mRNA_E-fasciculatus_F_contig13300.2483.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13300.2483.1
Unique NamemRNA_E-fasciculatus_F_contig13300.2483.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13300.2483.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.520e-14
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:    1 MLGRASCVPKKAHLVFGWVGLVVSVVVLCHAAHHIRRQQVLFHAQNAWAATSQIERCRRQMHIVAISVGAVHVFFFSLVL---RDLLWWAFVVMMA-GQIPVSIG 303
            +LG  SCVP KAH VFG VG+ V++  L HAA+ + RQ V +H Q   A+TS +E+CRR +HIV I    + + +F +VL    + LW + + M   GQI ++IG
Sbjct:   39 ILGLPSCVPSKAHAVFGAVGVFVTMTSLGHAAYQLYRQ-VKYHRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMFGIGQIMMTIG 142
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13300.2483.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.860e-14
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 MLGRASCVPKKAHLVFGWVGLVVSVVVLCHAAHHIRRQQVLFHAQNAWAATSQIERCRRQMHIVAISVGAVHVFFFSLVL---RDLLWWAFVVMM-AGQIPVSIG 303
            ++G  SCVP KAH+VFG VG++++   LCH+A+ + RQ V  H Q   A+ S +E+CRR +HIV I    + + +F +VL    + LW + + M+ AGQ  ++IG
Sbjct:   39 IVGLPSCVPSKAHVVFGTVGVLMATTSLCHSAYQLYRQ-VKHHRQVITASISSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMLSAGQTMMTIG 142
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13300.2483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM92_9PHAE1.520e-1443.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB1_ECTSI1.860e-1440.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13300contigE-fasciculatus_F_contig13300:1764..3143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_004620.1
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927832.909752-CDS-E-fasciculatus_F_contig13300:1763..19761622927832.909752-CDS-E-fasciculatus_F_contig13300:1763..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13300 1764..1976 -
1695995714.42239-CDS-E-fasciculatus_F_contig13300:1763..19761695995714.42239-CDS-E-fasciculatus_F_contig13300:1763..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13300 1764..1976 -
1622927832.9332073-CDS-E-fasciculatus_F_contig13300:3029..31431622927832.9332073-CDS-E-fasciculatus_F_contig13300:3029..3143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13300 3030..3143 -
1695995714.432244-CDS-E-fasciculatus_F_contig13300:3029..31431695995714.432244-CDS-E-fasciculatus_F_contig13300:3029..3143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13300 3030..3143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13300.2483.1prot_E-fasciculatus_F_contig13300.2483.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13300 1764..3143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13300.2483.1

>prot_E-fasciculatus_F_contig13300.2483.1 ID=prot_E-fasciculatus_F_contig13300.2483.1|Name=mRNA_E-fasciculatus_F_contig13300.2483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
MLGRASCVPKKAHLVFGWVGLVVSVVVLCHAAHHIRRQQVLFHAQNAWAA
TSQIERCRRQMHIVAISVGAVHVFFFSLVLRDLLWWAFVVMMAGQIPVSI
GIFVSTLRM
back to top

mRNA from alignment at E-fasciculatus_F_contig13300:1764..3143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13300.2483.1 ID=mRNA_E-fasciculatus_F_contig13300.2483.1|Name=mRNA_E-fasciculatus_F_contig13300.2483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13300:1764..3143- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCGGGCGTGCCTCGTGTGTTCCTAAGAAGGCCCATCTCGTCTTTGG
TTGGGTCGGATTGGTGGTTTCCGTGGTAGTGCTTTGCCACGCAGCTCACC
ATATCAGGAGGCAGGTGAGGCGTACGTACATACATCATGATTTTCGAAAC
GATTCCCGAAAGATGGTACACACCATACGCATCATCCGACCGAACGACTT
TCCTGGTCAACATATACGCACACAACATTCTCCTTGCACGTCATGTGCTG
CTGTGTTTCGATGTGGTCTTGAGGGGACGACCGACCGAGTCCTCGAACTG
AAAAAAATAGAGTAGTATACGATCGAAGAGTTCGACTAGGGAAGGCTTAC
TGTGTGTAAGATACGAGCTGGCCTTCAGAACCGCGAGACATATGCGATGG
ATCACAAGCTTTACCAGCGTACGATAGCTGGTGCTGCACAGCAAACAGGA
AGAAGAAGTCGTGAACCACAGCAGTGGATTGGTGTTGCCTCATGGAGCAC
AATGAAGAATGTGCTGCTGTAGATATACTCCCTTGAAGGTTCGAAAAGAG
CTTCTAGAAGGCGCGAACAAAGCGAACTGCATTGTGCTCATGAAATCGTA
AGCTGAGCTCAAGAGAGGCAGTCTGTGCCACAGTTTCCAAGTAACCAACA
AGTTAAGGTTGATGTGAAGACAGACTCCCTCTAGTGCCTGTAGCACATGT
AGCGACCCACGCCATCGAGGTATATGGTTGCGGGGATACTCCCTTCAACA
TCGGAAGCATTGACATTGGTGGTGCAAACACCAATGCAGGTAGGGGTGGA
TTACCAATTCTTGAGCCAAGCAAGCAACATTACATATAATACTTCATACA
TCATGACTCTAGATTTGCAGATGCCGCAGGTCGAGTAGCCGCCGGGGCTC
GGGTGTAGTCGGCCTCGGGTACTCCGAGTCTCGAAAGACATCTTCGCCAA
CAGGATATAAATAAATCAAAGATGGGCCAGCCCTTTTGAAGAGCACACTG
CCTGGAGTTATCCAGAAAGAAGGTAGCTAACTGCCTTTCAGCCGAGAACC
AGTCCCAGACCGTTGCACGGACCGCCCGCCACGAACATTCATGCGCTGCT
GAAGACCATCCCCCATTCTCCCTCTCTCCCGGAAACTCTTGCCGCTGGCC
TCGCGACGCCGGACAAGCAGGTCTTGTTCCACGCGCAGAACGCATGGGCT
GCGACGTCGCAAATCGAGCGATGTCGCCGGCAAATGCACATCGTGGCGAT
CTCGGTTGGTGCTGTGCACGTCTTTTTCTTCTCTTTGGTGCTGCGAGACT
TGCTGTGGTGGGCTTTTGTGGTGATGATGGCTGGTCAGATCCCAGTTTCC
ATCGGCATCTTCGTCTCCACGCTTCGAATG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13300:1764..3143-

>mRNA_E-fasciculatus_F_contig13300.2483.1 ID=mRNA_E-fasciculatus_F_contig13300.2483.1|Name=mRNA_E-fasciculatus_F_contig13300.2483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13300:1764..3143- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCGGGCGTGCCTCGTGTGTTCCTAAGAAGGCCCATCTCGTCTTTGG
TTGGGTCGGATTGGTGGTTTCCGTGGTAGTGCTTTGCCACGCAGCTCACC
ATATCAGGAGGCAGATGCTCGGGCGTGCCTCGTGTGTTCCTAAGAAGGCC
CATCTCGTCTTTGGTTGGGTCGGATTGGTGGTTTCCGTGGTAGTGCTTTG
CCACGCAGCTCACCATATCAGGAGGCAGCAGGTCTTGTTCCACGCGCAGA
ACGCATGGGCTGCGACGTCGCAAATCGAGCGATGTCGCCGGCAAATGCAC
ATCGTGGCGATCTCGGTTGGTGCTGTGCACGTCTTTTTCTTCTCTTTGGT
GCTGCGAGACTTGCTGTGGTGGGCTTTTGTGGTGATGATGGCTGGTCAGA
TCCCAGTTTCCATCGGCATCTTCGTCTCCACGCTTCGAATGCAGGTCTTG
TTCCACGCGCAGAACGCATGGGCTGCGACGTCGCAAATCGAGCGATGTCG
CCGGCAAATGCACATCGTGGCGATCTCGGTTGGTGCTGTGCACGTCTTTT
TCTTCTCTTTGGTGCTGCGAGACTTGCTGTGGTGGGCTTTTGTGGTGATG
ATGGCTGGTCAGATCCCAGTTTCCATCGGCATCTTCGTCTCCACGCTTCG
AATG
back to top