mRNA_E-fasciculatus_F_contig13209.2419.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13209.2419.1
Unique NamemRNA_E-fasciculatus_F_contig13209.2419.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13209.2419.1 vs. uniprot
Match: D7FMM7_ECTSI (Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 6.090e-42
Identity = 94/111 (84.68%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:    1 VIVSKITPVELFMLTDKSEDLKDTWDFLDRLLLNYEILASSPENAADVATGVSTXXXXXXXXXXXXXGPILKQASKQVPGAETLTQTAPNVAALASQALSFVASQVPHAGE 333
            VI       EL+MLTDKSEDLKDTWD LDRLLL+YEILASSPENAADVATG+STXXXXXXXXXXXX GP  KQASKQVPGAETL QTAPNVAALASQALSFVASQVP AG+
Sbjct:  196 VIAGMYASTELYMLTDKSEDLKDTWDLLDRLLLDYEILASSPENAADVATGLSTXXXXXXXXXXXXAGPFFKQASKQVPGAETLAQTAPNVAALASQALSFVASQVPRAGQ 306
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13209.2419.1 vs. uniprot
Match: A0A6H5JV38_9PHAE (Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV38_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 3.550e-39
Identity = 86/111 (77.48%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:    1 VIVSKITPVELFMLTDKSEDLKDTWDFLDRLLLNYEILASSPENAADVATGVSTXXXXXXXXXXXXXGPILKQASKQVPGAETLTQTAPNVAALASQALSFVASQVPHAGE 333
            +I       EL+MLTDKSE LKDTWDFLDRLLL+YEILA++PENAADVATG+ T  XXXXXXXX   GP LKQASKQVPGAE L QTAPNVAALASQALSFVASQVP AG+
Sbjct:  316 IIAGMYASTELYMLTDKSEGLKDTWDFLDRLLLDYEILAAAPENAADVATGLGTVAXXXXXXXXSLAGPFLKQASKQVPGAEALAQTAPNVAALASQALSFVASQVPRAGQ 426
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13209.2419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMM7_ECTSI6.090e-4284.68Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV38_9PHAE3.550e-3977.48Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13209contigE-fasciculatus_F_contig13209:40..3207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3.3e-34
Seed eggNOG ortholog2880.D7FMM7
Preferred nameCOQ9
KEGG koko:K08869,ko:K18587
GOsGO:0000151,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009892,GO:0009987,GO:0010605,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0019899,GO:0022900,GO:0022904,GO:0030234,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031461,GO:0031625,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032991,GO:0034641,GO:0042180,GO:0042181,GO:0042773,GO:0042775,GO:0042802,GO:0042803,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051246,GO:0051248,GO:0055086,GO:0055105,GO:0055106,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0072521,GO:0080090,GO:0098772,GO:1901004,GO:1901006,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1903320,GO:1903321,GO:1990234
EggNOG free text desc.rpsU-divergently transcribed protein
EggNOG OGsCOG5590@1,KOG2969@2759
COG Functional cat.S
BiGG ReactioniMM904.YLR201C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons4
Model size333
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13209.2419.1prot_E-fasciculatus_F_contig13209.2419.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13209 40..3207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.5266824-CDS-E-fasciculatus_F_contig13209:39..1131622927824.5266824-CDS-E-fasciculatus_F_contig13209:39..113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 40..113 +
1695995710.5660305-CDS-E-fasciculatus_F_contig13209:39..1131695995710.5660305-CDS-E-fasciculatus_F_contig13209:39..113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 40..113 +
1622927824.537141-CDS-E-fasciculatus_F_contig13209:897..9551622927824.537141-CDS-E-fasciculatus_F_contig13209:897..955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 898..955 +
1695995710.5863907-CDS-E-fasciculatus_F_contig13209:897..9551695995710.5863907-CDS-E-fasciculatus_F_contig13209:897..955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 898..955 +
1622927824.5467072-CDS-E-fasciculatus_F_contig13209:1845..19441622927824.5467072-CDS-E-fasciculatus_F_contig13209:1845..1944Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 1846..1944 +
1695995710.6044557-CDS-E-fasciculatus_F_contig13209:1845..19441695995710.6044557-CDS-E-fasciculatus_F_contig13209:1845..1944Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 1846..1944 +
1622927824.556724-CDS-E-fasciculatus_F_contig13209:3105..32071622927824.556724-CDS-E-fasciculatus_F_contig13209:3105..3207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 3106..3207 +
1695995710.6183054-CDS-E-fasciculatus_F_contig13209:3105..32071695995710.6183054-CDS-E-fasciculatus_F_contig13209:3105..3207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13209 3106..3207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13209.2419.1

>prot_E-fasciculatus_F_contig13209.2419.1 ID=prot_E-fasciculatus_F_contig13209.2419.1|Name=mRNA_E-fasciculatus_F_contig13209.2419.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
VIVSKITPVELFMLTDKSEDLKDTWDFLDRLLLNYEILASSPENAADVAT
GVSTVATSLSSAALSLAGPILKQASKQVPGAETLTQTAPNVAALASQALS
FVASQVPHAGE
back to top

mRNA from alignment at E-fasciculatus_F_contig13209:40..3207+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13209.2419.1 ID=mRNA_E-fasciculatus_F_contig13209.2419.1|Name=mRNA_E-fasciculatus_F_contig13209.2419.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13209:40..3207+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTATCGTGTCGAAAATCACGCCGGTAGAGCTCTTCATGCTGACGGACAA
GTCTGAGGACCTGAAGGACACGTGGTGAGTTGCACCTTGCAGCAGTCCCT
CCCTCTACATCAACAGGTTGATCCTCCACCGGGCTCCGAAATTTCCGGCA
TCCGTGCAACGCGCTCCGTCAAGTCATCCGAGGGCGTGCTACGATTTCTC
TCTGTCATGGAACGTGCACGGCCCCTCTGTACTGACCCCGCTGCTTCGCG
TTCTGGGCAGACCGTTGTTTGGTGCCGTTATTTTTGCACTCTGGAGCATG
ACGCGAGATAACACACCCACCAAGATGGTAGCACACACCCCACACAACAC
CACACCACACCCGGTGGCACATTTATACGGGTCAACATGAGACCAAATAA
TTTGCTACTCATATCAAGTTATTAACGCGGTGGCATACGACACCATACCC
GCATCCCACGGCACACCCCGTTGAAAATTGTTTTAGAGACGACAGAGTGC
TAGATACCACCGGTGTGTTTTCTTGTGTCTTACTATGGCATACGGCAGGC
ATGCATGTATGCACGTTTGAGGAGGGGAAAAGGTGCAGAAATCCACATTG
TATGTCACACGGCCATGTGTGTCGCCACAGCGTGGCGTCGGAATTTCTGG
GGTCCAAGGGCTCGAAACGACCATTCGGAACTTCAAACGATTAAGTACCG
TCAACCAGTCGGACTTGAGCCAATCAGAACTGAGACACCCGTGGAGGGCC
CGTGTGAGATGAACACGGTGTGATGTTTTGATTCTCGGTAGGAAGTTGAT
TGTGTGGTCCTTCTTTTTTGCACGCGTGCGCCACGGCTTGCCGTTGGAAA
CCCCCCAGGGACTTCTTGGACCGCCTCCTGTTGAACTACGAGATTCTCGC
GTCTTCTCCGGAGAATGTGAGCGTTTTTTGCTGCATTGTTGGTGCACTTC
CTGTGCGCGCGCGCACCGTGCGTATCACACACGTGGTACATGGACGAGGC
ATCTGTTATTGTTGTTGGTGTTGTCTTCACATTAAAACCCGTTCCGATCT
CACTCTCTGAAGGGTAGTTAGCGGTTCTTTATACATTGCTTGCGTAATTT
TGTACAACTCGTACAGCACCGTCCGTGCAGCAACACTCAAACGTTCCGCG
ATTGGAACGGTCCTTGTTGGCGGTACCCTACAGCATGTACATCGTTGAAG
CGGCGACAGGCGTCATTGTGGCTGCGTTCGTCATCCATGCCGTGTGCCGG
TGTGGGTGTGACGACGCGTCCATGTGTAAACGCCTTGTTCCTTGAGAAAT
GGAAAATTAGTTTGTGCCGCACTTGACTTCTTCAGTGCCCCCCCCCCAAT
TTTCACTTCAATGTATATACGATGCTACTTTGATGGAACAGCAGGCAACA
GACTGGACGAACGCTGGCAAGAACATCCGTTGTATTTGCCCACTTTATTT
CCGTGATATGGTTTTCTGTGTTTCTGGACGAACTGCGGGGTGTGGTTTGG
AATACTTGCAGCAGGCTTTCTCCTCACCTCCCAGGTTGTGTTTGGTGGCA
AGTAGTGATGCGATGCTCTTACATCAGGGATGTGCGTGGAGGAAATAAAT
GTACGGTGGCATTCGCTTCGTGACCCCTCTTGTGCCTTTATTTCATTGAT
CTCCTTCCCTAGCGCACGAGTTGCGCCTTTTTGACTTTACGCGTCCCGAA
CGAAGCAAAGCAGATGAATAATGCCTTCGACGCCTGTGAAAATCACCTCC
ATCTTGCCTTGACCCCCACTCGGCGCTTTTTTTGCTTTGTTAATCACATG
CACCAGGCGGCAGATGTTGCAACTGGGGTGAGCACCGTGGCTACGTCCTT
GAGTTCAGCGGCCTTGTCCCTGGCCGGCCCTATCTTGAAACAAGCTTCCA
AGCAGGTAATCCGTGTGTTTTGCGAGTGTTCATTCGCTGTCATTTGTTTT
TTCATGAAATTGTACGCCTGTTGGATTTTATGGACTATACCTTTCAACGC
ACCCCAGTTAATCGGTGCCTTTCGCTCAGAGCCGTAACGTTGTCTGTTCA
TTACCTCTAGCATTGATACTGGCTCAAGTGACGCGGCCGCCTTCCGTGGG
CCATCAATACAGAACAGAACAGATAAAAAGGCACGCATATACTGACTCGT
CAAAAGAAAATATCGCCAACGACATTCAGTACGAACGTGAGCGCTCAAGA
AAGATTGAGGTTCATTCTCCTATGCCGGCTGTTGGCTCGTGAGACAAACC
CTACGAACGGGTGGAAGCAAAAGCGGCAACAGCAGTACTTGTTTCGTTTT
TGTCGTTTTGCTGGAAACTTCACGAGGGAATGGCGCCGACCATGGAATTC
CGCCCCCTCCGCCGTTACCACGTGATTCTGCTAACGAAAGAGCACACCCT
GGCAGGGGGAACCGCGAGAAAACCAGCAGTGATTCCAATATTGGCGTCCA
CCTACCAAGAGCAGGCTCTTCATTCTCTTTTCATTCATTTTTCTACACTC
ACTAGCGCGCATGGTTTGCAGTTTGTGTGGTGAATCTTGAACTCGGCGAC
TGATGTTGTCCAACCCCAGTCGTTACTCCACGGTGCCAGGCGACGATTGT
TAGTGGATTGATTCCATCGGGGGAGCCACGGCCGTTTTTCACTCCAACGC
TTGCTTTAGGCATTTGACTCCTGCGCTCGCGTGTGTAAGTCCATGAACCG
CATGAGGCAGCGCTGATTACTTGTACAGAGAGTACAACCCTGGGGTTAAT
AGAATCAGGCCAAACAGCTCCAACTAGTTGAAGAACTCCGGTTGTACTTT
CGTGAGATGTACGGCATATCCGCTATGCTACAAGTCAGCGCTCACTCGTA
GCGTTGTGGGTATGCTGTACACCTAATCTAACATTCACTGCCTTCCAAAG
CCCTCGCGCTTTCACTATTTTCTCATTCATCTGGCGAACCAAACGTTCAC
GGCACTCGGCAGCTCTTGCCGGCACGTACACTTCAAAATCGACGACACAA
TCTGCGTTAGAATGATTTTTTTCCTGTCTTCATTTATTTCCTCTCCTCTG
CTACGTCTTTCCTCAGGTCCCGGGGGCAGAAACCTTGACCCAGACGGCGC
CGAACGTGGCCGCCCTGGCTTCGCAAGCGTTGTCCTTCGTCGCGTCACAA
GTTCCGCACGCTGGTGAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13209:40..3207+

>mRNA_E-fasciculatus_F_contig13209.2419.1 ID=mRNA_E-fasciculatus_F_contig13209.2419.1|Name=mRNA_E-fasciculatus_F_contig13209.2419.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13209:40..3207+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTATCGTGTCGAAAATCACGCCGGTAGAGCTCTTCATGCTGACGGACAA
GTCTGAGGACCTGAAGGACACGTGGTTATCGTGTCGAAAATCACGCCGGT
AGAGCTCTTCATGCTGACGGACAAGTCTGAGGACCTGAAGGACACGTGGG
ACTTCTTGGACCGCCTCCTGTTGAACTACGAGATTCTCGCGTCTTCTCCG
GAGAATGGACTTCTTGGACCGCCTCCTGTTGAACTACGAGATTCTCGCGT
CTTCTCCGGAGAATGCGGCAGATGTTGCAACTGGGGTGAGCACCGTGGCT
ACGTCCTTGAGTTCAGCGGCCTTGTCCCTGGCCGGCCCTATCTTGAAACA
AGCTTCCAAGCAGGCGGCAGATGTTGCAACTGGGGTGAGCACCGTGGCTA
CGTCCTTGAGTTCAGCGGCCTTGTCCCTGGCCGGCCCTATCTTGAAACAA
GCTTCCAAGCAGGTCCCGGGGGCAGAAACCTTGACCCAGACGGCGCCGAA
CGTGGCCGCCCTGGCTTCGCAAGCGTTGTCCTTCGTCGCGTCACAAGTTC
CGCACGCTGGTGAGGTCCCGGGGGCAGAAACCTTGACCCAGACGGCGCCG
AACGTGGCCGCCCTGGCTTCGCAAGCGTTGTCCTTCGTCGCGTCACAAGT
TCCGCACGCTGGTGAG
back to top