mRNA_E-fasciculatus_F_contig13324.2500.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13324.2500.1
Unique NamemRNA_E-fasciculatus_F_contig13324.2500.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.040e-60
Identity = 94/106 (88.68%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 VSALVRAAVRRPAAXXXXXXXRSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAKCKEEREG 318
            VSALVRAAVRRPAA       RSMSGDAAHAAEEMAKWKKMTAGM VLSLAVTTLVLATEEHHH DEDAP+PSYMKIRNKPHPWNCADCTLLD+ACFAKCK EREG
Sbjct:    2 VSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAEREG 107
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BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A7S3ZZW1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.540e-15
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   64 RSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHH--HPDEDAPVP-SYMKIRNKPHPWNCADCTLLDTACFAKCK 303
            R MSGDAA AA EMAKW K + G       ++T +   E  H  HP E   +  S+MKIR KP+PW+C DC L +  CF  CK
Sbjct:   22 RMMSGDAAEAAIEMAKWTKYSYGAIAFCGVLSTYIGIVEYRHMMHPHEHEDIAYSHMKIRAKPYPWDCPDCNLFEAQCFRDCK 104
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BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A662YHV6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHV6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.990e-10
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  103 MAKWKKMTAGMAVL--SLAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAK 297
            M +W  ++ GM  L  +  V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD AC AK
Sbjct:    1 MHRWNTISKGMIALVGAFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 67
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BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.070e-10
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   64 RSMSGD--AAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAKCKEERE 315
            R+MSG      A  +M  W K++  +A+  ++V  +V+   E  H   +AP  S+ KIR KP+PW C+DCTL D  C+ +C+  +E
Sbjct:   22 RAMSGGHCPVQAEADMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFDLECWKECRANKE 106
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BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A662YJ33_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ33_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.030e-10
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   91 AAEEMAKWKKMTAGMAVLS--LAVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAK 297
            A E+M +W  ++ GM  L     V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD AC AK
Sbjct:  178 AKEQMHRWNTISKGMIALVGVFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 248
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BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Match: A0A5D6XZ58_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ58_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.070e-7
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   73 SGDAAHAAEEMAKWKKMTAGMAVLSLAVTTL-VLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTAC 288
            S   A A ++M +W +++ GM  L+  +T   V+A    H   E+AP  +Y+K+RNKP PW  + C LLD+ C
Sbjct:    3 SATEAEAKDQMIRWTQISKGMIGLTTLLTAYNVVAHFGGHEHHEEAPSYAYLKLRNKPFPWEYSGCDLLDSHC 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13324.2500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHU0_ECTSI1.040e-6088.68Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A7S3ZZW1_9STRA9.540e-1546.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662YHV6_9STRA1.990e-1043.28Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S2G097_9STRA2.070e-1037.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A662YJ33_9STRA9.030e-1043.66Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A5D6XZ58_9STRA2.070e-738.36Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13324contigE-fasciculatus_F_contig13324:1600..3450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue3.6e-46
Seed eggNOG ortholog2880.D7FHU0
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
EggNOG OGs2BY4U@1,2SBT1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Exons3
Model size321
Cds size321
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13324.2500.1prot_E-fasciculatus_F_contig13324.2500.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13324 1600..3450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.8389823-CDS-E-fasciculatus_F_contig13324:1599..16961622927834.8389823-CDS-E-fasciculatus_F_contig13324:1599..1696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13324 1600..1696 +
1695995715.408558-CDS-E-fasciculatus_F_contig13324:1599..16961695995715.408558-CDS-E-fasciculatus_F_contig13324:1599..1696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13324 1600..1696 +
1622927834.8542798-CDS-E-fasciculatus_F_contig13324:2396..25121622927834.8542798-CDS-E-fasciculatus_F_contig13324:2396..2512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13324 2397..2512 +
1695995715.4282684-CDS-E-fasciculatus_F_contig13324:2396..25121695995715.4282684-CDS-E-fasciculatus_F_contig13324:2396..2512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13324 2397..2512 +
1622927834.8691795-CDS-E-fasciculatus_F_contig13324:3342..34501622927834.8691795-CDS-E-fasciculatus_F_contig13324:3342..3450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13324 3343..3450 +
1695995715.442718-CDS-E-fasciculatus_F_contig13324:3342..34501695995715.442718-CDS-E-fasciculatus_F_contig13324:3342..3450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13324 3343..3450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13324.2500.1

>prot_E-fasciculatus_F_contig13324.2500.1 ID=prot_E-fasciculatus_F_contig13324.2500.1|Name=mRNA_E-fasciculatus_F_contig13324.2500.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
VSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMAVLSL
AVTTLVLATEEHHHPDEDAPVPSYMKIRNKPHPWNCADCTLLDTACFAKC
KEEREG*
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mRNA from alignment at E-fasciculatus_F_contig13324:1600..3450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13324.2500.1 ID=mRNA_E-fasciculatus_F_contig13324.2500.1|Name=mRNA_E-fasciculatus_F_contig13324.2500.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1851bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13324:1600..3450+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTCTGCGCTGGTGAGGGCGGCGGTACGGCGGCCGGCGGCGGCGGCGGC
TTCTTCGGCCCGCCGCAGCATGAGCGGCGACGCCGCACACGCAGCCGGTG
AGCCGACCAGCAAACACCGCTTGGAATGCAACGTGGACCCTAATGGTGTT
TGGTAGCGTTGTAGTTGGTGTTGGTGCTAGTGTCGTTGGGTGGTGGTGGT
GGTGGTTTTGTTGTATACTGCTGTAGAAGTTGTTCAAGTTGTTTGCGGTC
GTGGTGTGGCAATGAAGCGAGGATGTCGACGCCGATGCGGGCAAGAAAGG
TCGGGCGCGTTACCCCTTCACCACCACACGAGCCTTCCTTCTCGAGCGAA
AAATACCACACAGCTTCCTCCTCTATTCAGGCCCGCTGTCCAAGCCAATA
CTTGCGCAAGCAATCGGGGAACAGCAGTCGTGAACACCGTACCCAACGTA
TTCAGTATTTAGGCGGCTCGTGAGGAAGATGGACTCAATCAAGCCATATC
CACGGCCTCCCTTGCTCCCGCCTATGAACCCCCTTCCCTCCCATGCCCGC
CCGCAAATTTATATTTTGATATGTCAGGCTGCAAGGACAAAAATTATAAA
TTTGATAAGGATCCCTGTGGCAGGCCCTCAACAAACACGCCGCTAACGAG
CACCCCAATGGATATCGAGTTTCTCCCCTATTTCGTGAGAAGCAGGAAAT
AAATGCACGCGTGATCGGCCGATAATCCAACCCCCCCCCCCCCTTTCTTT
CCCTGGCAATATGTTTTGCGAACCCTGCGGCGTGCGTGCCGAAACAGAGG
AGATGGCCAAGTGGAAGAAGATGACGGCCGGTATGGCGGTTTTGAGCTTG
GCCGTGACTACCCTGGTGCTTGCCACGGAGGAGCACCACCACCCGGACGA
AGATGCTCCGGTTGTGAGAACACCCACTTTTGTTTATTGTTTTTAAGCTC
CTGGTTTCGTGGTTGTGCTTTGTACGCAGCTTTGTAGGGAGAGGTGCAAG
ACGGAGCTCTCGTTCCGACACGTAAGTTTTTTTCAGTGGTTACTTTCTGG
TCGTGAAGCGTAGACACGAAAATATTCAAGTGTATATTTGATTTTGATAT
TTTTGTGTCATGAAAAACAAACACAAACACAGAAAGACTACATTTAGATG
TATCTACCCCTTGTTACCTTTGGGGGTCAGTCTTGCGTGTCACTCCCATT
TTGTGAAGCCAACTAATCAAGCTGCATGTCTAGTGTGAGCAAGTCTTGTT
GTGCAGACATGCCACGGGTGAATGTCGACCAAACACTTCATTCTCTCGTT
GTCTTCATTGAACCAACCCCCCGTCAGTTTTTGGCGTTTCTGGCCGTATT
GAACGGGATACGGCGGTTTGTTCCTCACATTTTTCGTTTGCCTGGAATAG
CATACGTGTCCGAGGGCTTCGTCCGGTGAAGTACGAAGACCTACGCGGGC
GCTGGACGAATGTAACCTGTCGAGAGCATGTACTGCCGTCAGTCCTCAAG
CCAACATCACTACTCACCATGTATGACAACATTGTTCCTAACCCGTGCAC
ACCCATGACCTTTTTTGAAGCCACTGACGCACCATCAATCATGTCGACAC
CATGCCCTCATTCGAGCGCCATATATGTAAGCCGCTCTTTGACACACCGT
TTTTCGTTCCGCCGCCTCTCTACGGTGCCTTTCGTCTACCCTTGTTCTGT
CTTTTTTTTCTTTTTTTTTCTTCACATCTGGATGTTCCCGCAGCCGTCGT
ACATGAAGATCCGCAACAAGCCGCATCCGTGGAACTGTGCCGACTGCACG
CTCCTGGACACGGCATGCTTCGCCAAGTGCAAGGAGGAGCGCGAGGGGTA
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13324:1600..3450+

>mRNA_E-fasciculatus_F_contig13324.2500.1 ID=mRNA_E-fasciculatus_F_contig13324.2500.1|Name=mRNA_E-fasciculatus_F_contig13324.2500.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13324:1600..3450+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTCTGCGCTGGTGAGGGCGGCGGTACGGCGGCCGGCGGCGGCGGCGGC
TTCTTCGGCCCGCCGCAGCATGAGCGGCGACGCCGCACACGCAGCCGGTT
TCTGCGCTGGTGAGGGCGGCGGTACGGCGGCCGGCGGCGGCGGCGGCTTC
TTCGGCCCGCCGCAGCATGAGCGGCGACGCCGCACACGCAGCCGAGGAGA
TGGCCAAGTGGAAGAAGATGACGGCCGGTATGGCGGTTTTGAGCTTGGCC
GTGACTACCCTGGTGCTTGCCACGGAGGAGCACCACCACCCGGACGAAGA
TGCTCCGGTTAGGAGATGGCCAAGTGGAAGAAGATGACGGCCGGTATGGC
GGTTTTGAGCTTGGCCGTGACTACCCTGGTGCTTGCCACGGAGGAGCACC
ACCACCCGGACGAAGATGCTCCGGTTCCGTCGTACATGAAGATCCGCAAC
AAGCCGCATCCGTGGAACTGTGCCGACTGCACGCTCCTGGACACGGCATG
CTTCGCCAAGTGCAAGGAGGAGCGCGAGGGGTAACCGTCGTACATGAAGA
TCCGCAACAAGCCGCATCCGTGGAACTGTGCCGACTGCACGCTCCTGGAC
ACGGCATGCTTCGCCAAGTGCAAGGAGGAGCGCGAGGGGTAA
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