mRNA_E-fasciculatus_F_contig132.2411.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 192 bits (487), Expect = 7.200e-60 Identity = 90/146 (61.64%), Postives = 112/146 (76.71%), Query Frame = 1
Query: 10 QVRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRGRKCSSTEAWFVW 447
+V ALL +V + GGVLD CG+ DA+ VL A L V+TND +P L ADTHLDA+++ F + + +RPDW+VTSPPY NAF IL +AL V RVGVAFKLRL+FLEP +RG+WLK+NPP +V+LPRATY GR CSSTEAWF+W
Sbjct: 14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIW 159
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 105 bits (263), Expect = 2.600e-26 Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 64 CGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATY-RGRKCSSTEAWFVW 447
CG DAV+T L + + TND+S ADT+L+AS + F E +L +RP+WVVTSPPY A +K A+ + GVAFK+ + FLEP RG WL+ NPP V L RA Y R + E W VW
Sbjct: 2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 106 bits (264), Expect = 1.170e-25 Identity = 64/133 (48.12%), Postives = 81/133 (60.90%), Query Frame = 1
Query: 13 VRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSP-----SLVADTHLDASTDAFAEAYL--EDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVML 390
V ALL V+++G VLD CG DA++T L A +V TND+S L DT+LDAS +FA +L + +RPDWV+TSPPYK A +K AL + GVA KL L+FLEP RG WL+ NPP V
Sbjct: 90 VEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.810e-25 Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1
Query: 292 VGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRGRKCSSTEAWFVWE 450
+GVAFKLRLTFL P SRGRWLK+NPPDRIVMLPRATYR R+CSSTE WFVWE
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWE 53
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 103 bits (256), Expect = 6.220e-25 Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 1
Query: 13 VRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRG--RKCSSTEAWFVWE 450
V LL H+D+ G +L+ C G A+S L GL V T D +AD D DA Y + + DWVVT+PP+ +A IL +A VGVAF LRL++LEP RG+WL E+PP ++++LPR ++ G + S T AW +W+
Sbjct: 26 VDTLLNHIDITGTLLEPCN-GSGAISNRLKEDGLSVITTD-----IADNPQD---DATTHQYWQRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWK 163
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.080e-18 Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 151 ADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATY-RGRKCSSTEAWFVW 447
ADT+LDAS ++F E +L +RP+WVVTSPPY A +K A+ + GV FK+ ++ LEP RG WL+ NPP + L RA Y R E W VW
Sbjct: 137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVW 238
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 8.080e-14 Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 1
Query: 37 DVQGGVLD-CCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRI---VMLPRATYR--------GRKCSS---TEAWFVW 447
++ G +L+ GAGQ ++ L G + TND+ P+ D DA TD FA + DWVVT+PP+ A IL A+ RVGVAF LRL+++EPV +R WL I + PR +R G+K + T AWFVW
Sbjct: 26 EINGRILEPTAGAGQ--IARALAGNGRTIFTNDIDPNHGCDFASDA-TDPFAFCWGL-YGGIDWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVW 173
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.830e-13 Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query: 165 GSITILSGGFSFSHRPLLYTGSRKVSLSLNATPTRPTRNACFKIKNAFL*GGLVTTQSGRRVSSRYASAKASVEAS 392
G T ++ SH PL+ GSRKVSLSLNATPTRP A FKI A L GGLVTT SGRR SS+ S SV AS
Sbjct: 160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVAS 235
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5K2D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D0_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 8.260e-11 Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 1
Query: 64 CGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRGRKCSSTEAW 438
CG DAV+T L + + T D+S ADT+LDAS ++F E +L +RP+WVVTSPPY A +K A+R G+ F R WL N P V + +T R + + W
Sbjct: 2 CGGPTDAVATRLRS-ACEIRTKDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMR----GIQ---NAHFFTATLRRPGWLTANEPPVCVFV--STQRKTRMRTMRRW 118
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 8.700e-10 Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = -1
Query: 145 PVRRVFL*PSPSALYRFEKSQSQLECHSHAPDPQRLFQNKKRVLVRRACHHPVRTARVL*VRLGKSIRRGVQVGIGDQ 378
PV P PS +KSQ QLECH H P+PQ FQN + VLV RA H P+R L + K +RRG+ + + DQ
Sbjct: 164 PVAEAKHLPLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHMTVCDQ 241 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig132.2411.1 >prot_E-fasciculatus_F_contig132.2411.1 ID=prot_E-fasciculatus_F_contig132.2411.1|Name=mRNA_E-fasciculatus_F_contig132.2411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=113bp MQFQVRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVback to top mRNA from alignment at E-fasciculatus_F_contig132:747..1639- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig132.2411.1 ID=mRNA_E-fasciculatus_F_contig132.2411.1|Name=mRNA_E-fasciculatus_F_contig132.2411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=893bp|location=Sequence derived from alignment at E-fasciculatus_F_contig132:747..1639- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig132:747..1639- >mRNA_E-fasciculatus_F_contig132.2411.1 ID=mRNA_E-fasciculatus_F_contig132.2411.1|Name=mRNA_E-fasciculatus_F_contig132.2411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig132:747..1639- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |