mRNA_E-fasciculatus_F_contig13378.2529.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13378.2529.1
Unique NamemRNA_E-fasciculatus_F_contig13378.2529.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 3.370e-104
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 1 
Query:   19 MFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            MFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESE+LDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCL+FA VEQKLGE+DRARAV TYGSQFADPRRAEPYWQ
Sbjct:    1 MFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESERLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLSFAAVEQKLGEIDRARAVWTYGSQFADPRRAEPYWQ 159
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: A0A7S2W251_9STRA (Glycine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.830e-56
Identity = 91/163 (55.83%), Postives = 131/163 (80.37%), Query Frame = 1 
Query:    7 QGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            +GV+ F +P+VK +W +YL+RF++RY G KLERARDLFEQA++  P   + +L+++YAKLEE HGL+RHA +V DRA  AVEE+++ DM+ LY+ K ES+YGVT+TRQ+YE+AIK L +  A++M + +ATVE+KLGE+DRARA+ T+GSQF +P+R   +W+
Sbjct:  569 KGVAAFRWPHVKALWHQYLDRFIKRYAGDKLERARDLFEQALKDCPADTSAELFLKYAKLEEQHGLVRHAMAVYDRAVQAVEEAQRFDMYMLYIRKAESFYGVTRTRQIYEQAIKLLPDVDAQKMAVQYATVEKKLGEIDRARAIFTHGSQFTNPKREPEFWK 731
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: UPI001EECC3A9 (pre-mRNA-splicing factor syf1 homolog n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EECC3A9)

HSP 1 Score: 189 bits (479), Expect = 3.370e-56
Identity = 93/165 (56.36%), Postives = 115/165 (69.70%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            Y +G+++F +PNV  IW  YL +F+ RYGG+KLERARDLFEQ VE  P K A  LY+ YAKLEE HGL RHA +V +RA AAV   E  ++F +Y+ K    YGV QTRQ+YEKAI  L E+  REMCL FA +E KLGE+DRARA+  + SQ  DPR    +WQ
Sbjct:   31 YEKGIALFKWPNVYDIWNTYLTKFLNRYGGTKLERARDLFEQCVENCPPKFAKALYLLYAKLEEDHGLARHAMAVYERATAAVLPEEMFELFNIYIKKAAEIYGVPQTRQIYEKAIDVLQEDNCREMCLRFAEMETKLGEIDRARAIYAHCSQICDPRVTAEFWQ 195
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: C3Z7Y5_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z7Y5_BRAFL)

HSP 1 Score: 191 bits (485), Expect = 1.630e-55
Identity = 92/165 (55.76%), Postives = 119/165 (72.12%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            Y +G+++F +PNV  IW  YL +F++RYGG KLERARDLFEQ +E  P K A + Y+ YAKLEE HGL RHA +V DR+  AV+  E+ +MF +Y+ +    +GVT TRQ+YEKAI+ L EE AREMCL FA +E+KLGE+DRARAV  + SQ  DPR    +WQ
Sbjct:  194 YERGIALFRWPNVYDIWNMYLTKFIDRYGGKKLERARDLFEQCLEDCPPKYAKNFYLLYAKLEEEHGLQRHAMAVYDRSTKAVQPDEQYEMFNIYIKRAAEIFGVTYTRQIYEKAIEMLPEEHAREMCLRFADLEKKLGEIDRARAVYAHCSQMCDPRTTASFWQ 358
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: UPI0011449089 (pre-mRNA-splicing factor SYF1-like n=1 Tax=Formica exsecta TaxID=72781 RepID=UPI0011449089)

HSP 1 Score: 188 bits (478), Expect = 3.610e-55
Identity = 94/158 (59.49%), Postives = 114/158 (72.15%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPR 474
            Y +G+++F +PNV  IW  YL +F+ RYGG+KLER RDLFEQ +E  P K A  LY+ YAKLEE HGL RHA SV +RA  AV   EK DMF +Y+ K    YGV +TRQ+YEKAI+DLN+E  REMCL FA +E KLGEVDRARA+  Y SQ  +PR
Sbjct:  262 YEKGIALFKWPNVYDIWNTYLTKFLTRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEEEHGLARHAMSVYERATNAVLLEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEDLNDENTREMCLRFAEMETKLGEVDRARAIYAYCSQICNPR 419
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: A0A1B6L619_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6L619_9HEMI)

HSP 1 Score: 186 bits (472), Expect = 2.750e-54
Identity = 92/165 (55.76%), Postives = 114/165 (69.09%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            Y +G+++F +PNV  IW  YL +F+ RYGG+KLERARDLFEQ VE  P K A  LY+ YAKLEE HGL RHA +V +RA AAV   E  ++F +Y+ K    YGV QTRQ+YEKAI  L E+  REMC  FA +E KLGE+DRARA+  + SQ  DPR    +WQ
Sbjct:  262 YEKGIALFKWPNVYDIWNTYLTKFLNRYGGTKLERARDLFEQCVEHCPPKFAKALYLLYAKLEEDHGLARHAMAVYERATAAVLPEEMFELFNIYIKKAAEIYGVPQTRQIYEKAIDVLQEDNCREMCQRFAEMETKLGEIDRARAIYAHCSQICDPRVTAEFWQ 426
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: A0A0J7KPA6_LASNI (Pre-mrna-splicing factor syf1-like protein n=2 Tax=Formicidae TaxID=36668 RepID=A0A0J7KPA6_LASNI)

HSP 1 Score: 191 bits (484), Expect = 3.820e-54
Identity = 96/165 (58.18%), Postives = 116/165 (70.30%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            Y +G+++F +PNV  IW  YL +F+ RYGG+KLER RDLFEQ +E  P K A  LY+ YAKLEE HGL RHA SV +RA  AV   EK DMF +Y+ K    YGV +TRQ+YEKAI+ LN+E  REMCL FA +E KLGEVDRARAV  + SQ  DPR    +WQ
Sbjct:  384 YEKGIALFKWPNVYDIWNTYLTKFLIRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEEEHGLARHAMSVYERATNAVLPEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENTREMCLRFAEMETKLGEVDRARAVYAHCSQICDPRVTSNFWQ 548
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: UPI0006C95772 (pre-mRNA-splicing factor SYF1 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C95772)

HSP 1 Score: 192 bits (489), Expect = 3.920e-54
Identity = 93/165 (56.36%), Postives = 120/165 (72.73%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            Y +G+++F +PNV  IW  YL +F++RYGGSKLER+RDLFEQ +E  P K A  LY+ YAKLEE HGL RHA SV +RA  AV + E+  MF +Y+ K    YGV +TR++YEKAI+ L EE AREMC+ +A +E KLGEVDRARA+  + SQF+DPR    +WQ
Sbjct:  550 YEKGIALFRWPNVYDIWNTYLTKFLQRYGGSKLERSRDLFEQCLENCPPKYAKALYLLYAKLEEEHGLARHAMSVYERATGAVLDEERFGMFNIYIKKAADIYGVPKTREIYEKAIEVLKEENAREMCMRYADMETKLGEVDRARAIYIHCSQFSDPRMTNKFWQ 714
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BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: A0A507DJ62_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DJ62_9FUNG)

HSP 1 Score: 185 bits (469), Expect = 4.550e-54
Identity = 92/165 (55.76%), Postives = 122/165 (73.94%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            Y +GV++F++P    IW  YL++FV+RY GSKLERARDLFEQA+  VP   A  LYI YAKLEE +GL RHA  + +RA +AV +++K  MF LY+AK  S++G+T TR++YEKAI+ L +  AR+M L FA +E  LGEVDRARAVL+Y SQF DPR  + +W+
Sbjct:  199 YERGVALFNYPIAFEIWNLYLDKFVKRYSGSKLERARDLFEQALANVPANQANTLYIAYAKLEEDYGLARHAMRIYNRATSAVADADKKSMFELYIAKATSYFGLTSTREIYEKAIEVLPDAQARDMGLRFAELEVTLGEVDRARAVLSYVSQFCDPRMDDVFWK 363
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Match: A0A1Y2GLH5_9FUNG (Pre-mRNA splicing factor Syf-1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GLH5_9FUNG)

HSP 1 Score: 192 bits (489), Expect = 4.690e-54
Identity = 88/165 (53.33%), Postives = 121/165 (73.33%), Query Frame = 1 
Query:    1 YMQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQ 495
            Y +G+ +F +P    +W  YL +F+ RYGG+KLERARDLFEQA++K+P K A  LY+ Y +LEETHGL RHA S+ DRA  AV   ++ DM+  Y+AK  + +GVT TR++YE+AI+ L ++ AR MC+ FA +E+KLGE+DRAR +  +GSQF+DPR A  YWQ
Sbjct:  624 YERGIDLFGYPIAFELWNTYLLKFINRYGGTKLERARDLFEQALDKMPAKYAKPLYLMYGELEETHGLARHAMSIYDRATKAVASEDRADMYHFYIAKAATMFGVTSTREIYERAIETLPDKDARMMCMRFAEMERKLGEIDRARGIFAHGSQFSDPRIASDYWQ 788
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13378.2529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C7_ECTSI3.370e-10496.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2W251_9STRA1.830e-5655.83Glycine--tRNA ligase n=1 Tax=Rhizochromulina marin... [more]
UPI001EECC3A93.370e-5656.36pre-mRNA-splicing factor syf1 homolog n=1 Tax=Homa... [more]
C3Z7Y5_BRAFL1.630e-5555.76Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
UPI00114490893.610e-5559.49pre-mRNA-splicing factor SYF1-like n=1 Tax=Formica... [more]
A0A1B6L619_9HEMI2.750e-5455.76Uncharacterized protein (Fragment) n=1 Tax=Graphoc... [more]
A0A0J7KPA6_LASNI3.820e-5458.18Pre-mrna-splicing factor syf1-like protein n=2 Tax... [more]
UPI0006C957723.920e-5456.36pre-mRNA-splicing factor SYF1 n=1 Tax=Trichogramma... [more]
A0A507DJ62_9FUNG4.550e-5455.76Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A1Y2GLH5_9FUNG4.690e-5453.33Pre-mRNA splicing factor Syf-1 n=1 Tax=Lobosporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13378contigE-fasciculatus_F_contig13378:937..3462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score316.2
Seed ortholog evalue8.8e-84
Seed eggNOG ortholog2880.D7G3C7
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-21_002830.1
Exons4
Model size495
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13378.2529.1prot_E-fasciculatus_F_contig13378.2529.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13378 940..3462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927837.6890998-UTR-E-fasciculatus_F_contig13378:936..9391622927837.6890998-UTR-E-fasciculatus_F_contig13378:936..939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13378 937..939 +
1695995716.862504-UTR-E-fasciculatus_F_contig13378:936..9391695995716.862504-UTR-E-fasciculatus_F_contig13378:936..939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13378 937..939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927837.7025492-CDS-E-fasciculatus_F_contig13378:939..10621622927837.7025492-CDS-E-fasciculatus_F_contig13378:939..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 940..1062 +
1695995716.8754656-CDS-E-fasciculatus_F_contig13378:939..10621695995716.8754656-CDS-E-fasciculatus_F_contig13378:939..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 940..1062 +
1622927837.713965-CDS-E-fasciculatus_F_contig13378:1701..18691622927837.713965-CDS-E-fasciculatus_F_contig13378:1701..1869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 1702..1869 +
1695995716.8852916-CDS-E-fasciculatus_F_contig13378:1701..18691695995716.8852916-CDS-E-fasciculatus_F_contig13378:1701..1869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 1702..1869 +
1622927837.7227974-CDS-E-fasciculatus_F_contig13378:2503..25871622927837.7227974-CDS-E-fasciculatus_F_contig13378:2503..2587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 2504..2587 +
1695995716.8977995-CDS-E-fasciculatus_F_contig13378:2503..25871695995716.8977995-CDS-E-fasciculatus_F_contig13378:2503..2587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 2504..2587 +
1622927837.7346697-CDS-E-fasciculatus_F_contig13378:3345..34621622927837.7346697-CDS-E-fasciculatus_F_contig13378:3345..3462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 3346..3462 +
1695995716.915737-CDS-E-fasciculatus_F_contig13378:3345..34621695995716.915737-CDS-E-fasciculatus_F_contig13378:3345..3462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13378 3346..3462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13378.2529.1

>prot_E-fasciculatus_F_contig13378.2529.1 ID=prot_E-fasciculatus_F_contig13378.2529.1|Name=mRNA_E-fasciculatus_F_contig13378.2529.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MQGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKD
AGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVES
WYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYG
SQFADPRRAEPYWQ
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mRNA from alignment at E-fasciculatus_F_contig13378:937..3462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13378.2529.1 ID=mRNA_E-fasciculatus_F_contig13378.2529.1|Name=mRNA_E-fasciculatus_F_contig13378.2529.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2526bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13378:937..3462+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TATATGCAGGGCGTGAGCATGTTCTCCTTCCCCAACGTGAAGCCCATCTG
GATCCGTTACCTGGAACGGTTCGTGGAGCGCTACGGGGGTTCCAAGCTGG
AGAGGGCGCGAGACTTGTTCGAGCAGGTGTGCGGCATGCTTGGGCACGTT
CTGGATGTGTGTGTGGTGCGGTATCATACTCGAAAGCACAAGGACCTTTT
TTTGTGGATTGTGGGTGTGTGGTGCGGTAAACAAGGTACTAATGCACAAG
ATATTTTTTAGTAGGTTGTGTGTGTGTGGTGTGGTGTTATTCTCAAAAGC
AGAAGCACAATTTTATGGTTTGTGTCTGTGCGAGGTGCGGTATACCAAAT
ATACTCTCGAAACCACAAGAACCTCTTGAGAGATTTGTGTGGTGCGGAAC
ACCGAGTAAACTCGAGAACACAATATCTTTTTTTTTGTGGGGTTGTATTT
TTGCCTTCCTTGTTGCGGGTGTTATTTGTTTCGCTTTTTTCGTCTCTGCC
GTTCTCGTTCAAATGTCATCGTACGCATGAGAGAGGAACCGCTTTTTTTT
TTCTTCGATGGCTTCTTCCTTCCGTCCTTCGTATTGTTACATTTGCTTTT
TGTAGTCTCAGGCAGTGGAGAAAGTCCGTACGCGTGAGAGGGGGTACATG
TTCCACTTTGATTTTATTATATTTCTTTCCTTCCCTCCTTCCTTCCTTCC
TTCCTTATTTATTTATTTGTTTGTTTATTTATTTATTTATTTTTTGCTTT
TTTTTATCGTCTTAGGCTGTGGAGAAGGTCCCCGAGAAGGACGCCGGGGA
CCTGTACATCCGCTACGCCAAGCTCGAGGAGACGCACGGCCTCATGCGCC
ACGCGGCCTCGGTGTTGGACCGCGCGTGCGCCGCCGTGGAGGAATCGGAG
AAGCTAGACATGTTCCGCCTCTACGTTGCAAAGGTACGAAAATAGGGTAT
GAAGGGATCAAAATATCTAGCACGTTGCCAAGGTACCGTAGAGGGTACAA
GGAACGTTACCAAGGTACAAAAAAAAAAGGTTTGAAGGGTACCAGGTATG
CCGCAGTTTTTCTTGTCTGCCCACGAGGGTTCTGAAGCTGTAGGTTTTGG
GCAGTCAGTCACGTTTTGTTTTTGCTGTGTTGTTGGCCTACGATTAACTA
AGTCACACCAGCAGCAGCACCCAGTGTTCGTTCTGTGGCAGCTGCTCAGG
GCAGCGAACACCACGCATCTAACTGTTTCGACGAAACGAAATGTTTAGTT
GGATGATGCGAAAACATCAAGGCGTTCGATAGGTTTTGGTGACGTAGATA
CGGCTTCGTCCGATGGTTTTGGTGTTTTCGGGGATCCAGCTTAGGGCTTG
TGGCAAAGGTTAAAGTTTGTTTCTGAGACAATGATTCCATGGAGGCGGGT
TGACGAATTGTTCTCTTCTTTGCCCTCCATTATCCGCTCTGTCTGCTTCT
GTATCTAGCTCTCCCTCTGTGCATGACTAGCTCTCTCTCGCTTGCCCTCT
GTGTCCCCTCTTGTTTCATTAACGCGGCATGTGTGATGTTGTTGTTCTCA
TCCTTATCCTTATCCAGGTGGAGTCGTGGTACGGCGTCACCCAAACCCGG
CAGGTGTACGAGAAGGCCATCAAGGATCTCAACGAGGAGGGGGCTAGGGA
GGTGAGACAGACAGACACACACAGAGGAAAGGAACACGGGCAGACACAAC
ACACAGACACACAGACAGACGACGCACGAAGACATAGGGTAGGTAGGTAG
GTAGACAGACACAGACAGACGACACACGAGACTTTGGTAGGTAGATAGGG
GACACAGGCAGTCACAGACACATGTAGAGACGACCGGCGGGCAGATAGAC
CGCCAGTCACGACACATGTAGAGACGACAGATGGGTAGATAGATGGACCG
ACACATCACCTGGTGCGTACATAAACGCGTGTGGGGAATTCGGAGTACTT
GGCAGACAACGAGTCCAGGGCGGAGAGAGGGGGACAGGAGCCGAAACGTG
CATTAGTGCCAATCGCGGTCGTGCACATGCATGCGATGTGTACGCTGCGC
TTCCCCTCTCGACCGTGAGACTCCCCCCTGTACCCTTTTTTTGGTGTTGT
GGTGGTCGTGGTTTGTGCCTGCTGCTGTAGACGTGCGTGTGGTGGCTGGA
CTGGAGTGATGATGACCGCGTGTTCGAACGTTGCTCTTTTTCTCTCCCTG
TGGTCGTCTGGTCTTTAGTCGTCCAAACCTTGTTGGGATGTAAATTTGTC
AACACGTTTTCTCGTCCGGCAGTTGCCCTTCAACAGTTCCTCCTCTGGCC
GTGCCTTTTTTATTTTTGTTCTCCACGCAAGGCGCTTTCCCTTCTAATTT
TGTTGTTGTGTTTCCTTCTCCCTCGGTCGCCGTTGGTTGTTGACACCGAC
CGTGTGCAGATGTGCTTGGCGTTCGCGACGGTGGAGCAGAAGCTGGGAGA
GGTGGACAGGGCCAGGGCCGTCTTGACCTACGGCAGCCAGTTCGCGGACC
CGAGGAGGGCCGAGCCCTACTGGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13378:937..3462+

>mRNA_E-fasciculatus_F_contig13378.2529.1 ID=mRNA_E-fasciculatus_F_contig13378.2529.1|Name=mRNA_E-fasciculatus_F_contig13378.2529.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13378:937..3462+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGGCGTGAGCATGTTCTCCTTCCCCAACGTGAAGCCCATCTGGAT
CCGTTACCTGGAACGGTTCGTGGAGCGCTACGGGGGTTCCAAGCTGGAGA
GGGCGCGAGACTTGTTCGAGCAGATGCAGGGCGTGAGCATGTTCTCCTTC
CCCAACGTGAAGCCCATCTGGATCCGTTACCTGGAACGGTTCGTGGAGCG
CTACGGGGGTTCCAAGCTGGAGAGGGCGCGAGACTTGTTCGAGCAGGCTG
TGGAGAAGGTCCCCGAGAAGGACGCCGGGGACCTGTACATCCGCTACGCC
AAGCTCGAGGAGACGCACGGCCTCATGCGCCACGCGGCCTCGGTGTTGGA
CCGCGCGTGCGCCGCCGTGGAGGAATCGGAGAAGCTAGACATGTTCCGCC
TCTACGTTGCAAAGGCTGTGGAGAAGGTCCCCGAGAAGGACGCCGGGGAC
CTGTACATCCGCTACGCCAAGCTCGAGGAGACGCACGGCCTCATGCGCCA
CGCGGCCTCGGTGTTGGACCGCGCGTGCGCCGCCGTGGAGGAATCGGAGA
AGCTAGACATGTTCCGCCTCTACGTTGCAAAGGTGGAGTCGTGGTACGGC
GTCACCCAAACCCGGCAGGTGTACGAGAAGGCCATCAAGGATCTCAACGA
GGAGGGGGCTAGGGAGGTGGAGTCGTGGTACGGCGTCACCCAAACCCGGC
AGGTGTACGAGAAGGCCATCAAGGATCTCAACGAGGAGGGGGCTAGGGAG
ATGTGCTTGGCGTTCGCGACGGTGGAGCAGAAGCTGGGAGAGGTGGACAG
GGCCAGGGCCGTCTTGACCTACGGCAGCCAGTTCGCGGACCCGAGGAGGG
CCGAGCCCTACTGGCAGATGTGCTTGGCGTTCGCGACGGTGGAGCAGAAG
CTGGGAGAGGTGGACAGGGCCAGGGCCGTCTTGACCTACGGCAGCCAGTT
CGCGGACCCGAGGAGGGCCGAGCCCTACTGGCAG
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