mRNA_E-fasciculatus_F_contig13284.2471.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: D7G759_ECTSI (Weakly similar Glutamic acid-rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G759_ECTSI) HSP 1 Score: 551 bits (1419), Expect = 1.080e-188 Identity = 323/397 (81.36%), Postives = 335/397 (84.38%), Query Frame = 1
Query: 1 RVLLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTACRYFDLDVLCRVSEEGEAFRSFVDRYGTYVFKRAEGFNARFQELDTMQDEEGWEHVVTTLAKAQKAIDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVLTFLLDAEELLGIYGLHVPDLSLPAAHGFDTPSTQASTDSNSSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRKATTAPATNTKTAASRAKAYRASXXXXXXXXXXXXXXXXXXXXXXXXXXSKGGDATMRNAAVKGGGARRGVDRKQPAVPPGVEGTCDTG--GGVGE 1185
RVLLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFL KMSREWDKKTACRYFDLDVLCRVSEEGEAFRSFVDRYGTYVFKRAEGFNARFQELDTMQ EEGWE+VVTTLAKAQKAIDLGV+CQPQPEEETELTVLCLRNTALDLHQLWRRFHS+LDWVLEEAEDGDLFDGADSAMV ECLN+FKGFYM+RYD+VLTFLLDAEELLGIYGLHVPDLSLPAAHGFDTPSTQ STDSNS+ XXXXXXXXXXXX XXXXXXXXXXXXXXXXX RPRKATTAPAT++KTAASRAKAYRAS X SKGG+ T++NAAVKGGGARRGVDRKQ AVPPGVE T G GGV E
Sbjct: 306 RVLLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLAKMSREWDKKTACRYFDLDVLCRVSEEGEAFRSFVDRYGTYVFKRAEGFNARFQELDTMQREEGWENVVTTLAKAQKAIDLGVSCQPQPEEETELTVLCLRNTALDLHQLWRRFHSSLDWVLEEAEDGDLFDGADSAMVEECLNDFKGFYMTRYDDVLTFLLDAEELLGIYGLHVPDLSLPAAHGFDTPSTQTSTDSNSAV-----------EEAXXXXXXXXXXXXNEDGGSEXXXXXXXXXXXXXXXXXAARPRKATTAPATSSKTAASRAKAYRASKTASSRGSPSVSYGGGGXSSNPSDVASKGGNDTVKNAAVKGGGARRGVDRKQSAVPPGVERTESVGEKGGVDE 691
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A835ZEZ8_9STRA (ENTH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEZ8_9STRA) HSP 1 Score: 195 bits (496), Expect = 9.750e-52 Identity = 111/261 (42.53%), Postives = 153/261 (58.62%), Query Frame = 1
Query: 1 RVLLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTAC---------RYFDLDVLCRVSEEGEA------FRSFVDRYGTYVFKRAEGFNARFQELDTMQDEEGWEHVVTTLAKAQKAIDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVLTFLLDAEELLGIYGLHVPDLSLPAAHGFDTPSTQASTDSNSSA 738
RV LRKLWAKM EPDWRT K+ Y+ H +LR+LP A+LK +GK+ RE K+ A RYFDL V+E G A F FV Y TYV +R++ F +F+EL + +EHV++ L KA+KA++ +ACQ ++E+E+T+L L+ +D +L+R FH+AL W L EAE GDLF AD V E L +F+ FY S +DE+ FL + E LL ++GL +LSLP D A+ S+A
Sbjct: 255 RVFLRKLWAKMREPDWRTKVKSCYILHRVLRELPPRDDAVLKKHMGKLRRERSKRPAGAVGGGGDRPRYFDLAAA--VAEVGPAPADARTFGGFVRSYVTYVLRRSQQFGGKFEELQGVGPGSSYEHVISVLVKARKALEAAMACQISADQESEVTLLALQLVCMDAAKLFRLFHAALGWALTEAESGDLFAEADPQAVKEVLADFRAFYDSCHDELSAFLDETEALLDVWGLSCGNLSLPEPLPADVALLSAARSPASAA 513
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A4D9DHA3_9STRA (ENTH domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHA3_9STRA) HSP 1 Score: 157 bits (396), Expect = 9.120e-39 Identity = 95/246 (38.62%), Postives = 137/246 (55.69%), Query Frame = 1
Query: 1 RVLLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTACRYFD------LDVLCRVSEEGEAF----RSFVDRYGTYVFKRAEGFNARFQELDTM-QDEEGWEHVVTTLAKAQKAIDLGVAC---QPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVLTFLLDAEELLGIYGLHVPDLSLPAAHGFD 696
RV LRKLWAKM+E DWRTV+KA+YLFH +LR+ + I K KMSRE KKT RYFD +DV+ G R F+ RY YV +RA+ F ++F+E+ + Q E + +V L KA+K + G+ C + + + ++E+T++C A D++ L R FH L W ++ F+GAD A VA+ L F+ Y Y +V FL +LLG+YG+ + L AH F+
Sbjct: 297 RVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVCAKMSREGCKKTRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEMKVIGQREIEAKDLVGQLGKAEKVLSSGLECALGEAEEDADSEVTLMCAELVARDVYDLSRLFHEKLRWAIDN--QAAAFEGADRAEVAKILERFQASYARLYPQVQQFLTQTAQLLGVYGIKLRT-KLEPAHRFE 539
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A7S1TWX4_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWX4_9STRA) HSP 1 Score: 118 bits (295), Expect = 3.230e-25 Identity = 71/223 (31.84%), Postives = 113/223 (50.67%), Query Frame = 1
Query: 1 RVLLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTAC--RYFDLDVLCRVSEEGEAFRSFVDRYGTYVFKRAEGFNARFQELDTMQDEEGWEHVVTTLAKAQKAIDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVLTFLLDAEELLGIYGLHVP 663
RV LRKLW+KM E DWRTV KA++L H I+RD AI L +M RE + K YF+L + ++ E E+FR+FV Y +V KRA F RF ++ + ++ V+ T+ A+ ++ G+ C +P+ E +T L + DL LW+ + ++ ++E+ +L +M E + + F R + + F+ L Y L VP
Sbjct: 233 RVTLRKLWSKMMEKDWRTVIKALFLLHRIVRDSHPRDGAIFDRHLRRMQREINPKAKPPRTYFNLAQIIDLAPESESFRNFVGAYAVFVLKRATTFAGRFDQVKALGPDDKESDVLATMRAARATLNYGLRCNLEPDLENYVTCTALEVLSRDLRDLWKGYCKGINCLMEDRRPSNL----SPSMKKEKMKLLESFKEDR-NNLKQFMRKTSRALAYYRLRVP 450
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A7S2SSM7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSM7_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.030e-24 Identity = 77/228 (33.77%), Postives = 111/228 (48.68%), Query Frame = 1
Query: 1 RVLLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTACRYFDLD-------VLCRVSEEGEAFR--SFVDRYGTYVFKRAEGFNARFQELDTMQDEE--GWEHVVTTLAKAQKAIDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVLTFLLDAEELLGIYG 651
RV LRKLWAK+ EPDWR KA+ + H +L E + K + KM +E K++ R+FD+ L + +E A + F+ Y YV +R+ F F+EL + E E +V L KA+K + LG+AC+ P+ E+ELT CL DL QL+ F ++L VL+ D A V L F F + + + L D LL +YG
Sbjct: 97 RVTLRKLWAKLCEPDWRVSLKALCILHVLLSRGTAEDTIVFKAMMEKMRKERSKRSKSRFFDVSRVLGDRPPLGLLGDESSARQCIQFLRHYANYVLQRSRMFTGNFEELQLAKRGELQSTEDLVMQLYKAKKLLSLGLACRVSPDIESELTFACLEMVVFDLVQLFDLFDTSLSLVLDRKSRMFTRWNKDEARVL--LRTFSKFRLEVGESIQKELEDVGSLLALYG 322
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A7S0SQZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQZ5_9STRA) HSP 1 Score: 108 bits (271), Expect = 6.230e-23 Identity = 67/212 (31.60%), Postives = 116/212 (54.72%), Query Frame = 1
Query: 10 LRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWD-KKTACRYFDLDVLCRVSEEGEAFRSFVDRYGTYVFKRAEGFNARFQELDTMQDEEGWEHVVTTLAKAQKAIDLGVACQ-PQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVLTFLLDAEELL 639
L K+W KM E DWRTVSK+ YL H I+RD VE + +MSR + KK +YFDL ++ ++ G +++ FV Y YV R++ F+A+F + D + + VV L KAQ++++LG+ + ++ +T L+ A+DL L+++F S L +++ ++ A++ V + LN K + + ++ FLL ++ L
Sbjct: 139 LHKIWTKMCEKDWRTVSKSFYLLHCIVRDSSVESCEEFTDAIKEMSRTRNPKKPDHKYFDLKLIKQLDSFGNSYKDFVVAYAQYVLYRSKNFHAKFNQFDELNSKSKETEVVALLKKAQQSLNLGLKVSLTKKDQYNAITGQILKLLAIDLRDLYQQFTSTLLGIVDSSKGSYASPKANNDDVIDLLNFHKDYTV----KIKEFLLKIQKNL 346
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.220e-17 Identity = 75/234 (32.05%), Postives = 108/234 (46.15%), Query Frame = 1
Query: 7 LLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTACRYFDLDVLCR--VSEEGEAFRSFVDRYGTYVFKRAEGFNARFQEL------DTMQDEEGWEHVVTTLAKAQKA------IDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYM-SRYDEVLTFLLDAEELLGIYGLHVP 663
+LRKLWAKM+E DWRT KA+Y+ H D EH LK + ++ R D K ++F +L SEE +R+F+ RY YV RA+ F F E+ DT + + + + +T KA ++ G+AC + EE E T L + A DL L AL L+ D DL GAD ++ + FY S + + + L YGL +P
Sbjct: 271 VLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKFFSSKLLLAGDTSEETAKYRAFLGRYAHYVLLRAQCFGGMFDEIAAPSAKDTKKKKAAPKPITSTSLKADHLDAAKLLLETGLACVLKKGEENENTALAVERVASDLLGLTTAVTGALTRALK---DDDL-KGADPVLIKKWCE----FYSESLLPQTRSMVKKTAPTLDAYGLFLP 496
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A7S1UKU7_9STRA (Hypothetical protein n=3 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UKU7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.230e-17 Identity = 73/234 (31.20%), Postives = 106/234 (45.30%), Query Frame = 1
Query: 7 LLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWD-KKTACRYFDLDVLCRVSE--EGEAFRSFVDRYGTYVFKRAEGFNARFQELDTM------QDEEGWEHVVTT------LAKAQKAIDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVLTFLLDAEELLGIYGLHVP 663
+LRKLWAK +E DWRT KA+Y+ H D EH L L ++ R D K+ +YF+ L V E EAFR FV RY YV R + F F E+ + + +T L A+ + G+ACQ + +E TE T + + A DL L SA+ L A G+ DG+D ++ + + + R LT + L YG+++P
Sbjct: 271 VLRKLWAKTAEKDWRTKVKALYILHRYSSDGAPEHKDALIKRLRELRRTSDPKRKGKKYFNKQQLLAVENTPENEAFRGFVGRYAHYVLARTQSFGGMFVEIGEAPRPPPKSSNRPPKPLTSTSLKQEHLVNAKMVLTAGLACQLKDDEVTENTAIAVERVASDLIAL----SSAVAMALNRALKGNSSDGSDPVLLKKWCEFYSEELLPR---TLTMVKKTSPKLDPYGMYLP 497
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A6S8JKL4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8JKL4_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 6.500e-17 Identity = 71/231 (30.74%), Postives = 106/231 (45.89%), Query Frame = 1
Query: 7 LLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTACRYFDLDVLCR--VSEEGEAFRSFVDRYGTYVFKRAEGFNARFQELDTMQ--DEEGWEHVVTTLA-------KAQKAIDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRY-DEVLTFLLDAEELLGIYGLHVP 663
+LRKLW KM E DWRT KA+Y+ H D EH A LK L ++ R D K ++F+ L E FR+F+ RY YV RA+ F+ F+E+ + D++ +T+ A A + G+ACQ + EE E T + + A DL L AL+ L++ + G D A+V + FY + + + + L YGL +P
Sbjct: 150 VLRKLWGKMCEKDWRTTMKALYVLHRFSADGAPEHAASLKARLRELRRTKDPKRKDKFFNSKQLLAGDAKPENIKFRAFMSRYAHYVLLRAQCFSGMFEEISSEPKVDKKKPPKPITSTALRTEHLEAASMLLKAGLACQLKDGEECENTAIAVERVASDLIGLTSAVAMALNRALKDVD----LKGGDPALVKKWCE----FYSEQLLPQTKSMVKKTSSRLDAYGLFLP 372
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Match: A0A7S2EXR9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXR9_TRICV) HSP 1 Score: 92.0 bits (227), Expect = 1.060e-16 Identity = 75/238 (31.51%), Postives = 106/238 (44.54%), Query Frame = 1
Query: 7 LLRKLWAKMSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTACRYFDLDVLCR--VSEEGEAFRSFVDRYGTYVFKRAEGFNARFQEL------DTMQDEEGWEHVVTTLA-------KAQKAIDLGVACQPQPEEETELTVLCLRNTALDLHQLWRRFHSALDWVLEEAEDGDLFDGADSAMVAECLNEFKGFYMSRYDEVL----TFLLDAEELLGIYGLHVP 663
+LRK+WAKM+E DWRT KA+Y+ H D +H A LK L ++ R D K +YF+ L S + +R+F+ RY YV RA+ F F E+ + +T+ A AQ + G AC + EE E T C+ A DL L S L+ L+ G +GAD A++ FY DE+L + A L YGL++P
Sbjct: 147 VLRKVWAKMTEKDWRTKVKALYVLHRFSSDGAPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLAGDASPDNVKYRAFMARYAHYVLLRAQCFGGMFNEIGQEPPTSSKSSSRSSAKPITSAALRPEHLDAAQMILKAGTACALKDGEECENTCFCVERVASDLIGLTGAVASGLNRALK----GKGAEGADPAVIKRWCE----FYS---DELLPKTKAMVKKASPQLDAYGLYLP 373 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13284.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13284.2471.1 >prot_E-fasciculatus_F_contig13284.2471.1 ID=prot_E-fasciculatus_F_contig13284.2471.1|Name=mRNA_E-fasciculatus_F_contig13284.2471.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=385bp MSEPDWRTVSKAVYLFHSILRDLPVEHHAILKIFLGKMSREWDKKTACRYback to top mRNA from alignment at E-fasciculatus_F_contig13284:1..3534- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13284.2471.1 ID=mRNA_E-fasciculatus_F_contig13284.2471.1|Name=mRNA_E-fasciculatus_F_contig13284.2471.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13284:1..3534- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13284:1..3534- >mRNA_E-fasciculatus_F_contig13284.2471.1 ID=mRNA_E-fasciculatus_F_contig13284.2471.1|Name=mRNA_E-fasciculatus_F_contig13284.2471.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2310bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13284:1..3534- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |