prot_E-fasciculatus_F_contig13324.2500.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig13324.2500.1
Unique Nameprot_E-fasciculatus_F_contig13324.2500.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length107
Homology
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.040e-60
Identity = 94/106 (88.68%), Postives = 96/106 (90.57%), Query Frame = 0
Query:    1 VSALVRAAVRRPAAXXXXXXXRSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAKCKEEREG 106
            VSALVRAAVRRPAA       RSMSGDAAHAAEEMAKWKKMTAGM VLSLAVTTLVLATEEHHH DEDAP+PSYMKIRNKPHPWNCADCTLLD+ACFAKCK EREG
Sbjct:    2 VSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAEREG 107          
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A7S3ZZW1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.540e-15
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 0
Query:   22 RSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHH--HPDEDAPVP-SYMKIRNKPHPWNCADCTLLDTACFAKCK 101
            R MSGDAA AA EMAKW K + G       ++T +   E  H  HP E   +  S+MKIR KP+PW+C DC L +  CF  CK
Sbjct:   22 RMMSGDAAEAAIEMAKWTKYSYGAIAFCGVLSTYIGIVEYRHMMHPHEHEDIAYSHMKIRAKPYPWDCPDCNLFEAQCFRDCK 104          
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A662YHV6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHV6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.990e-10
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 0
Query:   35 MAKWKKMTAGMAVL--SLAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAK 99
            M +W  ++ GM  L  +  V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD AC AK
Sbjct:    1 MHRWNTISKGMIALVGAFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 67          
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.070e-10
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   22 RSMSGD--AAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAKCKEERE 105
            R+MSG      A  +M  W K++  +A+  ++V  +V+   E  H   +AP  S+ KIR KP+PW C+DCTL D  C+ +C+  +E
Sbjct:   22 RAMSGGHCPVQAEADMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFDLECWKECRANKE 106          
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A662YJ33_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ33_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.030e-10
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   31 AAEEMAKWKKMTAGMAVLS--LAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAK 99
            A E+M +W  ++ GM  L     V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD AC AK
Sbjct:  178 AKEQMHRWNTISKGMIALVGVFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 248          
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A5D6XZ58_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ58_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.070e-7
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 0
Query:   25 SGDAAHAAEEMAKWKKMTAGMAVLSLAVTTL-VLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTAC 96
            S   A A ++M +W +++ GM  L+  +T   V+A    H   E+AP  +Y+K+RNKP PW  + C LLD+ C
Sbjct:    3 SATEAEAKDQMIRWTQISKGMIGLTTLLTAYNVVAHFGGHEHHEEAPSYAYLKLRNKPFPWEYSGCDLLDSHC 75          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHU0_ECTSI1.040e-6088.68Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A7S3ZZW1_9STRA9.540e-1546.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662YHV6_9STRA1.990e-1043.28Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S2G097_9STRA2.070e-1037.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A662YJ33_9STRA9.030e-1043.66Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A5D6XZ58_9STRA2.070e-738.36Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10coord: 24..92
e-value: 2.0E-9
score: 39.3
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 26..92
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 9..103
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIALcoord: 9..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13324contigE-fasciculatus_F_contig13324:1600..3450 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13324.2500.1mRNA_E-fasciculatus_F_contig13324.2500.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig13324 1600..3450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig13324.2500.1 ID=prot_E-fasciculatus_F_contig13324.2500.1|Name=mRNA_E-fasciculatus_F_contig13324.2500.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
VSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMAVLSL
AVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAKC
KEEREG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001349Cyt_c_oxidase_su6a
IPR036418Cyt_c_oxidase_su6a_sf