C9M6_9STRA (SART-1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.810e-24
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNEKFHRSGRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEEKKKERAMDL 320
            QPL ++ MAA L+LL+ SG L  K   +GRAKD R+  GEA +         KLEYRDE+GR++TR EAFR L Y+FHGYG GKKKQEKRLK ++E++ +ERA D+
Sbjct:  671 QPLVRSSMAAALSLLQQSGDLKHKTELAGRAKDKREFAGEAPDDDGSGAGAVKLEYRDEFGRQLTRAEAFRQLNYQFHGYGPGKKKQEKRLKALQEQRMRERAADV 776          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: A0A6A5ABK5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABK5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.050e-19
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNE--KFHRSGRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEE 293
            +PL + GMAATLALLR  G L +  +  ++GRA D R+ H E +   +D   G KL+YRDE+GR +T+KEAFR + Y+FHG+  GKKKQEKRLK ++EE
Sbjct:  166 EPLVQTGMAATLALLRNRGDLRDAIQIRQAGRANDHRERHVEEELQIKD---GVKLDYRDEFGRLLTKKEAFRRISYRFHGHTPGKKKQEKRLKQIKEE 261          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: A0A7S2XZB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZB3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.160e-19
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 3
Query:    9 LAKNGMAATLALLRPSGVLN--EKFHRSGRAKDARKHHGEA---DETREDRESGAK---LEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEE 293
            L + GMAATL++L+ +G L   E   RSGRA+DAR    E    D+ ++D  +G K   +EYRDE+GRE+TRKEAFR L Y+FHG+G GKKK++KRLK + EE
Sbjct:    1 LVRQGMAATLSILKNTGDLKMREVEKRSGRARDARNFPWEKVLDDQEKKDIAAGKKEIKIEYRDEFGRELTRKEAFRQLSYRFHGHGPGKKKEDKRLKILAEE 103          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: K3X7K3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7K3_GLOUD)

HSP 1 Score: 87.4 bits (215), Expect = 3.940e-19
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNEKF--HRSGRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEE 293
            QPL  +GMAATLALLR +G L E     ++GRA DAR  + + +   +D   G KL+YRDE+GR +T+KEAFR L YKFHG+  GKKK+EKRLK ++EE
Sbjct:   67 QPLVGSGMAATLALLRKTGDLRETRVERQAGRANDARDRNVDEELRIKD---GVKLDYRDEFGRLLTKKEAFRMLSYKFHGHEPGKKKKEKRLKQLKEE 162          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: A0A1V9YTX2_9STRA (U4/U6.U5 tri-snRNP-associated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTX2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.090e-19
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNEKFHRS--GRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEE 293
            +PL ++GMAATLALLR  G L E+   S  GRA D R  +   +   +D   G KL+YRDE+GR +T+KEAFR L Y+FHG+  GKKKQEKRLK ++EE
Sbjct:   14 EPLVQSGMAATLALLRNRGDLREELQLSQAGRANDQRDRNINDELQIKD---GVKLDYRDEFGRLLTKKEAFRQLSYRFHGHQPGKKKQEKRLKQLKEE 109          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: A0A485L1Q9_9STRA (Aste57867_14843 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1Q9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.030e-18
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNEKFH--RSGRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEE 293
            +PL ++GMAATLALLR  G LN+K    +SGRA D R+   E +   +D   G KL+YRDE+GR +T+KEAFR + Y+FHG+  GKK+QEKRLK ++EE
Sbjct:  559 EPLVQSGMAATLALLRNRGDLNDKIQVRQSGRANDHRERDIEDELQVKD---GVKLDYRDEFGRLLTKKEAFRRISYRFHGHTPGKKRQEKRLKQIKEE 654          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: A0A024TXF0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXF0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.640e-18
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNE--KFHRSGRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEE 293
            +PL + GMAATLALLR  G L E  +  ++GRA D R  H E +   +D   G KL+YRDE+GR +T+KEAFR + Y+FHG+  GKKKQEKRLK ++EE
Sbjct:  634 EPLVQTGMAATLALLRNRGDLKETVQVRQAGRANDHRDKHIEDELQVKD---GVKLDYRDEFGRLLTKKEAFRRISYRFHGHTPGKKKQEKRLKQIKEE 729          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: A0A7S3XYP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYP2_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 3.350e-18
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNEK---FHRSGRAKDARKHHGE-ADETRED---RESGA---KLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEEK 296
            QPLA  G+AA LAL R +G L+        +GRA D R  H E A + + D   +E G    K+EYRDE+GRE+TRKEAFR L YKFHG+G G++K++KRLK VEEEK
Sbjct:   27 QPLASGGLAAALALARTTGDLSAAPVVQRLAGRAHDERDFHYEKAIDQKNDQLMKELGTREVKIEYRDEFGRELTRKEAFRQLSYKFHGHGPGQRKRDKRLKKVEEEK 134          
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Match: W4G1G8_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1G8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.140e-18
Identity = 52/99 (52.53%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    3 QPLAKNGMAATLALLRPSGVLNE--KFHRSGRAKDARKHHGEADETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKTVEEE 293
            +PL + GMAATLALLR  G L +  +  ++GRA D R+ + E +   +D   G KL+YRDE+GR +T+KEAFR + Y+FHG+  GKKKQEKRLK ++EE
Sbjct:  623 EPLVQTGMAATLALLRNRGDLRDAIQIRQAGRANDHRERNVEEELQIKD---GVKLDYRDEFGRLLTKKEAFRRISYRFHGHTPGKKKQEKRLKQIKEE 718          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13393.2541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC27_ECTSI2.720e-5998.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9M6_9STRA7.810e-2455.66SART-1 family-domain-containing protein n=1 Tax=Tr... [more]
A0A6A5ABK5_9STRA2.050e-1953.54Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S2XZB3_9STRA2.160e-1953.40Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
K3X7K3_GLOUD3.940e-1955.56Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9YTX2_9STRA4.090e-1954.55U4/U6.U5 tri-snRNP-associated protein (Fragment) n... [more]
A0A485L1Q9_9STRA1.030e-1854.55Aste57867_14843 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TXF0_9STRA2.640e-1854.55Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S3XYP2_HETAK3.350e-1853.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W4G1G8_9STRA9.140e-1852.53Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13393contigE-fasciculatus_F_contig13393:1767..2927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSART-1 protein
Ec32 orthologEc-20_004200.2
Exons3
Model size343
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13393.2541.1prot_E-fasciculatus_F_contig13393.2541.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13393 1767..2927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927839.3640497-CDS-E-fasciculatus_F_contig13393:1766..18401622927839.3640497-CDS-E-fasciculatus_F_contig13393:1766..1840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13393 1767..1840 +
1695995717.4917305-CDS-E-fasciculatus_F_contig13393:1766..18401695995717.4917305-CDS-E-fasciculatus_F_contig13393:1766..1840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13393 1767..1840 +
1622927839.3777335-CDS-E-fasciculatus_F_contig13393:2316..24721622927839.3777335-CDS-E-fasciculatus_F_contig13393:2316..2472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13393 2317..2472 +
1695995717.501368-CDS-E-fasciculatus_F_contig13393:2316..24721695995717.501368-CDS-E-fasciculatus_F_contig13393:2316..2472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13393 2317..2472 +
1622927839.3922036-CDS-E-fasciculatus_F_contig13393:2815..29271622927839.3922036-CDS-E-fasciculatus_F_contig13393:2815..2927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13393 2816..2927 +
1695995717.5111337-CDS-E-fasciculatus_F_contig13393:2815..29271695995717.5111337-CDS-E-fasciculatus_F_contig13393:2815..2927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13393 2816..2927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13393.2541.1

>prot_E-fasciculatus_F_contig13393.2541.1 ID=prot_E-fasciculatus_F_contig13393.2541.1|Name=mRNA_E-fasciculatus_F_contig13393.2541.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
SSPWRRTAWRRPSPFSGHRVSSMKSSTVPGERRTRESTTGRRTRHARIES
RAPSWNTATSGGGRSPERKRSATSATSSTGTVPARRSRRSGSRLWRKRRR
RSEPWTYNDSSTS*
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mRNA from alignment at E-fasciculatus_F_contig13393:1767..2927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13393.2541.1 ID=mRNA_E-fasciculatus_F_contig13393.2541.1|Name=mRNA_E-fasciculatus_F_contig13393.2541.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1161bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13393:1767..2927+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGCCCCTGGCGAAGAACGGCATGGCGGCGACCCTCGCCCTTCTCAGG CCATCGGGTGTCCTCAATGAAAAGGTGTGTCAAGGTGACGGCAGCAGCTG CAGAGAAAGAGGTAGCGGTAGAGAATGGACTAGGTTGTCGCACGCACTGG AGTTGTTTTCTTCCAAGGCTTTTCGTTTCCGTTCACCCACGATTAGATAA GACTAATTCTTGGTCAAGACTTGTTTGTTTCCTGCTTACTGTTTGTCTCT CTGTGAAAAGAGGGCATCATCAATTCGTCCTCCGACAGACATGGGAGAGA GAGTTGGTATTCTAACCTTCATGAAGGAGATATCCGCGTCTCATACGCTA TGTGAACCTGACTTTTGCTCCTAGTGTTCCGTCTAGTGTTGCACTCTCTC CTATGCGTTGGAGACGTGTTTCCGACTTTTTACGGCCCTGTCCTTGCTCA TTATTTGTCTCCCTCTCCGGGTTGGACGATGATACACTTCGTCTACAAGT TCCCGACTTGTTTTTTTTCCTGTGCGGTGTTTGGCCATGTTCGTTCCCAG TTCCACCGTTCCGGGCGAGCGAAGGACGCGAGAAAGCACCACGGGGAGGC GGACGAGACACGCGAGGATCGAGAGTCGGGCGCCAAGCTGGAATACCGCG ACGAGTGGGGGAGGGAGATCACCCGAAAGGAAGCGTTCCGCAACCTCTGC TACAAGGTGTCTTATTGTTGACGTTGTTGTTGCTGTTTTTGTTGTTTTGG TTTTTGTCTTTGTTGTTTTTTTTTGTGGTGGTGGTGGAGACGACTCGTGG GAACAAGATCGCTAGCGGGCCACGTTTTTGTCTTCATCAAGCGAGGCGTG TCGTCGTCGTCCTCCTCCTTGTTAGTTCTGGCTAATGTAATGTAACGTAA TATGGTTCGTGACATCTCCCGTGCTTGTTGTTTCCATCGCTGTTTTCAAC CTCTCCATTTCTGTCGTGTGTCCTCCCAGGACTTTAGCGTATATGATGAC CGCCACGCGTCTTTTTTCATTGTCGGTGTCTTTTTCTTTTTTTTTTCAGT TCCACGGGTACGGTTCCGGCAAGAAGAAGCAGGAGAAGCGGCTCAAGACT GTGGAGGAAGAGAAGAAGAAGGAGCGAGCCATGGACCTACAACGACTCAA GTACGTCTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13393:1767..2927+

>mRNA_E-fasciculatus_F_contig13393.2541.1 ID=mRNA_E-fasciculatus_F_contig13393.2541.1|Name=mRNA_E-fasciculatus_F_contig13393.2541.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13393:1767..2927+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGCCCCTGGCGAAGAACGGCATGGCGGCGACCCTCGCCCTTCTCAGG
CCATCGGGTGTCCTCAATGAAAAGAGCAGCCCCTGGCGAAGAACGGCATG
GCGGCGACCCTCGCCCTTCTCAGGCCATCGGGTGTCCTCAATGAAAAGTT
CCACCGTTCCGGGCGAGCGAAGGACGCGAGAAAGCACCACGGGGAGGCGG
ACGAGACACGCGAGGATCGAGAGTCGGGCGCCAAGCTGGAATACCGCGAC
GAGTGGGGGAGGGAGATCACCCGAAAGGAAGCGTTCCGCAACCTCTGCTA
CAAGTTCCACCGTTCCGGGCGAGCGAAGGACGCGAGAAAGCACCACGGGG
AGGCGGACGAGACACGCGAGGATCGAGAGTCGGGCGCCAAGCTGGAATAC
CGCGACGAGTGGGGGAGGGAGATCACCCGAAAGGAAGCGTTCCGCAACCT
CTGCTACAAGTTCCACGGGTACGGTTCCGGCAAGAAGAAGCAGGAGAAGC
GGCTCAAGACTGTGGAGGAAGAGAAGAAGAAGGAGCGAGCCATGGACCTA
CAACGACTCAAGTACGTCTTGATTCCACGGGTACGGTTCCGGCAAGAAGA
AGCAGGAGAAGCGGCTCAAGACTGTGGAGGAAGAGAAGAAGAAGGAGCGA
GCCATGGACCTACAACGACTCAAGTACGTCTTGA
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