prot_E-fasciculatus_F_contig13300.2483.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig13300.2483.1
Unique Nameprot_E-fasciculatus_F_contig13300.2483.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length109
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13300.2483.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.520e-14
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 0 
Query:    1 MLGRASCVPKKAHLVFGWVGLVVSVVVLCHAAHHIRRQQVLFHAQNAWAATSQIERCRRQMHIVAISVGAVHVFFFSLVL---RDLLWWAFVVMMA-GQIPVSIG 101
            +LG  SCVP KAH VFG VG+ V++  L HAA+ + RQ V +H Q   A+TS +E+CRR +HIV I    + + +F +VL    + LW + + M   GQI ++IG
Sbjct:   39 ILGLPSCVPSKAHAVFGAVGVFVTMTSLGHAAYQLYRQ-VKYHRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMFGIGQIMMTIG 142
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BLAST of mRNA_E-fasciculatus_F_contig13300.2483.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.860e-14
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = 0 
Query:    1 MLGRASCVPKKAHLVFGWVGLVVSVVVLCHAAHHIRRQQVLFHAQNAWAATSQIERCRRQMHIVAISVGAVHVFFFSLVL---RDLLWWAFVVMM-AGQIPVSIG 101
            ++G  SCVP KAH+VFG VG++++   LCH+A+ + RQ V  H Q   A+ S +E+CRR +HIV I    + + +F +VL    + LW + + M+ AGQ  ++IG
Sbjct:   39 IVGLPSCVPSKAHVVFGTVGVLMATTSLCHSAYQLYRQ-VKHHRQVITASISSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMLSAGQTMMTIG 142
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13300.2483.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM92_9PHAE1.520e-1443.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB1_ECTSI1.860e-1440.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 80..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 108..109
NoneNo IPR availableTMHMMTMhelixcoord: 15..32
NoneNo IPR availableTMHMMTMhelixcoord: 63..80
NoneNo IPR availableTMHMMTMhelixcoord: 85..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13300contigE-fasciculatus_F_contig13300:1764..3143 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13300.2483.1mRNA_E-fasciculatus_F_contig13300.2483.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig13300 1764..3143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig13300.2483.1 ID=prot_E-fasciculatus_F_contig13300.2483.1|Name=mRNA_E-fasciculatus_F_contig13300.2483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
MLGRASCVPKKAHLVFGWVGLVVSVVVLCHAAHHIRRQQVLFHAQNAWAA
TSQIERCRRQMHIVAISVGAVHVFFFSLVLRDLLWWAFVVMMAGQIPVSI
GIFVSTLRM
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